View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3471_high_67 (Length: 236)
Name: NF3471_high_67
Description: NF3471
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3471_high_67 |
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| [»] chr6 (4 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 192; Significance: 1e-104; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 17 - 236
Target Start/End: Original strand, 33170083 - 33170302
Alignment:
| Q |
17 |
aaatgatctctataagctttgttgtcaacaaacatattggcacttactcctttctttactctcaccacaataggctttcttggcaagcaagttgtgttaa |
116 |
Q |
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| T |
33170083 |
aaatgatctctataagctttattgtcaacaaacatattggcacttactcctttctttactcttacaaccataggctttcttggcaagcatgttgtgttaa |
33170182 |
T |
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| Q |
117 |
cacaactactcaattcaacattctgtggagaataagcgaaatgttagccacaaacaattatatattttcatctgtgtagtggctgaaataagagttagct |
216 |
Q |
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| T |
33170183 |
cacatatactcaattcaacattctgtggagaataagcgaaatgttagccacaaacaattatatattttcatctgtgtagtggctgaaataagagttagct |
33170282 |
T |
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| Q |
217 |
tgtgtatatcacacttaacc |
236 |
Q |
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|||||||||||||||||||| |
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| T |
33170283 |
tgtgtatatcacacttaacc |
33170302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 17 - 205
Target Start/End: Original strand, 33154361 - 33154549
Alignment:
| Q |
17 |
aaatgatctctataagctttgttgtcaacaaacatattggcacttactcctttctttactctcaccacaataggctttcttggcaagcaagttgtgttaa |
116 |
Q |
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|||||||||||||| ||||||||||||||||| ||||||||| | || ||||||||||||||||||||||||||||||||||| |||||||||||||| | |
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| T |
33154361 |
aaatgatctctatatgctttgttgtcaacaaatatattggcagtgacccctttctttactctcaccacaataggctttcttggtaagcaagttgtgttta |
33154460 |
T |
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| Q |
117 |
cacaactactcaattcaacattctgtggagaataagcgaaatgttagccacaaacaattatatattttcatctgtgtagtggctgaaat |
205 |
Q |
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| T |
33154461 |
cacaactactcaattcaacattctgtggagaataagtaaaacattagcctcaaataattgtatattttgatttgtgtagtggctgaaat |
33154549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 22 - 157
Target Start/End: Original strand, 33144626 - 33144761
Alignment:
| Q |
22 |
atctctataagctttgttgtcaacaaacatattggcacttactcctttctttactctcaccacaataggctttcttggcaagcaagttgtgttaacacaa |
121 |
Q |
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| T |
33144626 |
atctctataagctttgttgtcaacaaacacattggcacttactcctttctttactctcaccacaataggctttcttggcaagcaagttgtgttaacacaa |
33144725 |
T |
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| Q |
122 |
ctactcaattcaacattctgtggagaataagcgaaa |
157 |
Q |
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| T |
33144726 |
ctactcaattcaacattctgtagagaataagtgaaa |
33144761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 17 - 205
Target Start/End: Original strand, 33148817 - 33149005
Alignment:
| Q |
17 |
aaatgatctctataagctttgttgtcaacaaacatattggcacttactcctttctttactctcaccacaataggctttcttggcaagcaagttgtgttaa |
116 |
Q |
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|||||||||||| || || ||||||||||||||| |||| |||| || | ||| |||||||||||||| |||||||||||||||||||||||||| |||| |
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| T |
33148817 |
aaatgatctctacaatctctgttgtcaacaaacacattgacactgacccgtttttttactctcaccaccataggctttcttggcaagcaagttgtcttaa |
33148916 |
T |
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| Q |
117 |
cacaactactcaattcaacattctgtggagaataagcgaaatgttagccacaaacaattatatattttcatctgtgtagtggctgaaat |
205 |
Q |
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|||||||||||||||||||||||||| |||||||| |||| |||| || |||| |||||||||||||| | ||||||| ||||||| |
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| T |
33148917 |
cacaactactcaattcaacattctgtatagaataagtgaaaagttaacctcaaattattatatattttcagttatgtagtgactgaaat |
33149005 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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