View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3471_high_9 (Length: 469)
Name: NF3471_high_9
Description: NF3471
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3471_high_9 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 395; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 12 - 440
Target Start/End: Complemental strand, 35356009 - 35355584
Alignment:
| Q |
12 |
agtgagatgaaggcgtgtgaaaataacatttctccaaaaatatcaatcctaacctttgtttaggctagagacagaacaaaagacgaaatgtgctacaaat |
111 |
Q |
| |
|
||||| ||||||||||||||||| ||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35356009 |
agtgaaatgaaggcgtgtgaaaacaacatttctccaaaaatattattcctaacctttgtttaggctagagacagaacaaaagacgaaatgtgctacaaat |
35355910 |
T |
|
| Q |
112 |
atccaattgtcctacttggttgatagggaaaatcctagaagaaatataaatcgaatgaaattgctaaacatagtcatgattagttacatttaaaagctga |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35355909 |
atccaattgtcctacttggttgatagggaaaatcctagaagaaatataaatcgaatgaaattgctaaacatagtcatgattagttacatttaaaagctga |
35355810 |
T |
|
| Q |
212 |
aatgtgacttctaaaagtgagtgaaatctaccaacattatatcgaacatatttttgcttgaatttgtctggtataatctcacaagtcacaaccttatatt |
311 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35355809 |
aatgtgacttctaaaagtgagtgcaatctaccaacattatatcgaacatatttttgcttgaatttgtctggtataatctcacaagtcacaaccttatatt |
35355710 |
T |
|
| Q |
312 |
ttaatataaacagttaatcattcataaatcatatataaatgcaaagtaactaactactataccttgtataatttgtcgagcattcgttttcaaaatgtga |
411 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35355709 |
ttaatataaacagttaatcattcataaatcatatataaatgcaaagtaacta---actataccttgtataatttgtcgagcattcgttttcaaaatgtga |
35355613 |
T |
|
| Q |
412 |
caaccctagagtcctaactatatataata |
440 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
35355612 |
caaccctagagtcctaactatatataata |
35355584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 20 - 300
Target Start/End: Complemental strand, 35360291 - 35360014
Alignment:
| Q |
20 |
gaaggcgtgtgaaaataacatttctccaaaaatatcaatcctaacctttgtttaggctagagacagaacaaaagacgaaatgtgctacaaatatccaatt |
119 |
Q |
| |
|
||||||||||||||||||||||||| |||| ||| |||| | || ||||||||||||||||||| || |||||||||||||||||||||||||||| |
|
|
| T |
35360291 |
gaaggcgtgtgaaaataacatttcttcaaatata-caattatttgctgtgtttaggctagagacagag-aagagacgaaatgtgctacaaatatccaatt |
35360194 |
T |
|
| Q |
120 |
gtcctacttggttgatagggaaaatcctagaagaaatataaatcgaatgaaattgctaaacatagtcatgattagttacatttaaaagctgaaatgtgac |
219 |
Q |
| |
|
||||||||||||||||||||||||||||| || |||||||||| |||||||||||| |||||| | ||||||||||||||| |||| ||||||||||||| |
|
|
| T |
35360193 |
gtcctacttggttgatagggaaaatcctaaaaaaaatataaattgaatgaaattgccaaacatggccatgattagttacatctaaaggctgaaatgtgac |
35360094 |
T |
|
| Q |
220 |
ttctaaaagtgagtgaaatctaccaacattatatcgaacatatttttgcttgaatttgtctggtataatctcacaagtcac |
300 |
Q |
| |
|
||||||||| ||||| ||| |||| || || |||| |||| | |||||||||||||||||||||| || ||| |||||||| |
|
|
| T |
35360093 |
ttctaaaagagagtgtaatttaccgaccttgtatcaaacaca-ttttgcttgaatttgtctggtacaacctcccaagtcac |
35360014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University