View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3471_high_61 (Length: 240)
Name: NF3471_high_61
Description: NF3471
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3471_high_61 |
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Alignment Details
Target: chr3 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 55102979 - 55103201
Alignment:
| Q |
1 |
cagtatgctgtgtttcattctcaacattttacaatcctatcatcacaccatgccgtaattgcacttgtggtggatgcagggaagcaaataaaaattcact |
100 |
Q |
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| T |
55102979 |
cagtatgctgtgtttcgttctcaacattttacaatcctatcatcacaccatgccgtaattgcacttgtggtggatgcagggaagcaaataaaaattcact |
55103078 |
T |
|
| Q |
101 |
gtcttgcataaggtgcatgttatttcatttgctcgaacattcgtgttttttcattaatgtcattaatatgtctacagttgtgtgcttactgctaattatt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| |
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| T |
55103079 |
gtcttgcataaggtgcatgttatttcatttgctcgaacattcgtgttttttcattaatgtcattaatatgtctactgttgtgtgcttactgctaaatatt |
55103178 |
T |
|
| Q |
201 |
aagtaaccaggccaggtgatcct |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
55103179 |
aagtaaccaggccaggtgatcct |
55103201 |
T |
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