View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3471_high_68 (Length: 235)

Name: NF3471_high_68
Description: NF3471
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3471_high_68
NF3471_high_68
[»] chr3 (16 HSPs)
chr3 (6-141)||(30077219-30077353)
chr3 (6-141)||(30079348-30079486)
chr3 (6-135)||(30171514-30171642)
chr3 (6-88)||(30062447-30062529)
chr3 (6-55)||(30055734-30055783)
chr3 (53-141)||(30130691-30130780)
chr3 (53-141)||(30134015-30134104)
chr3 (53-141)||(30135411-30135500)
chr3 (53-141)||(30144962-30145051)
chr3 (6-58)||(30072052-30072104)
chr3 (53-135)||(30141546-30141629)
chr3 (78-135)||(30049143-30049200)
chr3 (6-52)||(30135648-30135694)
chr3 (6-52)||(30141777-30141823)
chr3 (6-52)||(30145199-30145245)
chr3 (24-52)||(30172820-30172848)
[»] chr2 (1 HSPs)
chr2 (143-221)||(28611105-28611185)


Alignment Details
Target: chr3 (Bit Score: 92; Significance: 8e-45; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 6 - 141
Target Start/End: Complemental strand, 30077353 - 30077219
Alignment:
Q  6 gcatgtcttatgcttttattaggcctgttgtttaattaatatatgttttttcaagtaatcaaggaaactgcccaattagacaatgaggtaattgataaat 105  Q
    |||| |||||||||| | |||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||| |||    
T  30077353 gcatttcttatgcttgtgttaggcctgttgtttaattaatatatgttttttctagtaatcaaggaaactgcacaattagacaatgaggtaattgattaat 30077254  T
Q  106 caaaatttgaacagttgaatctcattaccacttcat 141  Q
    ||||||||||||| || |||||||||| || |||||    
T  30077253 caaaatttgaacaatt-aatctcattatcatttcat 30077219  T

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Target: chr3; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 6 - 141
Target Start/End: Complemental strand, 30079486 - 30079348
Alignment:
Q  6 gcatgtcttatgcttttattaggcctgttgtttaattaatatatgttttttcaagtaatcaaggaaactgcccaattagacaatgaggtaattgataaa- 104  Q
    |||| |||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||   |||||||||| ||     
T  30079486 gcatttcttatgcctttgttaggcctgttgtttaattaatatatgttttttcaagtaatcaaggaaattgcacaattagacaacagggtaattgatgaag 30079387  T
Q  105 --tcaaaatttgaacagttgaatctcattaccacttcat 141  Q
      ||||||||| |||| |||||| ||||||||| |||||    
T  30079386 actcaaaatttaaacaattgaatttcattaccatttcat 30079348  T

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Target: chr3; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 6 - 135
Target Start/End: Complemental strand, 30171642 - 30171514
Alignment:
Q  6 gcatgtcttatgcttttattaggcctgttgtttaattaatatatgttttttcaagtaatcaaggaaactgcccaattagacaatgaggtaattgataaat 105  Q
    |||||| |||||||||| ||||||||||||||||| ||||||||||||||  | ||||||||||||| ||| ||||||| ||  |||||||||||| |||    
T  30171642 gcatgtgttatgcttttgttaggcctgttgtttaactaatatatgtttttata-gtaatcaaggaaattgcacaattaggcatcgaggtaattgatgaat 30171544  T
Q  106 caaaatttgaacagttgaatctcattacca 135  Q
    ||||||||||||  ||||||||||||||||    
T  30171543 caaaatttgaactattgaatctcattacca 30171514  T

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Target: chr3; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 6 - 88
Target Start/End: Complemental strand, 30062529 - 30062447
Alignment:
Q  6 gcatgtcttatgcttttattaggcctgttgtttaattaatatatgttttttcaagtaatcaaggaaactgcccaattagacaa 88  Q
    |||||||||||||||||  ||||| |||||||||| |||||||| |||||||||||||||||||||| ||| |||||| ||||    
T  30062529 gcatgtcttatgcttttgataggcttgttgtttaactaatatatattttttcaagtaatcaaggaaattgcacaattatacaa 30062447  T

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Target: chr3; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 6 - 55
Target Start/End: Complemental strand, 30055783 - 30055734
Alignment:
Q  6 gcatgtcttatgcttttattaggcctgttgtttaattaatatatgttttt 55  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  30055783 gcatgtcttatgcttttgttaggcctgttgtttaattaatatatgttttt 30055734  T

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Target: chr3; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 53 - 141
Target Start/End: Complemental strand, 30130780 - 30130691
Alignment:
Q  53 ttttcaagtaatcaaggaaactgcccaattagacaatgaggtaa-ttgataaatcaaaatttgaacagttgaatctcattaccacttcat 141  Q
    |||||||||||||||| ||| ||  |||||| || ||||||||| ||||| |||||||||||||||| |||||||||||||||| |||||    
T  30130780 ttttcaagtaatcaagaaaattgtacaattatacgatgaggtaaattgatgaatcaaaatttgaacaattgaatctcattaccatttcat 30130691  T

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Target: chr3; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 53 - 141
Target Start/End: Complemental strand, 30134104 - 30134015
Alignment:
Q  53 ttttcaagtaatcaaggaaactgcccaattagacaatgaggtaa-ttgataaatcaaaatttgaacagttgaatctcattaccacttcat 141  Q
    |||||||||||||||| ||| ||  |||| | |||||||||||| ||||| |||||||||||||||| |||||||||||||||| |||||    
T  30134104 ttttcaagtaatcaagaaaattgtacaataatacaatgaggtaaattgatgaatcaaaatttgaacaattgaatctcattaccatttcat 30134015  T

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Target: chr3; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 53 - 141
Target Start/End: Complemental strand, 30135500 - 30135411
Alignment:
Q  53 ttttcaagtaatcaaggaaactgcccaattagacaatgaggtaa-ttgataaatcaaaatttgaacagttgaatctcattaccacttcat 141  Q
    |||||||||||||||| ||| ||  |||| | |||||||||||| ||||| |||||||||||||||| |||||||||||||||| |||||    
T  30135500 ttttcaagtaatcaagaaaattgtacaataatacaatgaggtaaattgatgaatcaaaatttgaacaattgaatctcattaccatttcat 30135411  T

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Target: chr3; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 53 - 141
Target Start/End: Complemental strand, 30145051 - 30144962
Alignment:
Q  53 ttttcaagtaatcaaggaaactgcccaattagacaatgaggtaa-ttgataaatcaaaatttgaacagttgaatctcattaccacttcat 141  Q
    |||||||||||||||| ||| ||  |||| | |||||||||||| ||||| |||||||||||||||| |||||||||||||||| |||||    
T  30145051 ttttcaagtaatcaagaaaattgtacaataatacaatgaggtaaattgatgaatcaaaatttgaacaattgaatctcattaccatttcat 30144962  T

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Target: chr3; HSP #10
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 6 - 58
Target Start/End: Complemental strand, 30072104 - 30072052
Alignment:
Q  6 gcatgtcttatgcttttattaggcctgttgtttaattaatatatgttttttca 58  Q
    |||||| |||||||||| |||||||||||||||||||||||||||||||||||    
T  30072104 gcatgtgttatgcttttgttaggcctgttgtttaattaatatatgttttttca 30072052  T

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Target: chr3; HSP #11
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 53 - 135
Target Start/End: Complemental strand, 30141629 - 30141546
Alignment:
Q  53 ttttcaagtaatcaaggaaactgcccaattagacaatgaggtaa-ttgataaatcaaaatttgaacagttgaatctcattacca 135  Q
    |||||||||||||||| ||| ||  |||| | |||||||||||| ||||| |||||||||||||||| ||||||||||||||||    
T  30141629 ttttcaagtaatcaagaaaattgtacaataatacaatgaggtaaattgatgaatcaaaatttgaacaattgaatctcattacca 30141546  T

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Target: chr3; HSP #12
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 78 - 135
Target Start/End: Complemental strand, 30049200 - 30049143
Alignment:
Q  78 caattagacaatgaggtaattgataaatcaaaatttgaacagttgaatctcattacca 135  Q
    |||||||||||||||||||||||| ||||||||| |||||| |||||||| |||||||    
T  30049200 caattagacaatgaggtaattgatgaatcaaaatctgaacaattgaatcttattacca 30049143  T

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Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 6 - 52
Target Start/End: Complemental strand, 30135694 - 30135648
Alignment:
Q  6 gcatgtcttatgcttttattaggcctgttgtttaattaatatatgtt 52  Q
    |||| |||||||||||| |||||||||||||||||||||||||||||    
T  30135694 gcatatcttatgcttttgttaggcctgttgtttaattaatatatgtt 30135648  T

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Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 6 - 52
Target Start/End: Complemental strand, 30141823 - 30141777
Alignment:
Q  6 gcatgtcttatgcttttattaggcctgttgtttaattaatatatgtt 52  Q
    |||| |||||||||||| |||||||||||||||||||||||||||||    
T  30141823 gcatatcttatgcttttgttaggcctgttgtttaattaatatatgtt 30141777  T

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Target: chr3; HSP #15
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 6 - 52
Target Start/End: Complemental strand, 30145245 - 30145199
Alignment:
Q  6 gcatgtcttatgcttttattaggcctgttgtttaattaatatatgtt 52  Q
    |||| |||||||||||| |||||||||||||||||||||||||||||    
T  30145245 gcatatcttatgcttttgttaggcctgttgtttaattaatatatgtt 30145199  T

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Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 52
Target Start/End: Complemental strand, 30172848 - 30172820
Alignment:
Q  24 ttaggcctgttgtttaattaatatatgtt 52  Q
    |||||||||||||||||||||||||||||    
T  30172848 ttaggcctgttgtttaattaatatatgtt 30172820  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 143 - 221
Target Start/End: Original strand, 28611105 - 28611185
Alignment:
Q  143 ctcaccataaaataaaaaagacctgcgtaatttaatggtcctc--tttaaaatacaatcaaacagtttaaattaaaaaatt 221  Q
    |||||||||| |||||| | |||||||||||| ||||  ||||  ||||||| | |||||||| |||||||||||| ||||    
T  28611105 ctcaccataagataaaatacacctgcgtaattcaatgaccctccttttaaaaaaaaatcaaacggtttaaattaaataatt 28611185  T

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