View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3471_low_1 (Length: 593)

Name: NF3471_low_1
Description: NF3471
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3471_low_1
NF3471_low_1
[»] chr2 (16 HSPs)
chr2 (19-291)||(40728751-40729023)
chr2 (35-288)||(35670091-35670346)
chr2 (19-219)||(28266544-28266745)
chr2 (35-269)||(12773776-12774013)
chr2 (91-291)||(18292064-18292266)
chr2 (119-291)||(40448194-40448367)
chr2 (91-286)||(34397181-34397377)
chr2 (119-288)||(41339577-41339749)
chr2 (91-286)||(44789190-44789385)
chr2 (391-466)||(40728576-40728651)
chr2 (24-237)||(29271197-29271415)
chr2 (391-476)||(41339389-41339474)
chr2 (119-219)||(23827782-23827883)
chr2 (410-474)||(35669623-35669687)
chr2 (119-195)||(11387654-11387731)
chr2 (430-474)||(40448515-40448559)
[»] chr5 (19 HSPs)
chr5 (22-291)||(38001595-38001864)
chr5 (19-291)||(30910371-30910644)
chr5 (35-290)||(42862002-42862258)
chr5 (57-282)||(40691524-40691752)
chr5 (119-291)||(537533-537706)
chr5 (122-281)||(6309411-6309571)
chr5 (224-291)||(4557383-4557450)
chr5 (392-474)||(6309696-6309778)
chr5 (398-474)||(30916242-30916318)
chr5 (23-205)||(23211068-23211248)
chr5 (392-463)||(38279398-38279469)
chr5 (392-478)||(42862360-42862447)
chr5 (242-290)||(42640266-42640314)
chr5 (20-141)||(27026967-27027089)
chr5 (257-291)||(38279263-38279297)
chr5 (107-164)||(4557453-4557510)
chr5 (398-474)||(40691855-40691932)
chr5 (416-471)||(25674365-25674420)
chr5 (430-474)||(537855-537899)
[»] chr7 (27 HSPs)
chr7 (19-291)||(12911052-12911325)
chr7 (21-290)||(40106424-40106696)
chr7 (43-291)||(48653148-48653393)
chr7 (57-291)||(12196075-12196312)
chr7 (119-291)||(10288111-10288284)
chr7 (119-280)||(11035715-11035876)
chr7 (123-291)||(22078344-22078513)
chr7 (70-289)||(49169662-49169884)
chr7 (106-286)||(13163599-13163780)
chr7 (119-291)||(15873296-15873469)
chr7 (35-291)||(21490811-21491070)
chr7 (35-237)||(18366701-18366904)
chr7 (120-269)||(9994036-9994186)
chr7 (26-189)||(3691956-3692122)
chr7 (391-473)||(40106798-40106880)
chr7 (119-218)||(9554537-9554637)
chr7 (398-474)||(18366460-18366536)
chr7 (83-195)||(24056674-24056789)
chr7 (392-474)||(48652966-48653048)
chr7 (398-474)||(21490614-21490690)
chr7 (392-467)||(22078613-22078688)
chr7 (398-474)||(12910867-12910944)
chr7 (391-465)||(3692276-3692351)
chr7 (416-466)||(39184735-39184785)
chr7 (430-474)||(10287917-10287961)
chr7 (430-474)||(15873103-15873147)
chr7 (422-474)||(49169490-49169542)
[»] chr8 (13 HSPs)
chr8 (19-290)||(41957781-41958055)
chr8 (35-290)||(40840846-40841100)
chr8 (107-288)||(6150220-6150402)
chr8 (91-291)||(44436786-44436987)
chr8 (135-291)||(22815653-22815811)
chr8 (119-211)||(35840863-35840955)
chr8 (391-463)||(41957608-41957680)
chr8 (119-212)||(12659338-12659432)
chr8 (393-474)||(26162549-26162631)
chr8 (119-219)||(10250952-10251053)
chr8 (398-474)||(6161737-6161814)
chr8 (175-219)||(28213575-28213619)
chr8 (430-474)||(40840649-40840693)
[»] chr1 (23 HSPs)
chr1 (35-291)||(18472263-18472520)
chr1 (35-283)||(35761359-35761609)
chr1 (119-291)||(43406687-43406860)
chr1 (106-268)||(8422256-8422419)
chr1 (119-291)||(338821-338994)
chr1 (120-291)||(37666500-37666671)
chr1 (119-291)||(6836608-6836782)
chr1 (19-229)||(16075314-16075527)
chr1 (19-219)||(33007044-33007245)
chr1 (19-219)||(19198193-19198388)
chr1 (57-188)||(9536769-9536903)
chr1 (120-219)||(24276100-24276199)
chr1 (117-218)||(33009102-33009204)
chr1 (120-219)||(24055660-24055759)
chr1 (392-460)||(18472094-18472162)
chr1 (119-219)||(16111079-16111184)
chr1 (404-474)||(37666316-37666386)
chr1 (391-476)||(6836881-6836968)
chr1 (436-475)||(51442504-51442543)
chr1 (414-474)||(15973867-15973929)
chr1 (430-472)||(19197952-19197994)
chr1 (430-475)||(339142-339187)
chr1 (430-474)||(43406494-43406538)
[»] chr6 (18 HSPs)
chr6 (35-291)||(13772730-13772988)
chr6 (70-286)||(26182019-26182237)
chr6 (119-291)||(10750949-10751122)
chr6 (119-291)||(32449586-32449759)
chr6 (119-283)||(34636900-34637064)
chr6 (35-251)||(24164418-24164637)
chr6 (119-237)||(23260026-23260144)
chr6 (105-253)||(20559494-20559641)
chr6 (218-282)||(23259961-23260025)
chr6 (391-474)||(13772546-13772629)
chr6 (391-474)||(10750755-10750838)
chr6 (119-202)||(31275943-31276027)
chr6 (119-219)||(11166045-11166146)
chr6 (404-477)||(19814738-19814812)
chr6 (430-475)||(24164818-24164863)
chr6 (119-156)||(31276859-31276896)
chr6 (430-474)||(32449393-32449437)
chr6 (404-474)||(23259757-23259828)
[»] scaffold1838 (1 HSPs)
scaffold1838 (19-291)||(800-1072)
[»] chr3 (21 HSPs)
chr3 (95-291)||(46403920-46404117)
chr3 (57-291)||(43277363-43277601)
chr3 (119-283)||(16976031-16976195)
chr3 (119-291)||(5004049-5004222)
chr3 (119-291)||(7336012-7336185)
chr3 (119-291)||(9104810-9104983)
chr3 (35-291)||(11937211-11937463)
chr3 (119-243)||(8731455-8731581)
chr3 (119-243)||(9083342-9083468)
chr3 (94-203)||(17542113-17542224)
chr3 (392-461)||(11937032-11937101)
chr3 (119-219)||(5704628-5704729)
chr3 (398-479)||(43277163-43277244)
chr3 (143-219)||(1461494-1461571)
chr3 (441-474)||(5704964-5704997)
chr3 (391-474)||(9105083-9105168)
chr3 (430-475)||(16976354-16976399)
chr3 (398-474)||(31283660-31283737)
chr3 (422-475)||(3504511-3504564)
chr3 (421-474)||(17537618-17537671)
chr3 (430-474)||(46403725-46403769)
[»] chr4 (15 HSPs)
chr4 (35-283)||(69929-70177)
chr4 (70-291)||(55162853-55163077)
chr4 (35-289)||(49499686-49499940)
chr4 (119-291)||(40459664-40459837)
chr4 (57-286)||(28968564-28968796)
chr4 (35-277)||(2761427-2761670)
chr4 (474-563)||(1751010-1751099)
chr4 (119-219)||(10276761-10276862)
chr4 (119-195)||(41869381-41869458)
chr4 (209-269)||(34828109-34828169)
chr4 (479-525)||(45796177-45796223)
chr4 (422-474)||(70289-70341)
chr4 (219-279)||(42898347-42898406)
chr4 (484-532)||(45795772-45795820)
chr4 (430-474)||(40459985-40460029)
[»] scaffold0413 (1 HSPs)
scaffold0413 (119-291)||(145-318)
[»] scaffold0657 (3 HSPs)
scaffold0657 (119-291)||(1658-1831)
scaffold0657 (430-477)||(1461-1508)
scaffold0657 (430-477)||(8573-8620)
[»] scaffold0041 (1 HSPs)
scaffold0041 (119-290)||(32669-32838)
[»] scaffold0013 (1 HSPs)
scaffold0013 (19-229)||(242428-242640)
[»] scaffold0120 (1 HSPs)
scaffold0120 (119-219)||(2115-2216)
[»] scaffold0069 (1 HSPs)
scaffold0069 (119-218)||(11410-11510)
[»] scaffold0002 (2 HSPs)
scaffold0002 (119-218)||(356356-356456)
scaffold0002 (441-477)||(356072-356108)
[»] scaffold0028 (1 HSPs)
scaffold0028 (443-477)||(147522-147556)
[»] scaffold0006 (1 HSPs)
scaffold0006 (119-218)||(89870-89970)


Alignment Details
Target: chr2 (Bit Score: 241; Significance: 1e-133; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 19 - 291
Target Start/End: Complemental strand, 40729023 - 40728751
Alignment:
Q  19 gtatatttgtgattttataattgattaaactagtataatgcaaatgaaatatgtgtgaactttacttaaagaatatgacttgaatctattttcttaaata 118  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||     
T  40729023 gtatatttgtgattttgtaattgattaaactagtataatgcaaatgaaatatgtgtgaactttacttaaagaatatgacttgaatgtattttcttaaatc 40728924  T
Q  119 tttttgattgagaagttttgatactatctattttatgacattgttttggtgctttgagtatgaaccaatttagataaagaaattgacacttacactaata 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||| ||||||||| ||||||||||||    
T  40728923 tttttgattgagaagttttgatactatctattttatgacattgttttggtgctttgagtatgaaccaatttgaataaggaaattgacccttacactaata 40728824  T
Q  219 ttttaggtaccaaagaagagatggtctatgctttgaagtttttgcttgaagtgcgtacgggggacaaattggg 291  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40728823 ttttaggtaccaaagaagagatagtctatgctttgaagtttttgcttgaagtgcgtacgggggacaaattggg 40728751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 35 - 288
Target Start/End: Complemental strand, 35670346 - 35670091
Alignment:
Q  35 ataattgattaaactagtataatgcaaatgaaatatgtgtgaactttacttaaaga-atatgacttgaatctattttcttaaatatttttgattgagaag 133  Q
    |||| ||||||||||| ||||| ||||| ||||| ||| ||||||||||||||| | ||||||||||||| ||||||||||||| |||||||||||||||    
T  35670346 ataactgattaaactattataacgcaaaagaaatgtgtatgaactttacttaaaaacatatgacttgaatgtattttcttaaatctttttgattgagaag 35670247  T
Q  134 ttttgatactatctattttatgacattgttt-tggtgctttgagtatgaaccaatttagataaagaaattgacacttacactaatattttaggtaccaaa 232  Q
    ||||||||||||||||||||||||||||||| | |||||||||||| |||||||||| ||||| ||||||||| ||||||||||||||||||||||||||    
T  35670246 ttttgatactatctattttatgacattgtttcttgtgctttgagtaggaaccaatttggataaggaaattgacccttacactaatattttaggtaccaaa 35670147  T
Q  233 gaagagatggtctatgctttgaagtttttgcttgaagtgcgtacgggggacaaatt 288  Q
    ||||||||||| |||||||||||||||||||||||||||||| |||||||||||||    
T  35670146 gaagagatggtatatgctttgaagtttttgcttgaagtgcgttcgggggacaaatt 35670091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 19 - 219
Target Start/End: Complemental strand, 28266745 - 28266544
Alignment:
Q  19 gtatatttgtgattttataattgattaaactagtataatgcaaatgaaatatgtgtgaactttacttaaagaatatgacttgaatctattttcttaaata 118  Q
    ||||||||||||||||||||||||||||| || ||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| |     
T  28266745 gtatatttgtgattttataattgattaaaatattataatgcaaatgaaatgtgtgtgaactttacttaaagaatatgacttgaatgtattttcttaattc 28266646  T
Q  119 tttttgattgagaagttttgatactatctattttatgacattgttt-tggtgctttgagtatgaaccaatttagataaagaaattgacacttacactaat 217  Q
    |||||||||||||||| |||||| | |||||||||||||||||||| ||||||||||||||||||||||||| ||||| ||||||||| |||||| ||||    
T  28266645 tttttgattgagaagtgttgatattgtctattttatgacattgtttctggtgctttgagtatgaaccaatttggataaggaaattgacccttacattaat 28266546  T
Q  218 at 219  Q
    ||    
T  28266545 at 28266544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 35 - 269
Target Start/End: Complemental strand, 12774013 - 12773776
Alignment:
Q  35 ataattgattaaactagtataatgcaaatgaaatatgtgtgaactttac-ttaaagaatatgacttgaatctatttt-cttaaatatttttgattgagaa 132  Q
    |||| ||||||||||| |||||| |||| ||||| |||||||||||||| |||||||||||||||| ||| |||||| ||||| | ||||||||||||||    
T  12774013 ataagtgattaaactattataatacaaaggaaatgtgtgtgaactttaccttaaagaatatgacttaaatgtatttttcttaattctttttgattgagaa 12773914  T
Q  133 gttttgatactatctattttatgacattgttt-tggtgctttgagtatgaaccaatttagataaagaaattgacacttacactaatattttaggtaccaa 231  Q
    |||||| |||||||||| |||||||||||||| | ||||||||||||||||||||||| |||||  |||||||||||||||||||  |||||||||||||    
T  12773913 gttttggtactatctatcttatgacattgtttcttgtgctttgagtatgaaccaatttggataagaaaattgacacttacactaaccttttaggtaccaa 12773814  T
Q  232 agaagagatggtctatgctttgaagtttttgcttgaag 269  Q
    ||||||||| || ||||||| |  ||||||||||||||    
T  12773813 agaagagatagtgtatgcttcggtgtttttgcttgaag 12773776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 123; E-Value: 7e-63
Query Start/End: Original strand, 91 - 291
Target Start/End: Complemental strand, 18292266 - 18292064
Alignment:
Q  91 atatgacttgaatctatttt-cttaaatatttttgattgagaagttttgatactatctattttatgacattgttt-tggtgctttgagtatgaaccaatt 188  Q
    ||||||||||||| |||||| ||||| | ||||||||||| ||||||||||| ||||||||| |||||||||||| |||||||||||| |||||||||||    
T  18292266 atatgacttgaatgtatttttcttaattctttttgattgataagttttgatattatctatttcatgacattgtttctggtgctttgaggatgaaccaatt 18292167  T
Q  189 tagataaagaaattgacacttacactaatattttaggtaccaaagaagagatggtctatgctttgaagtttttgcttgaagtgcgtacgggggacaaatt 288  Q
    | ||||| ||||||||| |||||||||| |||||||||||||||||||||||| | |||||||||||||||||||||||||||| || |||||| |||||    
T  18292166 tggataaggaaattgacccttacactaacattttaggtaccaaagaagagatgatttatgctttgaagtttttgcttgaagtgcatatgggggataaatt 18292067  T
Q  289 ggg 291  Q
    |||    
T  18292066 ggg 18292064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 119 - 291
Target Start/End: Original strand, 40448194 - 40448367
Alignment:
Q  119 tttttgattgagaagttttgatactatctattttatgacattgttttggtgctttgagtatgaaccaatttagataaagaaattgacacttacactaata 218  Q
    |||||||||||||||||||||||||||||||||| || ||||||| | ||||||||||||||||||||||| ||||| ||||||||| ||| |||||| |    
T  40448194 tttttgattgagaagttttgatactatctattttgtggcattgttcttgtgctttgagtatgaaccaatttggataaggaaattgacccttgcactaaca 40448293  T
Q  219 ttttaggtaccaaagaagagatggtctatgctttgaagtttttgcttgaagtgcgtacgggggac-aaattggg 291  Q
    ||||||||||||||||||||||| ||||| |||||||||||||||||||||||| |||||||||| ||||||||    
T  40448294 ttttaggtaccaaagaagagatgatctatactttgaagtttttgcttgaagtgcttacgggggacgaaattggg 40448367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 91 - 286
Target Start/End: Complemental strand, 34397377 - 34397181
Alignment:
Q  91 atatgacttgaatctattttcttaaatatttttgattgagaagttttgatactatctattttatgacattgttt-tggtgctttgagtatgaaccaattt 189  Q
    ||||||||||| | ||||||||||| | ||||||||||| ||||||||||| ||||||||| |||||||||||| |||||||||||||||||| ||||||    
T  34397377 atatgacttgactgtattttcttaattctttttgattgataagttttgatattatctatttcatgacattgtttctggtgctttgagtatgaatcaattt 34397278  T
Q  190 agataaagaaattgacacttacactaatattttaggtaccaaagaagagatggtctatgctttgaagtttttgcttgaagtgcgtacgggggacaaa 286  Q
      |||| ||||||||| |||||||||| |||||||||||||||||||||||| |||  ||||||||||||||||||||||| ||||||||| |||||    
T  34397277 gaataaggaaattgacccttacactaacattttaggtaccaaagaagagatgatctgagctttgaagtttttgcttgaagtacgtacggggaacaaa 34397181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 119 - 288
Target Start/End: Complemental strand, 41339749 - 41339577
Alignment:
Q  119 tttttgattgagaagttttgatactatctattttatgacattgttt-tggtgcttt-gagtatgaaccaatttagataaagaaattgacacttacactaa 216  Q
    ||||| ||||| ||||||||||| |||||| |||||||| |||||| ||||||||| |||||||||||||||| ||||| ||||||||| ||||||||||    
T  41339749 ttttttattgataagttttgatattatctactttatgactttgtttatggtgcttttgagtatgaaccaatttggataaggaaattgacccttacactaa 41339650  T
Q  217 tattttaggtaccaaagaagagatggtctatgctttgaagt-ttttgcttgaagtgcgtacgggggacaaatt 288  Q
    |||||||||||| |||||| |||||||| |||||||||||| |||||||||||||||||| ||||||||||||    
T  41339649 tattttaggtacgaaagaaaagatggtccatgctttgaagttttttgcttgaagtgcgtatgggggacaaatt 41339577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 91 - 286
Target Start/End: Original strand, 44789190 - 44789385
Alignment:
Q  91 atatgacttgaatctattttc-ttaaatatttttgattgagaagttttgatactatctattttatgacattgttttg-gtgctttgagtatgaaccaatt 188  Q
    ||||||||||||| ||||||  |||| | || |||||||| ||||||||||| ||||||||||||||||| ||||   ||||||||||||||||||||||    
T  44789190 atatgacttgaatgtatttttattaattcttgttgattgataagttttgatattatctattttatgacatagtttcctgtgctttgagtatgaaccaatt 44789289  T
Q  189 tagataaagaaattgacacttacactaatattttaggtaccaaagaagagatggtctatgctttgaagtttttgcttgaagtgcgtacgggggacaaa 286  Q
    | ||||| ||||||||| || ||||||| |||||||||||||||||  |||||||||||||||||||||| |||| ||||||||||||  ||||||||    
T  44789290 tggataaggaaattgaccctcacactaacattttaggtaccaaaga--agatggtctatgctttgaagttattgcctgaagtgcgtacatgggacaaa 44789385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 391 - 466
Target Start/End: Complemental strand, 40728651 - 40728576
Alignment:
Q  391 gatgatgaaaagaaaatagtagtaattttcgaaaataagaatgaattaggagtaatgtcttggatcaaaatccggg 466  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||    
T  40728651 gatgatgaaaagaaaatagtagtaattttcgaaaatgagaatgaattaggagtaatgtcttggatcaaaattcggg 40728576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 24 - 237
Target Start/End: Original strand, 29271197 - 29271415
Alignment:
Q  24 tttgtgattttataattgattaaactagtataat-gcaaatgaaatatgtgtgaactttacttaaagaatatgac-ttgaatctatttt-cttaaatatt 120  Q
    ||||||||||||||||||||||||||| | || | ||||| ||||| |||||||| ||| ||||||| || |||| ||| || |||||| ||||   ||     
T  29271197 tttgtgattttataattgattaaactattttatttgcaaaggaaatgtgtgtgaatttttcttaaagtatgtgacattggatgtatttttcttattcatg 29271296  T
Q  121 tttgattgagaagttttgatactatctattttatgacattgttt-tggtgctttgagtatgaaccaatttagataaagaaattga-cacttacactaata 218  Q
    |||||||||||| |||||||| ||||||||||| |||| ||||| | ||||||| ||||||||||||||| || || |||||||| | | ||||| || |    
T  29271297 tttgattgagaatttttgatattatctattttacgacactgtttcttgtgcttttagtatgaaccaatttggacaaggaaattgagcccatacaccaaca 29271396  T
Q  219 ttttaggtaccaaagaaga 237  Q
    ||||||||| |||||||||    
T  29271397 ttttaggtatcaaagaaga 29271415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 391 - 476
Target Start/End: Complemental strand, 41339474 - 41339389
Alignment:
Q  391 gatgatgaaaagaaaatagtagtaattttcgaaaataagaatgaattaggagtaatgtcttggatcaaaatccgggacgttacatt 476  Q
    |||||| |||||||||||||||||||||| |||||| ||||||||||||| ||||||||||||||||||||||||| ||| |||||    
T  41339474 gatgataaaaagaaaatagtagtaatttttgaaaatgagaatgaattaggcgtaatgtcttggatcaaaatccggggcgtcacatt 41339389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 119 - 219
Target Start/End: Complemental strand, 23827883 - 23827782
Alignment:
Q  119 tttttgattgagaagttttgatactatctattttatgacattgttt-tggtgctttgagtatgaaccaatttagataaagaaattgacacttacactaat 217  Q
    |||||||| |||||| ||| |||||||||||||||   |||||||| | ||||||||||||||||||||||| ||||| |||||| || |||||| ||||    
T  23827883 tttttgatcgagaagattttatactatctattttagagcattgtttcttgtgctttgagtatgaaccaatttggataaggaaattaacccttacattaat 23827784  T
Q  218 at 219  Q
    ||    
T  23827783 at 23827782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 410 - 474
Target Start/End: Complemental strand, 35669687 - 35669623
Alignment:
Q  410 tagtaattttcgaaaataagaatgaattaggagtaatgtcttggatcaaaatccgggacgttaca 474  Q
    ||||| ||||||||||| ||||||||||||| ||||||||||| |||||||||| || |||||||    
T  35669687 tagtacttttcgaaaatgagaatgaattaggcgtaatgtcttgaatcaaaatccagggcgttaca 35669623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 119 - 195
Target Start/End: Original strand, 11387654 - 11387731
Alignment:
Q  119 tttttgattgagaagttttgatactatctattttatgacattgttt-tggtgctttgagtatgaaccaatttagataa 195  Q
    |||||||| |||||| ||| ||| |||||||||||  | ||||||| | ||||||||||||||||||||||| |||||    
T  11387654 tttttgatcgagaagattttatattatctattttagaatattgtttattgtgctttgagtatgaaccaatttggataa 11387731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 430 - 474
Target Start/End: Original strand, 40448515 - 40448559
Alignment:
Q  430 aatgaattaggagtaatgtcttggatcaaaatccgggacgttaca 474  Q
    ||||| ||||| ||||||||||||| ||||||||||| |||||||    
T  40448515 aatgatttaggcgtaatgtcttggaccaaaatccggggcgttaca 40448559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 218; Significance: 1e-119; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 22 - 291
Target Start/End: Original strand, 38001595 - 38001864
Alignment:
Q  22 tatttgtgattttataattgattaaactagtataatgcaaatgaaatatgtgtgaactttacttaaagaatatgacttgaatctattttcttaaatattt 121  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| | |||| |||    
T  38001595 tatttgtgattttataattgattaaactagtataatgcaaatgaaatatgtgtgaactttactttaagaatatgacttgaatgtattttttaaaatcttt 38001694  T
Q  122 ttgattgagaagttttgatactatctattttatgacattgttttggtgctttgagtatgaaccaatttagataaagaaattgacacttacactaatattt 221  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| ||||| ||||||| | |||||||||||||||    
T  38001695 ttgattgagaagttttgatactatctattttatgacattgttttggtgttttgtgtatgaaccaatttggataaggaaattggctcttacactaatattt 38001794  T
Q  222 taggtaccaaagaagagatggtctatgctttgaagtttttgcttgaagtgcgtacgggggacaaattggg 291  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  38001795 taggtatcaaagaagagatggtctatgctttgaagtttttgcttgaagtgcgtacgagggacaaattggg 38001864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 19 - 291
Target Start/End: Original strand, 30910371 - 30910644
Alignment:
Q  19 gtatatttgtgattttataattgattaaactagtataatgcaaatgaaatatgtgtgaactttacttaaagaatatgacttgaatctattttcttaaata 118  Q
    |||||||||||||||||||||||||||||||| ||||||| |||||||||||| ||||||||||||||||||||||||||||||| || |||| |||||     
T  30910371 gtatatttgtgattttataattgattaaactattataatgtaaatgaaatatgcgtgaactttacttaaagaatatgacttgaatgtaatttcataaatc 30910470  T
Q  119 tttttgattgagaagttttgatactatctattttatgacattgttt-tggtgctttgagtatgaaccaatttagataaagaaattgacacttacactaat 217  Q
    ||||||||||||||||||||||| |||||| ||||||||||||||| ||||| ||||||||||||||||||| ||||| ||||||||| |||||||||||    
T  30910471 tttttgattgagaagttttgatattatctactttatgacattgtttatggtgttttgagtatgaaccaatttggataaggaaattgacccttacactaat 30910570  T
Q  218 attttaggtaccaaagaagagatggtctatgctttgaagtttttgcttgaagtgcgtacgggggacaaattggg 291  Q
    ||||||||||| |||||||||||||| ||||||||||||||||||||| ||||||||||| || ||||||||||    
T  30910571 attttaggtacgaaagaagagatggtttatgctttgaagtttttgcttaaagtgcgtacgaggaacaaattggg 30910644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 181; E-Value: 2e-97
Query Start/End: Original strand, 35 - 290
Target Start/End: Original strand, 42862002 - 42862258
Alignment:
Q  35 ataattgattaaactagtataatgcaaatgaaatatgtgtgaactttacttaaaga-atatgacttgaatctattttcttaaatatttttgattgagaag 133  Q
    |||| ||||||||||| ||||||||||| ||||| ||| ||||||||||||||| | ||||||||| ||| ||||||||||||| |||||||||||||||    
T  42862002 ataagtgattaaactattataatgcaaaagaaatgtgtatgaactttacttaaaaacatatgacttaaatgtattttcttaaatctttttgattgagaag 42862101  T
Q  134 ttttgatactatctattttatgacattgttttggtgctttgagtatgaaccaatttagataaagaaattgacacttacactaatattttaggtaccaaag 233  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |||||  |||||||| |||||||||||||||||||||||||||    
T  42862102 ttttgatactatctattttatgacattgttttggtgctttgagtataaactaatttggataagaaaattgacccttacactaatattttaggtaccaaag 42862201  T
Q  234 aagagatggtctatgctttgaagtttttgcttgaagtgcgtacgggggacaaattgg 290  Q
    |||||||| | ||||||||||||||||||||||||||||||||||||||||||||||    
T  42862202 aagagatgatttatgctttgaagtttttgcttgaagtgcgtacgggggacaaattgg 42862258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 133; E-Value: 7e-69
Query Start/End: Original strand, 57 - 282
Target Start/End: Original strand, 40691524 - 40691752
Alignment:
Q  57 tgcaaatgaaatatgtgtgaactttac-ttaaagaatatgacttgaatctatttt-cttaaatatttttgattgagaagttttgatactatctattttat 154  Q
    ||||||||| || ||||||||| |||| || ||| ||||||||||||| |||||| ||||| | ||||||||||| ||||||| ||| ||||||||||||    
T  40691524 tgcaaatgagatgtgtgtgaaccttaccttgaagcatatgacttgaatgtatttttcttaattctttttgattgataagttttaatattatctattttat 40691623  T
Q  155 gacattgttt-tggtgctttgagtatgaaccaatttagataaagaaattgacacttacactaatattttaggtaccaaagaagagatggtctatgctttg 253  Q
    || ||||||| ||||||||||||||||||||||||| ||||| ||||||||| |||||||||| |||||||||||||||||||| ||||||||||||||     
T  40691624 gatattgtttctggtgctttgagtatgaaccaatttggataaggaaattgacccttacactaacattttaggtaccaaagaagatatggtctatgcttta 40691723  T
Q  254 aagtttttgcttgaagtgcgtacggggga 282  Q
    |||||||||||||||||||||||||||||    
T  40691724 aagtttttgcttgaagtgcgtacggggga 40691752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 119 - 291
Target Start/End: Original strand, 537533 - 537706
Alignment:
Q  119 tttttgattgagaagttttgatactatctattttatgacattgttttggtgctttgagtatgaaccaatttagataaagaaattgacacttacactaata 218  Q
    |||||||||||||||||||||||||||||||||| || ||||||| | |||||||| |||||||||||||| ||||| ||||||||| |||||||||| |    
T  537533 tttttgattgagaagttttgatactatctattttgtggcattgttcttgtgctttgggtatgaaccaatttggataaggaaattgacccttacactaaca 537632  T
Q  219 ttttaggtaccaaagaagagatggtctatgctttgaagtttttgcttgaagtgcgtacgggggac-aaattggg 291  Q
    ||||||||||||||||||||||| |||||||||||||||||||||| ||||||| |||||||||| ||||||||    
T  537633 ttttaggtaccaaagaagagatgatctatgctttgaagtttttgctggaagtgcatacgggggacgaaattggg 537706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 122 - 281
Target Start/End: Original strand, 6309411 - 6309571
Alignment:
Q  122 ttgattgagaagttttgatactatctattttatgacattgttt-tggtgctttgagtatgaaccaatttagataaagaaattgacacttacactaatatt 220  Q
    |||||||| ||||||||||| |||||| | |||||||| |||| ||||||||||||||||||||||||| ||||| ||||||||| |||||||||| |||    
T  6309411 ttgattgataagttttgatattatctaatatatgacatagtttctggtgctttgagtatgaaccaatttggataaggaaattgacccttacactaacatt 6309510  T
Q  221 ttaggtaccaaagaagagatggtctatgctttgaagtttttgcttgaagtgcgtacggggg 281  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  6309511 ttaggtaccaaagaagagatggtctatgctttgaagtttttgcttgaagtgcatacggggg 6309571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 224 - 291
Target Start/End: Complemental strand, 4557450 - 4557383
Alignment:
Q  224 ggtaccaaagaagagatggtctatgctttgaagtttttgcttgaagtgcgtacgggggacaaattggg 291  Q
    |||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  4557450 ggtaccaatgaagagatggtctatgctttgaagtttttgtttgaagtgcgtacgggggacaaattggg 4557383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 392 - 474
Target Start/End: Original strand, 6309696 - 6309778
Alignment:
Q  392 atgatgaaaagaaaatagtagtaattttcgaaaataagaatgaattaggagtaatgtcttggatcaaaatccgggacgttaca 474  Q
    ||||| ||||||||||||||| |||||| |||||| ||||||||||||| |||||||||| |||||||||||||||| |||||    
T  6309696 atgataaaaagaaaatagtagaaatttttgaaaatgagaatgaattaggcgtaatgtcttagatcaaaatccgggaccttaca 6309778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 398 - 474
Target Start/End: Original strand, 30916242 - 30916318
Alignment:
Q  398 aaaagaaaatagtagtaattttcgaaaataagaatgaattaggagtaatgtcttggatcaaaatccgggacgttaca 474  Q
    |||||||||||||||||||||| |||||| ||| ||||||||| |||||||||||||||||| || |||||||||||    
T  30916242 aaaagaaaatagtagtaatttttgaaaatgagagtgaattaggcgtaatgtcttggatcaaattctgggacgttaca 30916318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 23 - 205
Target Start/End: Original strand, 23211068 - 23211248
Alignment:
Q  23 atttgtgattttataattgattaaactagtataatgcaaatgaaatatgtgtgaactttacttaaagaatatgacttgaatctattttcttaaatatttt 122  Q
    ||||||||||| |||||||| ||||||  | ||  ||||| || || ||| || ||||  ||||||| ||||||||||| | || |||  ||  ||||||    
T  23211068 atttgtgatttaataattgactaaactcatttatagcaaaagagatttgtatggacttatcttaaagtatatgacttgattttacttt--tatttatttt 23211165  T
Q  123 tgattgagaagttttgatactatctattttatgacattgttttggtgctttgagtatgaaccaatttagataaagaaattgac 205  Q
    | || ||||| ||||||||||||||| ||| || ||||||| | ||||||||||||||||||||||| ||||| |||||||||    
T  23211166 ttatcgagaaattttgatactatctactttgtggcattgttattgtgctttgagtatgaaccaatttggataaggaaattgac 23211248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 392 - 463
Target Start/End: Original strand, 38279398 - 38279469
Alignment:
Q  392 atgatgaaaagaaaatagtagtaattttcgaaaataagaatgaattaggagtaatgtcttggatcaaaatcc 463  Q
    ||||| |||||||||||||||||||||||||||||  |||||||||||| ||||||||| ||||||||||||    
T  38279398 atgataaaaagaaaatagtagtaattttcgaaaatgtgaatgaattaggcgtaatgtctaggatcaaaatcc 38279469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 392 - 478
Target Start/End: Original strand, 42862360 - 42862447
Alignment:
Q  392 atgatgaaaagaaaatagtagtaattttcgaaaataagaatgaattaggagtaatgtcttggat-caaaatccgggacgttacattaa 478  Q
    ||||| ||||||||||||||||||||||||||||| |||||||||||||  |||||||||||||  |||||| ||| |||||||||||    
T  42862360 atgataaaaagaaaatagtagtaattttcgaaaatgagaatgaattaggcataatgtcttggataaaaaatctggggcgttacattaa 42862447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 242 - 290
Target Start/End: Original strand, 42640266 - 42640314
Alignment:
Q  242 gtctatgctttgaagtttttgcttgaagtgcgtacgggggacaaattgg 290  Q
    ||||||||||||||||||||||||||||||||||||| |||| ||||||    
T  42640266 gtctatgctttgaagtttttgcttgaagtgcgtacggtggacgaattgg 42640314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 20 - 141
Target Start/End: Original strand, 27026967 - 27027089
Alignment:
Q  20 tatatttgtgattttataattgattaaactagtataatgcaaatgaaatatgtgtgaacttta-cttaaagaatatgacttgaatctattttcttaaata 118  Q
    |||||||||| ||| |||||||||||||||| | || |||||| |||||  ||||||| |||| | ||||| | || ||||| || ||||||  | |||     
T  27026967 tatatttgtgttttgataattgattaaactattttattgcaaaggaaatgcgtgtgaattttaccctaaaggacataacttggatgtatttttcttaatt 27027066  T
Q  119 tttttgattgagaagttttgata 141  Q
    |||||||||||||||||||||||    
T  27027067 tttttgattgagaagttttgata 27027089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 257 - 291
Target Start/End: Original strand, 38279263 - 38279297
Alignment:
Q  257 tttttgcttgaagtgcgtacgggggacaaattggg 291  Q
    |||||||||||||||||||||||||||||||||||    
T  38279263 tttttgcttgaagtgcgtacgggggacaaattggg 38279297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 107 - 164
Target Start/End: Complemental strand, 4557510 - 4557453
Alignment:
Q  107 ttttcttaaatatttttgattgagaagttttgatactatctattttatgacattgttt 164  Q
    ||||||||| | |||||||| |  ||||||||||| ||||||||||||||||||||||    
T  4557510 ttttcttaattctttttgataggtaagttttgatattatctattttatgacattgttt 4557453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 398 - 474
Target Start/End: Original strand, 40691855 - 40691932
Alignment:
Q  398 aaaagaaaatagtagtaattttcgaaaa-taagaatgaattaggagtaatgtcttggatcaaaatccgggacgttaca 474  Q
    |||| ||||||||||| |||||| |||| | | ||| | ||||| ||||||||||||||||||||||||| |||||||    
T  40691855 aaaaaaaaatagtagtgattttctaaaaatgaaaataatttaggcgtaatgtcttggatcaaaatccggggcgttaca 40691932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 416 - 471
Target Start/End: Original strand, 25674365 - 25674420
Alignment:
Q  416 ttttcgaaaataagaatgaattaggagtaatgtcttggatcaaaatccgggacgtt 471  Q
    |||| |||||| | ||||| ||||| |||||||||||||| |||||||||||||||    
T  25674365 ttttagaaaatgaaaatgatttaggcgtaatgtcttggattaaaatccgggacgtt 25674420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 430 - 474
Target Start/End: Original strand, 537855 - 537899
Alignment:
Q  430 aatgaattaggagtaatgtcttggatcaaaatccgggacgttaca 474  Q
    ||||| ||||| ||||||||||||| ||||||||||| |||||||    
T  537855 aatgatttaggcgtaatgtcttggaccaaaatccggggcgttaca 537899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 210; Significance: 1e-115; HSPs: 27)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 19 - 291
Target Start/End: Complemental strand, 12911325 - 12911052
Alignment:
Q  19 gtatatttgtgattttataattgattaaactagtataatgcaaatgaaatatgtgtgaactttacttaaagaatatgacttgaatctattttcttaaata 118  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| |||||||||| ||||||||||||| ||||||||||||      
T  12911325 gtatatttgtgattttataattgattaaactattataatgcaaatgaaatatgtgcgaaccttacttaaaggatatgacttgaatgtattttcttaaacc 12911226  T
Q  119 tttttgattgagaagttttgatactatctattttatgacattgttt-tggtgctttgagtatgaaccaatttagataaagaaattgacacttacactaat 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| |||||  |||||||| |||||||||||    
T  12911225 tttttgattgagaagttttgatactatctattttatgacattgtttcttgtgctttgagtatgaaccaatttggataagaaaattgacccttacactaat 12911126  T
Q  218 attttaggtaccaaagaagagatggtctatgctttgaagtttttgcttgaagtgcgtacgggggacaaattggg 291  Q
    |||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12911125 attttaggtaccaaagcagatatggtctatgctttgaagtttttgcttgaagtgcgtacgggggacaaattggg 12911052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 21 - 290
Target Start/End: Original strand, 40106424 - 40106696
Alignment:
Q  21 atatttgtgattttataattgatt-aaactagtataatgcaaatgaaatatgtgtgaactttacttaaagaatatgacttgaatctatttt-cttaaata 118  Q
    |||||||||||||||||||||||| |||||| ||||||||||||||||| |||||||||||||||||||||  ||||||||||| |||||| |||| ||     
T  40106424 atatttgtgattttataattgatttaaactattataatgcaaatgaaatgtgtgtgaactttacttaaagacaatgacttgaatgtatttttcttatatc 40106523  T
Q  119 tttttgattgagaagttttgatactatctattttatgacattgttt-tggtgctttgagtatgaaccaatttagataaagaaattgacacttacactaat 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| ||||  ||||||||| |||||| |||     
T  40106524 tttttgattgagaagttttgatactatctattttatgacattgtttcttgtgctttgagtatgaaccaatttggatatggaaattgacccttacattaaa 40106623  T
Q  218 attttaggtaccaaagaagagatggtctatgctttgaagtttttgcttgaagtgcgtacgggggacaaattgg 290  Q
    |||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  40106624 attttaggtacctaagaagagattgtctatgctttgaagtttttgcttgaagtgcgtacgggggacaaattgg 40106696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 153; E-Value: 8e-81
Query Start/End: Original strand, 43 - 291
Target Start/End: Complemental strand, 48653393 - 48653148
Alignment:
Q  43 ttaaactagtataatgcaaatgaaatatgtgtgaactttacttaaaga-atatgacttgaatctattttcttaaatatttttgattgagaagttttgata 141  Q
    |||||||| ||||||||||| ||||| ||| ||||||||||||||| | ||||||||||||| ||||||||||||| |||||||||||||||||||||||    
T  48653393 ttaaactattataatgcaaaagaaatgtgtatgaactttacttaaaaacatatgacttgaatgtattttcttaaatctttttgattgagaagttttgata 48653294  T
Q  142 ctatctattttatgacattgttt-tggtgctttgagtatgaaccaatttagataaagaaattgacacttacactaatattttaggtaccaaagaagagat 240  Q
     ||||||||      |||||||| | ||||||||||||||||||||||| ||||| ||||||||| |||||| |||||||||||||||||||||||||||    
T  48653293 ttatctatt------cattgtttcttgtgctttgagtatgaaccaatttggataaggaaattgacccttacattaatattttaggtaccaaagaagagat 48653200  T
Q  241 ggtctatgctttgaagtttttgcttgaagtgcgta-cgggggacaaattggg 291  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  48653199 ggtctatgctttgaagtttttgcttgaagtgcgtaccgggggacaaattggg 48653148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 57 - 291
Target Start/End: Complemental strand, 12196312 - 12196075
Alignment:
Q  57 tgcaaatgaaatatgtgtgaactttactta-aagaatatgacttgaatctatttt-cttaaatatttttgattgagaagttttgatactatctattttat 154  Q
    ||||||| | || ||||||||| ||||||  ||| ||||||||||||| |||||| ||||| | ||||||||||| |||||||| || ||||||||| ||    
T  12196312 tgcaaataagatgtgtgtgaaccttactttgaagcatatgacttgaatgtatttttcttaattctttttgattgataagttttgctattatctatttcat 12196213  T
Q  155 gacattgttt-tggtgctttgagtatgaaccaatttagataaagaaattgacacttacactaatattttaggtaccaaagaagagatggtctatgctttg 253  Q
    |||||||||| ||||||||||||||||||||||||| ||||| ||||||||| |||||||||| |||||||||||||||||||||||||||||| |||||    
T  12196212 gacattgtttatggtgctttgagtatgaaccaatttggataaggaaattgactcttacactaacattttaggtaccaaagaagagatggtctatactttg 12196113  T
Q  254 aagtttttgcttgaagtgcgtacgggggacaaattggg 291  Q
    ||||||||||||||||||||||||||||||||||||||    
T  12196112 aagtttttgcttgaagtgcgtacgggggacaaattggg 12196075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 119 - 291
Target Start/End: Complemental strand, 10288284 - 10288111
Alignment:
Q  119 tttttgattgagaagttttgatactatctattttatgacattgttttggtgctttgagtatgaaccaatttagataaagaaattgacacttacactaata 218  Q
    |||||||||||||||||||||||||||||||||| || ||||||| | ||||||||||||||||||||||| ||||| ||||||||| |||||||||| |    
T  10288284 tttttgattgagaagttttgatactatctattttgtggcattgttcttgtgctttgagtatgaaccaatttggataaggaaattgacccttacactaaca 10288185  T
Q  219 ttttaggtaccaaagaagagatggtctatgctttgaagtttttgcttgaagtgcgtacgggggac-aaattggg 291  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  10288184 ttttaggtaccaaagaagagatgatctatgctttgaagtttttgcttgaagtgcgtacgggggacgaaattggg 10288111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 119 - 280
Target Start/End: Complemental strand, 11035876 - 11035715
Alignment:
Q  119 tttttgattgagaagttttgatactatctattttatgacattgttttggtgctttgagtatgaaccaatttagataaagaaattgacacttacactaata 218  Q
    |||||||||||||||||||||||||||||||||| || ||||||| | ||||||||||||||||||||||| ||||| ||||||||| |||||||||| |    
T  11035876 tttttgattgagaagttttgatactatctattttgtggcattgttcttgtgctttgagtatgaaccaatttggataaggaaattgacccttacactaaca 11035777  T
Q  219 ttttaggtaccaaagaagagatggtctatgctttgaagtttttgcttgaagtgcgtacgggg 280  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11035776 ttttaggtaccaaagaagagatggtctatgctttgaagtttttgcttgaagtgcgtacgggg 11035715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 123 - 291
Target Start/End: Original strand, 22078344 - 22078513
Alignment:
Q  123 tgattgagaagttttgatactatctattttatgacattgttttggtgctttgagt-atgaaccaatttagataaagaaattgacacttacactaatattt 221  Q
    |||||||||||||||||||||||||||||| || ||||||| | || |||||||| |||||||||||| ||||| ||||||||| |||||||||||||||    
T  22078344 tgattgagaagttttgatactatctattttgtggcattgttcttgtactttgagttatgaaccaatttggataaggaaattgacccttacactaatattt 22078443  T
Q  222 taggtaccaaagaagagatggtctatgctttgaagtttttgcttgaagtgcgtacgggggacaaattggg 291  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  22078444 taggtaccaaagaagagatggtctatgctttgaagtttttgcttgaagtgcgtacgggggacatattggg 22078513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 123; E-Value: 7e-63
Query Start/End: Original strand, 70 - 289
Target Start/End: Complemental strand, 49169884 - 49169662
Alignment:
Q  70 tgtgtgaactttactta-aagaatatgacttgaatcta-ttttcttaaatatttttgattgagaagttttgatactatctattttatgacattgttt-tg 166  Q
    ||||||||| ||||||  ||| || |||||||||| || ||||||||| | ||||||||||| ||||||||||| |||||||||||||||||||||| ||    
T  49169884 tgtgtgaaccttactttgaagcatgtgacttgaatgtaattttcttaattctttttgattgataagttttgatattatctattttatgacattgtttctg 49169785  T
Q  167 gtgctttgagtatgaaccaatttagataaagaaattgacacttacactaatattttaggtaccaaagaagagatggtctatgctttgaagtttttgcttg 266  Q
    ||||||||||||||||||||||| |||||  |||||||| | |||| ||| |||||||||||||||||||||||| |||||| |||||||||||||||||    
T  49169784 gtgctttgagtatgaaccaatttggataagaaaattgacccctacattaacattttaggtaccaaagaagagatgttctatgatttgaagtttttgcttg 49169685  T
Q  267 aagtgcgtacgggggacaaattg 289  Q
    ||||||||||| |||||||||||    
T  49169684 aagtgcgtacgtgggacaaattg 49169662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 106 - 286
Target Start/End: Complemental strand, 13163780 - 13163599
Alignment:
Q  106 attttcttaaatatttttgattgagaagttttgatactatctattttatgacattgttt-tggtgctttgagtatgaaccaatttagataaagaaattga 204  Q
    |||||||||| | ||||| ||||| ||||||||||| |||||| ||||||||||||||| ||||||||||||||||||||||||| | ||| ||||||||    
T  13163780 attttcttaattcttttttattgataagttttgatattatctaatttatgacattgtttctggtgctttgagtatgaaccaatttggttaaggaaattga 13163681  T
Q  205 cacttacactaatattttaggtaccaaagaagagatggtctatgctttgaagtttttgcttgaagtgcgtacgggggacaaa 286  Q
    | |||||||||||||||||| |||||||||| |||||||||||||||||||||||||| |||||||||||||| ||||||||    
T  13163680 cccttacactaatattttagataccaaagaatagatggtctatgctttgaagtttttgtttgaagtgcgtacgagggacaaa 13163599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 119 - 291
Target Start/End: Complemental strand, 15873469 - 15873296
Alignment:
Q  119 tttttgattgagaagttttgatactatctattttatgacattgttttggtgctttgagtatgaaccaatttagataaagaaattgacacttacactaata 218  Q
    |||||||||||||||||||||||||||||||||| || ||||||| | ||||||||||||||||||||||| ||||| ||||||||| ||| |||||| |    
T  15873469 tttttgattgagaagttttgatactatctattttgtggcattgttcttgtgctttgagtatgaaccaatttggataaggaaattgacccttgcactaaca 15873370  T
Q  219 ttttaggtaccaaagaagagatggtctatgctttgaagtttttgcttgaagtgcgtacgggggac-aaattggg 291  Q
    ||||||||||||||||||||||| |||||||||||||||||||||| ||||||  |||||||||| ||||||||    
T  15873369 ttttaggtaccaaagaagagatgatctatgctttgaagtttttgctggaagtgtatacgggggacgaaattggg 15873296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 35 - 291
Target Start/End: Complemental strand, 21491070 - 21490811
Alignment:
Q  35 ataattgattaaactagtataatgcaaatgaaatatgtgtgaactttacttaaagaatatgacttgaatctattttc-ttaaatatttttgattgagaag 133  Q
    |||| ||||||||||| ||||| ||||| ||||| ||||||||| ||| |||||| |||| |||||||| ||||||| |||  | ||||| |||||||||    
T  21491070 ataagtgattaaactattataaagcaaaagaaat-tgtgtgaaccttatttaaagcatataacttgaatgtattttccttatttctttttaattgagaag 21490972  T
Q  134 ttttgata----ctatctattttatgacattgttt-tggtgctttgagtatgaaccaatttagataaagaaattgacacttacactaatattttaggtac 228  Q
    ||||||||    ||||||||||||||||||||||| | ||||||||||||||||||||||| ||||| ||||||||| |||||||||| |||||||||||    
T  21490971 ttttgatatatactatctattttatgacattgtttcttgtgctttgagtatgaaccaatttggataaggaaattgacccttacactaacattttaggtac 21490872  T
Q  229 caaagaagagatggtctatgctttgaagtttttgcttgaagtgcgtacgggggacaaattggg 291  Q
    ||||||||| || || |||||||||  | |||||||||||| |||| ||||| | ||||||||    
T  21490871 caaagaagacat-gtgtatgctttggtg-ttttgcttgaagcgcgtgcggggaagaaattggg 21490811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 35 - 237
Target Start/End: Complemental strand, 18366904 - 18366701
Alignment:
Q  35 ataattgattaaactagtataatgcaaatgaaatatgtgtgaactttacttaaagaatatgacttgaatctattttc-ttaaatatttttgattgagaag 133  Q
    |||| ||||||||||| ||||| ||||| ||||| ||||||||  ||| |||||| |||| |||||||| ||||||| |||  | ||||| |||||||||    
T  18366904 ataagtgattaaactattataaagcaaaagaaat-tgtgtgaagcttatttaaagcatataacttgaatgtattttccttatttctttttaattgagaag 18366806  T
Q  134 ttttgatactatctattttatgacattgttt-tggtgctttgagtatgaaccaatttagataaagaaattgacacttacactaatattttaggtaccaaa 232  Q
    ||||||||||||||||||||||||||||||| | |||||||| |||||||||||||| ||||| ||||||||| |||||||||| |||||||||||||||    
T  18366805 ttttgatactatctattttatgacattgtttcttgtgctttgggtatgaaccaatttggataaggaaattgacccttacactaacattttaggtaccaaa 18366706  T
Q  233 gaaga 237  Q
    |||||    
T  18366705 gaaga 18366701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 120 - 269
Target Start/End: Original strand, 9994036 - 9994186
Alignment:
Q  120 ttttgattgagaagttttgatactatctattttatgacattgttttggtgctttgagtatgaaccaatttagataaagaaatt-gacacttacactaata 218  Q
    |||| |||||||||||||||||||||||||||| || ||||||| | ||||||||||||||||||||||| ||||| |||||| | | || ||||||| |    
T  9994036 tttttattgagaagttttgatactatctattttgtggcattgttcttgtgctttgagtatgaaccaatttggataaggaaattggcccctaacactaaca 9994135  T
Q  219 ttttaggtaccaaagaagagatggtctatgctttgaagtttttgcttgaag 269  Q
    ||||||||| ||||||||| ||||| |||||||||  ||||||||||||||    
T  9994136 ttttaggtatcaaagaagacatggtgtatgctttggtgtttttgcttgaag 9994186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 26 - 189
Target Start/End: Original strand, 3691956 - 3692122
Alignment:
Q  26 tgtgattttataattgattaaactagtataatgcaaatgaaatatgtgtgaactttacttaaagaatatgacttgaatcta-ttttcttaaatatttttg 124  Q
    |||||||| |||||||||||||||| |||| |||||| ||||| ||| |||||||| ||||||   |||||||||||| || ||||||||  | ||||||    
T  3691956 tgtgatttcataattgattaaactattatattgcaaaggaaatgtgtctgaacttttcttaaaacgtatgacttgaatgtatttttcttatttctttttg 3692055  T
Q  125 attgagaagttttgatactatctattttat--gacattgttttggtgctttgagtatgaaccaattt 189  Q
    |||||||||||||||||| ||||||||| |  ||  || || | |||||||||||||||||||||||    
T  3692056 attgagaagttttgataccatctatttttttggaattttttcttgtgctttgagtatgaaccaattt 3692122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 391 - 473
Target Start/End: Original strand, 40106798 - 40106880
Alignment:
Q  391 gatgatgaaaagaaaatagtagtaattttcgaaaataagaatgaattaggagtaatgtcttggatcaaaatccgggacgttac 473  Q
    |||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| | ||||||    
T  40106798 gatgataaaaagaaaatagtagtaattttctaaaatgagaatgaattaggagtaatgtcttggatcaaaatccgaggcgttac 40106880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 119 - 218
Target Start/End: Complemental strand, 9554637 - 9554537
Alignment:
Q  119 tttttgattgagaagttttgatactatctattttatgacattgttt-tggtgctttgagtatgaaccaatttagataaagaaattgacacttacactaat 217  Q
    ||||||||| |||||||||||||||||||| ||||| ||||||||| | ||||||||||||||||||| |||||||||  |||||||| |||||| ||||    
T  9554637 tttttgattaagaagttttgatactatctactttataacattgtttcttgtgctttgagtatgaaccagtttagataagaaaattgacccttacattaat 9554538  T
Q  218 a 218  Q
    |    
T  9554537 a 9554537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 398 - 474
Target Start/End: Complemental strand, 18366536 - 18366460
Alignment:
Q  398 aaaagaaaatagtagtaattttcgaaaataagaatgaattaggagtaatgtcttggatcaaaatccgggacgttaca 474  Q
    ||||||||||||||||||||||||||||| ||||||| ||||| |||||||||||||||||||| |||| |||||||    
T  18366536 aaaagaaaatagtagtaattttcgaaaatgagaatgatttaggcgtaatgtcttggatcaaaattcggggcgttaca 18366460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 83 - 195
Target Start/End: Complemental strand, 24056789 - 24056674
Alignment:
Q  83 cttaaagaatatgactt-gaatctatttt-cttaaatatttttgattgagaagttttgatactatctattttatgacattgttt-tggtgctttgagtat 179  Q
    ||||||| ||||||||| |||| |||||| ||||  | ||||||||||||||||||||||| |||||||||||||||||||||| | |||||||||||||    
T  24056789 cttaaagtatatgacttagaatgtatttttcttatttctttttgattgagaagttttgatattatctattttatgacattgtttctagtgctttgagtat 24056690  T
Q  180 gaaccaatttagataa 195  Q
    ||| |||||| |||||    
T  24056689 gaatcaatttggataa 24056674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 392 - 474
Target Start/End: Complemental strand, 48653048 - 48652966
Alignment:
Q  392 atgatgaaaagaaaatagtagtaattttcgaaaataagaatgaattaggagtaatgtcttggatcaaaatccgggacgttaca 474  Q
    ||||| ||||||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||| | || |||||||    
T  48653048 atgataaaaagaaaatagtagtaattttcaaaaatgagcatgaattaggagtaatgtcttggatcaaaattcagggcgttaca 48652966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 398 - 474
Target Start/End: Complemental strand, 21490690 - 21490614
Alignment:
Q  398 aaaagaaaatagtagtaattttcgaaaataagaatgaattaggagtaatgtcttggatcaaaatccgggacgttaca 474  Q
    |||| ||||| |||||||||||||||||| ||||||| ||||| ||||||||||||||||||||| ||| |||||||    
T  21490690 aaaaaaaaatggtagtaattttcgaaaatgagaatgatttaggcgtaatgtcttggatcaaaatctggggcgttaca 21490614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 392 - 467
Target Start/End: Original strand, 22078613 - 22078688
Alignment:
Q  392 atgatgaaaagaaaatagtagtaattttcgaaaataagaatgaattaggagtaatgtcttggatcaaaatccggga 467  Q
    ||||| ||||| ||||||| || |||||||||||| |||||| |||||| | ||||||||||||| ||||||||||    
T  22078613 atgataaaaaggaaatagtggtcattttcgaaaatgagaatggattaggcgcaatgtcttggatcgaaatccggga 22078688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 398 - 474
Target Start/End: Complemental strand, 12910944 - 12910867
Alignment:
Q  398 aaaagaaaatagtagtaattttcgaaaata-agaatgaattaggagtaatgtcttggatcaaaatccgggacgttaca 474  Q
    |||| ||||||||||| ||||||||||| | | ||||||||||| |||||||||||||  |||||||||| |||||||    
T  12910944 aaaaaaaaatagtagtgattttcgaaaaaagaaaatgaattaggcgtaatgtcttggactaaaatccggggcgttaca 12910867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 391 - 465
Target Start/End: Original strand, 3692276 - 3692351
Alignment:
Q  391 gatgatgaaaagaaaatagtagtaattttcgaaaata-agaatgaattaggagtaatgtcttggatcaaaatccgg 465  Q
    |||||| |||| || ||||||||  |||||||||| | | ||||| ||||| ||||||||||||||||||||||||    
T  3692276 gatgataaaaaaaacatagtagtgtttttcgaaaaaagaaaatgagttaggcgtaatgtcttggatcaaaatccgg 3692351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 416 - 466
Target Start/End: Original strand, 39184735 - 39184785
Alignment:
Q  416 ttttcgaaaataagaatgaattaggagtaatgtcttggatcaaaatccggg 466  Q
    |||| |||||| | ||||||||||| ||||||||||||||| |||||||||    
T  39184735 ttttagaaaatgataatgaattaggtgtaatgtcttggatcgaaatccggg 39184785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 430 - 474
Target Start/End: Complemental strand, 10287961 - 10287917
Alignment:
Q  430 aatgaattaggagtaatgtcttggatcaaaatccgggacgttaca 474  Q
    ||||| ||||| ||||||||||||| ||||||||||| |||||||    
T  10287961 aatgatttaggcgtaatgtcttggaccaaaatccggggcgttaca 10287917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 430 - 474
Target Start/End: Complemental strand, 15873147 - 15873103
Alignment:
Q  430 aatgaattaggagtaatgtcttggatcaaaatccgggacgttaca 474  Q
    ||||| ||||| ||||||||||||| ||||||||||| |||||||    
T  15873147 aatgatttaggcgtaatgtcttggaccaaaatccggggcgttaca 15873103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 422 - 474
Target Start/End: Complemental strand, 49169542 - 49169490
Alignment:
Q  422 aaaataagaatgaattaggagtaatgtcttggatcaaaatccgggacgttaca 474  Q
    ||||| ||||||| ||||| ||||||||||||| ||||||||| | |||||||    
T  49169542 aaaatgagaatgatttaggcgtaatgtcttggaccaaaatccgaggcgttaca 49169490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 203; Significance: 1e-110; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 19 - 290
Target Start/End: Complemental strand, 41958055 - 41957781
Alignment:
Q  19 gtatatttgtgattttataattgattaaacta----gtataatgcaaatgaaatatgtgtgaactttacttaaagaatatgacttgaatctattttctta 114  Q
    ||||||||||||||||||||||||||||||||     |||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||    
T  41958055 gtatatttgtgattttataattgattaaactattatatataatgcaaatgaaatatgtgtgaattttacttaaagaatatgacttgaatgtattttctta 41957956  T
Q  115 aatatttttgattgagaagttttgatactatctattttatgacattgttttggtgctttgagtatgaaccaatttagataaagaaattgacacttacact 214  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||| |||  |||||||||||||||||||||| ||||| ||||||||| ||||||||    
T  41957955 aatctttttgattgagaagttttgatactatctattttatgacattg-tttcttgctttgagtatgaaccaatttggataaggaaattgacccttacact 41957857  T
Q  215 aatattttaggtaccaaagaagagatggtctatgctttgaagtttttgcttgaagtgcgtacgggggacaaattgg 290  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| |||||||    
T  41957856 aatattttaggtaccaaagaagagatggtctatgctttgaagtttttgcttgtagtgcgtatgggggataaattgg 41957781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 128; E-Value: 7e-66
Query Start/End: Original strand, 35 - 290
Target Start/End: Complemental strand, 40841100 - 40840846
Alignment:
Q  35 ataattgattaaactagtataatgcaaatgaaatatgtgtgaacttta-cttaaagaatatgacttgaatcta-ttttcttaaatatttttgattgagaa 132  Q
    |||| ||||||||||| |||||| |||| ||||| ||||||||||||| |||||||||||||| |||||| || ||||||||| | |||||| |||||||    
T  40841100 ataagtgattaaactattataatacaaaggaaatgtgtgtgaactttaacttaaagaatatgaattgaatgtaattttcttaattctttttgtttgagaa 40841001  T
Q  133 gttttgatactatctattttatgacattgttt-tggtgctttgagtatgaaccaatttagataaagaaattgacacttacactaatattttaggtaccaa 231  Q
    |||||| |||||||||| |     |||||||| | ||||||||||||||||| ||||| ||||| ||||||||| |||||||||| |||||| |||||||    
T  40841000 gttttggtactatctatct-----cattgtttcttgtgctttgagtatgaactaatttggataaggaaattgacccttacactaacattttatgtaccaa 40840906  T
Q  232 agaagagatggtctatgctttgaagtttttgcttgaagtgcgtacg-ggggacaaattgg 290  Q
    ||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||    
T  40840905 agaagagatggtctatgctttaaagtttttgcttgaagtgcgtacggggggacaaattgg 40840846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 107 - 288
Target Start/End: Original strand, 6150220 - 6150402
Alignment:
Q  107 ttttcttaaatatttttgattgagaagttttgatactatctattttatgacattgttt-tggtgctttgagtatgaaccaatttagataaagaaattgac 205  Q
    ||||||||| | ||||||||||  ||||||||||| |||||||||||||||||||||| ||||| ||||||||||||||||||| ||||| |||||||||    
T  6150220 ttttcttaattctttttgattggtaagttttgatattatctattttatgacattgtttctggtgttttgagtatgaaccaatttggataaggaaattgac 6150319  T
Q  206 acttacactaatattttaggtaccaaagaagagatggtctatgctttgaagtttttgcttgaagtgcgtacgggggacaaatt 288  Q
     |||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  6150320 ccttacactaacattttagataccaaagaagagatggtctatgctttgaagtttttgcttgaagtgcgtacggaggacaaatt 6150402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 91 - 291
Target Start/End: Original strand, 44436786 - 44436987
Alignment:
Q  91 atatgacttgaatctattttcttaaata-tttttgattgagaagttttgatactatctattttatgacattgttt-tggtgctttgagtatgaaccaatt 188  Q
    ||||||||||||| |||||| || |||  ||||||||||| ||||||||||| ||||||||| |||||||||||| |||||||||||||||||| |||||    
T  44436786 atatgacttgaatgtattttttttaattctttttgattgataagttttgatattatctattt-atgacattgtttctggtgctttgagtatgaatcaatt 44436884  T
Q  189 tagataaagaaattgacacttacactaatattttaggtaccaaagaagagatggtctatgctttgaagtttttgcttgaagtgcgtacgggggacaaatt 288  Q
    | ||||| ||||| ||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  44436885 tggataaggaaatcgacccttacactaacattttaggtaccaaagaagagatggtctatgctttgaagtttttgcttgaagtgcgtatgggggacaaatt 44436984  T
Q  289 ggg 291  Q
    |||    
T  44436985 ggg 44436987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 135 - 291
Target Start/End: Complemental strand, 22815811 - 22815653
Alignment:
Q  135 tttgatactatctattttatgacattgttt-tggtgctttgagtatgaaccaatttagataaagaaattgacacttacactaatattttaggtaccaaag 233  Q
    ||||||| |||||||||||||| || |||| ||||||||||||||||||||||||| ||||| ||||||||| |||||| ||| |||||||||||||| |    
T  22815811 tttgatattatctattttatgatatagtttctggtgctttgagtatgaaccaatttggataatgaaattgacccttacattaacattttaggtaccaatg 22815712  T
Q  234 aagagatggtctatgctttgaagtttttgcttgaagtgcgtacgggggac-aaattggg 291  Q
    ||||||| ||||||| |||||||||||||||||||||||||||||||||| ||||||||    
T  22815711 aagagatagtctatgatttgaagtttttgcttgaagtgcgtacgggggacgaaattggg 22815653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 119 - 211
Target Start/End: Original strand, 35840863 - 35840955
Alignment:
Q  119 tttttgattgagaagttttgatactatctattttatgacattgttttggtgctttgagtatgaaccaatttagataaagaaattgacacttac 211  Q
    ||||| |||||||||||||||||||||||||||| || ||||||| | ||||||||||||||||||||||| ||||| ||||||||| |||||    
T  35840863 tttttaattgagaagttttgatactatctattttgtggcattgttcttgtgctttgagtatgaaccaatttggataaggaaattgacccttac 35840955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 391 - 463
Target Start/End: Complemental strand, 41957680 - 41957608
Alignment:
Q  391 gatgatgaaaagaaaatagtagtaattttcgaaaataagaatgaattaggagtaatgtcttggatcaaaatcc 463  Q
    |||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| ||||||||||    
T  41957680 gatgatgaaaagaaaatagtagtaattttcgaaaatgaaaatgaattaggagtaatgtcttgaatcaaaatcc 41957608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 119 - 212
Target Start/End: Complemental strand, 12659432 - 12659338
Alignment:
Q  119 tttttgattgagaagttttgatactatctattttatgacattgttt-tggtgctttgagtatgaaccaatttagataaagaaattgacacttaca 212  Q
    |||||||| |||||| ||| |||||||||||||||   |||||||| | ||||||||||||||||||||||| ||||| ||||||||| ||||||    
T  12659432 tttttgatcgagaagattttatactatctattttagagcattgtttcttgtgctttgagtatgaaccaatttggataaggaaattgacccttaca 12659338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 393 - 474
Target Start/End: Original strand, 26162549 - 26162631
Alignment:
Q  393 tgatgaaaagaaaatagtagtaattttcgaaaata-agaatgaattaggagtaatgtcttggatcaaaatccgggacgttaca 474  Q
    |||| |||||||||||||||||||||||||||| | ||||||| ||||| ||||||||||| |||||||||| || |||||||    
T  26162549 tgataaaaagaaaatagtagtaattttcgaaaaaagagaatgatttaggcgtaatgtcttgaatcaaaatccagggcgttaca 26162631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 119 - 219
Target Start/End: Original strand, 10250952 - 10251053
Alignment:
Q  119 tttttgattgagaagttttgatactatctattttatgacattgttt-tggtgctttgagtatgaaccaatttagataaagaaattgacacttacactaat 217  Q
    ||||| || |||||| ||| || ||||||||||||   |||||||| | ||||||| ||||||||||||||| ||||| ||||||||| |||||| ||||    
T  10250952 ttttttatcgagaagatttcatgctatctattttagagcattgtttcttgtgcttttagtatgaaccaatttggataaggaaattgactcttacattaat 10251051  T
Q  218 at 219  Q
    ||    
T  10251052 at 10251053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 398 - 474
Target Start/End: Original strand, 6161737 - 6161814
Alignment:
Q  398 aaaagaaaatagtagtaattttcgaaaa-taagaatgaattaggagtaatgtcttggatcaaaatccgggacgttaca 474  Q
    |||| ||||||||||| |||||| |||| ||||||| | ||||| ||||||||||||| |||||| |||| |||||||    
T  6161737 aaaaaaaaatagtagtgattttctaaaaataagaataatttaggcgtaatgtcttggaccaaaattcggggcgttaca 6161814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 175 - 219
Target Start/End: Original strand, 28213575 - 28213619
Alignment:
Q  175 agtatgaaccaatttagataaagaaattgacacttacactaatat 219  Q
    |||||||||||||||||||||||||| |||| |||||| ||||||    
T  28213575 agtatgaaccaatttagataaagaaaatgactcttacattaatat 28213619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 430 - 474
Target Start/End: Complemental strand, 40840693 - 40840649
Alignment:
Q  430 aatgaattaggagtaatgtcttggatcaaaatccgggacgttaca 474  Q
    ||||||||||| ||||||| ||||| ||||||||||| |||||||    
T  40840693 aatgaattaggtgtaatgttttggaccaaaatccggggcgttaca 40840649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 186; Significance: 1e-100; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 35 - 291
Target Start/End: Complemental strand, 18472520 - 18472263
Alignment:
Q  35 ataattgattaaactagtataatgcaaatgaaatatgtgtgaactttacttaaaga-atatgacttgaatctattttcttaaatatttttgattgagaag 133  Q
    |||| ||||||||||| ||||| ||||| ||||| ||| ||||||||||||||| | ||||||||||||| |||||||| |||| |||||||||||||||    
T  18472520 ataagtgattaaactattataaagcaaaagaaatgtgtatgaactttacttaaaaacatatgacttgaatgtattttctaaaatctttttgattgagaag 18472421  T
Q  134 ttttgatactatctattttatgacattgttttggtgctttgagtatgaaccaatttagataaagaaattgacacttacactaatattttaggtaccaaag 233  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||  |||||||| |||||||||||||||||| ||||||||    
T  18472420 ttttgatactatctattttatgacattgttttggtgctttgagtatgaaccaatttggataagaaaattgacccttacactaatattttagataccaaag 18472321  T
Q  234 aagagatggtctatgctttgaagtttttgcttgaagtgcgtacgggggacaaattggg 291  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  18472320 aagagatggtctatgctttgaagtttttgcttgaagtgtgtacgggggacaaattggg 18472263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 35 - 283
Target Start/End: Complemental strand, 35761609 - 35761359
Alignment:
Q  35 ataattgattaaactagtataatgcaaatgaaatatgtgtgaactttacttaaa-gaatatgacttgaatctattttcttaaatatttttgattgagaag 133  Q
    |||| ||||||||||| ||||||||||| ||||| ||| |||||| |||||||| | ||||||||||||| |||||| |||||| ||||||||| |||||    
T  35761609 ataagtgattaaactattataatgcaaaagaaatgtgtatgaactctacttaaaagcatatgacttgaatgtatttttttaaatctttttgattcagaag 35761510  T
Q  134 ttttgatactatctattttatgacattgttt-tggtgctttgagtatgaaccaatttagataaagaaattgacacttacactaatattttaggtaccaaa 232  Q
    ||||||||  |||||||||||| ||| |||| | ||||||||||||||||||||||| ||||| ||||||||| |||||||||| |||||||||||||||    
T  35761509 ttttgatatcatctattttatggcatggtttcttgtgctttgagtatgaaccaatttggataaggaaattgacccttacactaacattttaggtaccaaa 35761410  T
Q  233 gaagagatggtctatgctttgaagtttttgcttgaagtgcgtacgggggac 283  Q
    ||||| || ||||||||||||||||||||||||||||||||||||||||||    
T  35761409 gaagatattgtctatgctttgaagtttttgcttgaagtgcgtacgggggac 35761359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 119 - 291
Target Start/End: Complemental strand, 43406860 - 43406687
Alignment:
Q  119 tttttgattgagaagttttgatactatctattttatgacattgttttggtgctttgagtatgaaccaatttagataaagaaattgacacttacactaata 218  Q
    |||||||||||||||||||||||||||||||||| || ||||||| | ||||||||||||||||||||||| ||||| ||||||||| ||| |||||| |    
T  43406860 tttttgattgagaagttttgatactatctattttgtggcattgttcttgtgctttgagtatgaaccaatttggataaggaaattgacccttgcactaaca 43406761  T
Q  219 ttttaggtaccaaagaagagatggtctatgctttgaagtttttgcttgaagtgcgtacgggggac-aaattggg 291  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| ||||||||    
T  43406760 ttttaggtaccaaagaagagatgatctatgctttgaagtttttgcttgaagtgcgtacaggggacgaaattggg 43406687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 106 - 268
Target Start/End: Original strand, 8422256 - 8422419
Alignment:
Q  106 attttcttaaatatttttgattgagaagttttgatactatctattttatgacattgttt-tggtgctttgagtatgaaccaatttagataaagaaattga 204  Q
    |||||||||| | ||||||||||| ||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||| ||||| ||||||||    
T  8422256 attttcttaattctttttgattgataagttttgatattatctattttatgacattgtttctggtgctttgagtatgaaccaatttggataaggaaattga 8422355  T
Q  205 cacttacactaatattttaggtaccaaagaagagatggtctatgctttgaagtttttgcttgaa 268  Q
    | |||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  8422356 cccttacactaacattttaggtaccaaagaagagatggtctatgctttgaagtttttacttgaa 8422419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 119 - 291
Target Start/End: Original strand, 338821 - 338994
Alignment:
Q  119 tttttgattgagaagttttgatactatctattttatgacattgttttggtgctttgagtatgaaccaatttagataaagaaattgacacttacactaata 218  Q
    |||||||||||||||||||||||||||||||||| || ||||||| | ||||||||||||||||||||||| ||||| ||||||||| ||| |||||| |    
T  338821 tttttgattgagaagttttgatactatctattttgtggcattgttcttgtgctttgagtatgaaccaatttggataaggaaattgacccttgcactaaca 338920  T
Q  219 ttttaggtaccaaagaagagatggtctatgctttgaagtttttgcttgaagtgcgtacgggggac-aaattggg 291  Q
    ||||||||||||||||||||||| ||||| |||||||||||||||||||||||| |||||||||| ||||||||    
T  338921 ttttaggtaccaaagaagagatgatctatactttgaagtttttgcttgaagtgcttacgggggacgaaattggg 338994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 120 - 291
Target Start/End: Complemental strand, 37666671 - 37666500
Alignment:
Q  120 ttttgattgagaagttttgatactatctattttatgacattgttttggtgctttgagtatgaaccaatttagataaagaaattgacacttacactaatat 219  Q
    ||||||||||||||||||||||||||||||||| || ||||||| | ||||||||||||||||||||||| ||||| ||||||||| |||||||||| ||    
T  37666671 ttttgattgagaagttttgatactatctattttgtggcattgttcttgtgctttgagtatgaaccaatttggataaggaaattgacccttacactaacat 37666572  T
Q  220 tttaggtaccaaagaagagatggtctatgctttgaagtttttgcttgaagtgcgtacgggggac-aaattggg 291  Q
    |||||||||||||||||||||| ||||||||||| || |||||||||||||||||||||||||| ||||||||    
T  37666571 tttaggtaccaaagaagagatgatctatgctttgtag-ttttgcttgaagtgcgtacgggggacgaaattggg 37666500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 119 - 291
Target Start/End: Original strand, 6836608 - 6836782
Alignment:
Q  119 tttttgattgagaagttttgatactatctattttatgacattgttttggtgctttgagtatgaaccaatttagataaagaaattgacacttacactaata 218  Q
    |||||||||||||||||||||||||||||||||| || ||||||| | ||||||| ||||||||||||||| ||||| ||||||||| |||||||||| |    
T  6836608 tttttgattgagaagttttgatactatctattttgtggcattgttcttgtgctttaagtatgaaccaatttggataaggaaattgacccttacactaaca 6836707  T
Q  219 ttttaggtaccaaagaagagatggtctatgctttgaagtttttgcttgaagtgcgtacggggg--acaaattggg 291  Q
    ||||||||||||||||||  ||||| |||||||||  || |||||||||||||||||||||||  ||||||||||    
T  6836708 ttttaggtaccaaagaaggaatggtgtatgctttggtgtgtttgcttgaagtgcgtacggggggaacaaattggg 6836782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 19 - 229
Target Start/End: Original strand, 16075314 - 16075527
Alignment:
Q  19 gtatatttgtgattttataattgattaaactagtataatgcaaatgaaatatgtgtgaactttacttaaagaatatgacttgaatcta-ttttcttaaat 117  Q
    ||||||||||||||||||||||||||||| || |||||||||||||||||  ||||||||||||||||||||||||||||||| | || ||||||||| |    
T  16075314 gtatatttgtgattttataattgattaaaatattataatgcaaatgaaatgggtgtgaactttacttaaagaatatgacttgagtgtatttttcttaatt 16075413  T
Q  118 atttttgattgagaagttttgatactatctattttatgacattgttt-tggtgctttgagtatgaaccaatttagataaagaaattga-cacttacacta 215  Q
     ||||| ||| |||||||||||||  ||||||||||| ||||||||| |  ||||||||||||||||||| || ||||| |||||||| |  |||||| |    
T  16075414 cttttttattaagaagttttgatatcatctattttataacattgtttcttctgctttgagtatgaaccaacttggataaggaaattgagcctttacacca 16075513  T
Q  216 atattttaggtacc 229  Q
    | ||||||||||||    
T  16075514 acattttaggtacc 16075527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 19 - 219
Target Start/End: Complemental strand, 33007245 - 33007044
Alignment:
Q  19 gtatatttgtgattttataattgattaaactagtataatgcaaatgaaatatgtgtgaactttacttaaagaatatgacttgaatcta-ttttcttaaat 117  Q
    |||||||||||  || |||| ||||||||||| |||||| |||   |||| |||||||| ||| ||||||| ||||||||| ||| || ||||||||  |    
T  33007245 gtatatttgtgtgttgataagtgattaaactattataatacaaggaaaatgtgtgtgaatttt-cttaaaggatatgacttaaatgtacttttcttattt 33007147  T
Q  118 atttttgattgagaagttttgatactatctattttatgacattgttt-tggtgctttgagtatgaaccaatttagataaagaaattgacacttacactaa 216  Q
     ||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| |||||| ||||| ||||||||| |||||| |||    
T  33007146 ctttttgattgagaagttttgatattatctattttatgacattgtttctggtgctttgagtatgaatcaatttggataaggaaattgacccttacattaa 33007047  T
Q  217 tat 219  Q
    |||    
T  33007046 tat 33007044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 19 - 219
Target Start/End: Complemental strand, 19198388 - 19198193
Alignment:
Q  19 gtatatttgtgattttataattgattaaactagtataatgcaaatgaaatatgtgtgaactttacttaaagaatatgacttgaatctatttt-cttaaat 117  Q
    ||||||||||||||||| |||||||||||  | |||||||||||||||||   ||||||||||||         ||||||| ||| |||||| ||||| |    
T  19198388 gtatatttgtgattttagaattgattaaaacattataatgcaaatgaaatgcatgtgaactttac---------atgacttaaatgtatttttcttaatt 19198298  T
Q  118 atttttgattgagaagttttgatactatctattttatgacattgttt---tggtgctttgagtatgaaccaatttagataaagaaattgacacttacact 214  Q
     ||||| ||||||||||||||||||||||||||||||||||||||||   | ||||||||||||||||||||||| ||||| ||||||||| ||| || |    
T  19198297 ctttttaattgagaagttttgatactatctattttatgacattgtttatcttgtgctttgagtatgaaccaatttggataaggaaattgacccttgcatt 19198198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 57 - 188
Target Start/End: Complemental strand, 9536903 - 9536769
Alignment:
Q  57 tgcaaatgaaatatgtgtgaactttac-ttaaagaatatgacttgaatctatttt-cttaaatatttttgattgagaagttttgatactatctattttat 154  Q
    ||||||| | || ||||||||| |||| || ||| ||||||||||||| |||||| ||||| | ||||||||||| ||||||||||| ||||||||||||    
T  9536903 tgcaaataagatgtgtgtgaaccttaccttgaagcatatgacttgaatgtatttttcttaattctttttgattgataagttttgatattatctattttat 9536804  T
Q  155 gacattgttt-tggtgctttgagtatgaaccaatt 188  Q
    |||||||||| | ||||||||||||||||||||||    
T  9536803 gacattgtttctagtgctttgagtatgaaccaatt 9536769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 120 - 219
Target Start/End: Original strand, 24276100 - 24276199
Alignment:
Q  120 ttttgattgagaagttttgatactatctattttatgacattgttttggtgctttgagtatgaaccaatttagataaagaaattgacacttacactaatat 219  Q
    ||||||| ||||||||||||| ||||||| ||| || ||||||| | || |||||||||||||||||||| ||||||||||||||| |||||| ||||||    
T  24276100 ttttgatcgagaagttttgatgctatctactttgtggcattgttcttgtactttgagtatgaaccaatttggataaagaaattgacccttacattaatat 24276199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 117 - 218
Target Start/End: Original strand, 33009102 - 33009204
Alignment:
Q  117 tatttttgattgagaagttttgatactatctattttatgacattgttt-tggtgctttgagtatgaaccaatttagataaagaaattgacacttacacta 215  Q
    |||||||||| ||| ||||| ||||||||||| ||||||||||||||| | |||||||||| |||||||||||| |||||  |||||||| |||||| ||    
T  33009102 tatttttgatcgagtagtttcgatactatctactttatgacattgtttcttgtgctttgagcatgaaccaatttggataagaaaattgacccttacatta 33009201  T
Q  216 ata 218  Q
    |||    
T  33009202 ata 33009204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 120 - 219
Target Start/End: Complemental strand, 24055759 - 24055660
Alignment:
Q  120 ttttgattgagaagttttgatactatctattttatgacattgttttggtgctttgagtatgaaccaatttagataaagaaattgacacttacactaatat 219  Q
    ||||||| |||||||||||||  |||||| ||| || ||||||| | ||||||||||||| ||||||||| ||||| ||||||||| | |||| ||||||    
T  24055759 ttttgatcgagaagttttgatgttatctactttgtggcattgttcttgtgctttgagtatcaaccaatttggataaggaaattgacccctacattaatat 24055660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 392 - 460
Target Start/End: Complemental strand, 18472162 - 18472094
Alignment:
Q  392 atgatgaaaagaaaatagtagtaattttcgaaaataagaatgaattaggagtaatgtcttggatcaaaa 460  Q
    ||||| ||||||||||||||||||||||  ||||| |||||||||||||  |||||||||| |||||||    
T  18472162 atgataaaaagaaaatagtagtaattttaaaaaatgagaatgaattaggcataatgtcttgtatcaaaa 18472094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 119 - 219
Target Start/End: Original strand, 16111079 - 16111184
Alignment:
Q  119 tttttgattgagaagttttgatactatctattttatgacattgttt-----tggtgctttgagtatgaaccaatttagataaagaaattgacacttacac 213  Q
    |||||||| || ||||||| ||||| ||||||||| ||||||||||     | || |||||||||||||||||||| |||||  |||||||| ||||||     
T  16111079 tttttgatcgaaaagtttttatactgtctattttaagacattgtttatttcttgtcctttgagtatgaaccaatttggataagaaaattgacccttacat 16111178  T
Q  214 taatat 219  Q
    ||||||    
T  16111179 taatat 16111184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 404 - 474
Target Start/End: Complemental strand, 37666386 - 37666316
Alignment:
Q  404 aaatagtagtaattttcgaaaataagaatgaattaggagtaatgtcttggatcaaaatccgggacgttaca 474  Q
    ||||||||||  |||  ||||| || ||||| ||||| ||||||||||||||||||||||||| |||||||    
T  37666386 aaatagtagtgttttcagaaaagaaaaatgatttaggcgtaatgtcttggatcaaaatccggggcgttaca 37666316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 391 - 476
Target Start/End: Original strand, 6836881 - 6836968
Alignment:
Q  391 gatgatgaaaagaaaatagtagtaattttc-gaaaataagaatgaattaggagtaatgtcttggatc-aaaatccgggacgttacatt 476  Q
    |||||| ||||||||||||||||  ||||| |||||  | ||||| ||||| ||||||||||||||| ||||| |||| |||||||||    
T  6836881 gatgataaaaagaaaatagtagtttttttcagaaaaagaaaatgatttaggcgtaatgtcttggatcaaaaatacggggcgttacatt 6836968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 436 - 475
Target Start/End: Complemental strand, 51442543 - 51442504
Alignment:
Q  436 ttaggagtaatgtcttggatcaaaatccgggacgttacat 475  Q
    ||||| ||||||||||||||||||||||||| ||||||||    
T  51442543 ttaggcgtaatgtcttggatcaaaatccggggcgttacat 51442504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 414 - 474
Target Start/End: Original strand, 15973867 - 15973929
Alignment:
Q  414 aattttcgaaaa-taagaatgaattaggagtaatgtcttggat-caaaatccgggacgttaca 474  Q
    |||||||||||| | ||||||||||||| ||||||||||||||  |||||||||| |||||||    
T  15973867 aattttcgaaaaatgagaatgaattaggcgtaatgtcttggataaaaaatccggggcgttaca 15973929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 430 - 472
Target Start/End: Complemental strand, 19197994 - 19197952
Alignment:
Q  430 aatgaattaggagtaatgtcttggatcaaaatccgggacgtta 472  Q
    ||||| ||||| ||||||||||||| |||||||||||||||||    
T  19197994 aatgatttaggtgtaatgtcttggaccaaaatccgggacgtta 19197952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 430 - 475
Target Start/End: Original strand, 339142 - 339187
Alignment:
Q  430 aatgaattaggagtaatgtcttggatcaaaatccgggacgttacat 475  Q
    ||||| ||||| ||||||||||||| ||||||||||| ||||||||    
T  339142 aatgatttaggcgtaatgtcttggaccaaaatccggggcgttacat 339187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 430 - 474
Target Start/End: Complemental strand, 43406538 - 43406494
Alignment:
Q  430 aatgaattaggagtaatgtcttggatcaaaatccgggacgttaca 474  Q
    ||||| ||||| ||||||||||||| ||||||||||| |||||||    
T  43406538 aatgatttaggcgtaatgtcttggaccaaaatccggggcgttaca 43406494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 179; Significance: 3e-96; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 179; E-Value: 3e-96
Query Start/End: Original strand, 35 - 291
Target Start/End: Complemental strand, 13772988 - 13772730
Alignment:
Q  35 ataattgattaaactagtataatgcaaatgaaatatgtgtgaactttacttaaaga-atatgacttgaatctattttcttaaatatttttgattgagaag 133  Q
    |||| ||||||||||| ||||||||||| ||||| ||| ||||||||||||||| | |||||||||| || ||||||||||||| |||||||||||||||    
T  13772988 ataagtgattaaactattataatgcaaaagaaatgtgtatgaactttacttaaaaacatatgacttgtatgtattttcttaaatctttttgattgagaag 13772889  T
Q  134 ttttgatactatctattttatgacattgttt-tggtgctttgagtatgaaccaatttagataaagaaattgacacttacactaatattttaggtaccaaa 232  Q
    |||||||| ||||||| |||||||||||||| | ||||||||||||||||||||||| ||||| ||||||||| ||||||||||||||||||||||||||    
T  13772888 ttttgatattatctatattatgacattgtttcttgtgctttgagtatgaaccaatttggataaggaaattgactcttacactaatattttaggtaccaaa 13772789  T
Q  233 gaagagatggtctatgctttgaagtttttgcttgaagtgcgtacgggggacaaattggg 291  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  13772788 gaagagatggtctatgctttgaagtttttgctagaagtgcgtacgggggacaaattggg 13772730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 135; E-Value: 5e-70
Query Start/End: Original strand, 70 - 286
Target Start/End: Complemental strand, 26182237 - 26182019
Alignment:
Q  70 tgtgtgaactttactta-aagaatatgacttgaatcta-ttttcttaaatatttttgattgagaagttttgatactatctattttatgacattgttttgg 167  Q
    ||||||||| ||||||  ||| || |||||||||| || ||||||||| | ||||||||||| ||||||||||| ||||||||| |||||||||||  ||    
T  26182237 tgtgtgaaccttactttgaagcatgtgacttgaatgtaattttcttaattctttttgattgataagttttgatattatctatttcatgacattgttccgg 26182138  T
Q  168 tgctttgagtatgaaccaatttagataaagaaattgacacttacactaatattttaggtaccaaagaagagatggtctatgctttgaagtttttgcttga 267  Q
    |||||||||||||||||||||| ||||| ||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26182137 tgctttgagtatgaaccaattttgataaggaaattgacccttacactaacattttaggtaccaaagaagagatggtctatgctttgaagtttttgcttga 26182038  T
Q  268 agtgcgtacgggggacaaa 286  Q
    ||||||||||||| |||||    
T  26182037 agtgcgtacggggaacaaa 26182019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 119 - 291
Target Start/End: Complemental strand, 10751122 - 10750949
Alignment:
Q  119 tttttgattgagaagttttgatactatctattttatgacattgttttggtgctttgagtatgaaccaatttagataaagaaattgacacttacactaata 218  Q
    ||||| |||||||||||||||||||||||||| | || ||||||| | ||||||||||||||||||||||| ||||| ||||||||| |||||||||| |    
T  10751122 ttttttattgagaagttttgatactatctattatgtggcattgttcttgtgctttgagtatgaaccaatttggataaggaaattgacccttacactaaca 10751023  T
Q  219 ttttaggtaccaaagaagagatggtctatgctttgaagtttttgcttgaagtgcgtacgggggac-aaattggg 291  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  10751022 ttttaggtaccaaagaagagatgatctatgctttgaagtttttgcttgaagtgcgtacgggggacgaaattggg 10750949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 119 - 291
Target Start/End: Complemental strand, 32449759 - 32449586
Alignment:
Q  119 tttttgattgagaagttttgatactatctattttatgacattgttttggtgctttgagtatgaaccaatttagataaagaaattgacacttacactaata 218  Q
    |||||||||||||||||||||||||||||||||| || ||||||| | ||||||||||||||||||||||| ||||| ||||||||| |||||||||| |    
T  32449759 tttttgattgagaagttttgatactatctattttgtggcattgttcttgtgctttgagtatgaaccaatttggataaggaaattgacccttacactaaca 32449660  T
Q  219 ttttaggtaccaaagaagagatggtctatgctttgaagtttttgcttgaagtgcgtacgggggac-aaattggg 291  Q
    ||||||||||||||||||||||| ||||||| |||||||| |||||||||||||||||||||||| ||||||||    
T  32449659 ttttaggtaccaaagaagagatgatctatgcattgaagttcttgcttgaagtgcgtacgggggacgaaattggg 32449586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 119 - 283
Target Start/End: Original strand, 34636900 - 34637064
Alignment:
Q  119 tttttgattgagaagttttgatactatctattttatgacattgttttggtgctttgagtatgaaccaatttagataaagaaattgacacttacactaata 218  Q
    |||||||||||||||||||||||||||||||||| || ||||||| | |||||||| |||||||||||||| ||||| ||||||||| |||||||||| |    
T  34636900 tttttgattgagaagttttgatactatctattttgtggcattgttcttgtgctttgggtatgaaccaatttggataaggaaattgacccttacactaaca 34636999  T
Q  219 ttttaggtaccaaagaagagatggtctatgctttgaagtttttgcttgaagtgcgtacgggggac 283  Q
    ||||||||||||||||||||||| |||||||||||||||||||||| ||||||  ||||||||||    
T  34637000 ttttaggtaccaaagaagagatgatctatgctttgaagtttttgctggaagtgtatacgggggac 34637064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 35 - 251
Target Start/End: Original strand, 24164418 - 24164637
Alignment:
Q  35 ataattgattaaactagtataatgcaaatgaaatatgtgtgaactttac-ttaaagaatatgacttgaatctatttt-cttaaatatttttgattgagaa 132  Q
    |||||||||||||||| ||||||||||| ||||| ||||| |||||||| || ||| ||||||||| ||| |||||| ||||  | || |||||||||||    
T  24164418 ataattgattaaactattataatgcaaaagaaatgtgtgtaaactttaccttgaagcatatgactttaatgtatttttcttattttttcttgattgagaa 24164517  T
Q  133 gttttgatactatctattttatgacattgttttggtgctttgagtatgaaccaatttagataaagaaattga-cacttacactaatattttaggtaccaa 231  Q
    ||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| ||||| |||||||| | ||||||| || ||||||||||||||    
T  24164518 gttttgatactatctattttatgacattgttcttgtgctttgagtatgaaccaatttggataaggaaattgaccccttacaccaacattttaggtaccaa 24164617  T
Q  232 agaagagatggtctatgctt 251  Q
    | |||| || || |||||||    
T  24164618 ataagacatagtgtatgctt 24164637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 119 - 237
Target Start/End: Complemental strand, 23260144 - 23260026
Alignment:
Q  119 tttttgattgagaagttttgatactatctattttatgacattgttttggtgctttgagtatgaaccaatttagataaagaaattgacacttacactaata 218  Q
    ||||| |||||||||||||||||||||||||||| || ||||||| | ||||||||||||||||||||||| ||||| ||||||||| |||||||||| |    
T  23260144 ttttttattgagaagttttgatactatctattttgtggcattgttcttgtgctttgagtatgaaccaatttggataaggaaattgacccttacactaaca 23260045  T
Q  219 ttttaggtaccaaagaaga 237  Q
    |||||||||||||||||||    
T  23260044 ttttaggtaccaaagaaga 23260026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 105 - 253
Target Start/End: Original strand, 20559494 - 20559641
Alignment:
Q  105 tattttcttaaatatttttgattgagaagttttgatactatctattttatgacattgttttggtgctttgagtatgaaccaatttagataaagaaattga 204  Q
    ||||||||||  | |||||||||||||||||||| || ||||||||| ||| ||||||| | ||||||||||||||||||||||| ||||||||||||||    
T  20559494 tattttcttatttctttttgattgagaagttttggtagtatctattt-atggcattgttcttgtgctttgagtatgaaccaatttggataaagaaattga 20559592  T
Q  205 cacttacactaatattttaggtaccaaagaagagatggtctatgctttg 253  Q
    | |||||| ||| |||||||||| ||||||||| ||||| |||||||||    
T  20559593 cccttacagtaacattttaggtatcaaagaagacatggtgtatgctttg 20559641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 218 - 282
Target Start/End: Complemental strand, 23260025 - 23259961
Alignment:
Q  218 attttaggtaccaaagaagagatggtctatgctttgaagtttttgcttgaagtgcgtacggggga 282  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  23260025 attttaggtaccaaagaagagatgatctatgctttgaagtttttgcttgaagtgcgtacggggga 23259961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 391 - 474
Target Start/End: Complemental strand, 13772629 - 13772546
Alignment:
Q  391 gatgatgaaaagaaaatagtagtaattttcgaaaataagaatgaattaggagtaatgtcttggatcaaaatccgggacgttaca 474  Q
    |||||| |||||||||||||||||||||| |||||| || |||||||||||||||||||||||||||||||| ||| |||||||    
T  13772629 gatgataaaaagaaaatagtagtaatttttgaaaatgagcatgaattaggagtaatgtcttggatcaaaatctggggcgttaca 13772546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 391 - 474
Target Start/End: Complemental strand, 10750838 - 10750755
Alignment:
Q  391 gatgatgaaaagaaaatagtagtaattttcgaaaataagaatgaattaggagtaatgtcttggatcaaaatccgggacgttaca 474  Q
    |||||| ||||||||||||||||||||||||||||| || ||||||| ||||||||||||||||| |||||  ||| |||||||    
T  10750838 gatgataaaaagaaaatagtagtaattttcgaaaatgagcatgaatttggagtaatgtcttggattaaaatttggggcgttaca 10750755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 119 - 202
Target Start/End: Complemental strand, 31276027 - 31275943
Alignment:
Q  119 tttttgattgagaagttttgatactatctattttatgacattgttt-tggtgctttgagtatgaaccaatttagataaagaaatt 202  Q
    |||||||| |||||||||||||| |||||||||||||||||| ||| | ||| ||| ||||||||||||||| ||||| ||||||    
T  31276027 tttttgatcgagaagttttgatattatctattttatgacattatttctcgtgttttaagtatgaaccaatttggataaggaaatt 31275943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 119 - 219
Target Start/End: Complemental strand, 11166146 - 11166045
Alignment:
Q  119 tttttgattgagaagttttgatactatctattttatgacattgttt-tggtgctttgagtatgaaccaatttagataaagaaattgacacttacactaat 217  Q
    |||||||| |||||| ||| |||||||||||||||   |||||||| | ||||||| ||||||||||||||| ||||  ||||||||| |||||| ||||    
T  11166146 tttttgatcgagaagattttatactatctattttagagcattgtttattgtgctttcagtatgaaccaatttggatacggaaattgacccttacattaat 11166047  T
Q  218 at 219  Q
    ||    
T  11166046 at 11166045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 404 - 477
Target Start/End: Complemental strand, 19814812 - 19814738
Alignment:
Q  404 aaatagtagtaattttc-gaaaataagaatgaattaggagtaatgtcttggatcaaaatccgggacgttacatta 477  Q
    ||||||||||| ||||| |||||  | ||||| ||||| ||||||||||||| ||||||||||| ||||||||||    
T  19814812 aaatagtagtatttttcagaaaaggaaaatgatttaggcgtaatgtcttggaccaaaatccggggcgttacatta 19814738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 430 - 475
Target Start/End: Original strand, 24164818 - 24164863
Alignment:
Q  430 aatgaattaggagtaatgtcttggatcaaaatccgggacgttacat 475  Q
    |||||||||||  |||||||||||||||||||||||| ||||||||    
T  24164818 aatgaattaggcataatgtcttggatcaaaatccggggcgttacat 24164863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 119 - 156
Target Start/End: Original strand, 31276859 - 31276896
Alignment:
Q  119 tttttgattgagaagttttgatactatctattttatga 156  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  31276859 ttttttattgagaagttttgatactatctattttatga 31276896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 430 - 474
Target Start/End: Complemental strand, 32449437 - 32449393
Alignment:
Q  430 aatgaattaggagtaatgtcttggatcaaaatccgggacgttaca 474  Q
    ||||| ||||| ||||||||||||||||||||||||| |||||||    
T  32449437 aatgatttaggcgtaatgtcttggatcaaaatccggggcgttaca 32449393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 404 - 474
Target Start/End: Complemental strand, 23259828 - 23259757
Alignment:
Q  404 aaatagtagtaattttc-gaaaataagaatgaattaggagtaatgtcttggatcaaaatccgggacgttaca 474  Q
    ||||||||||  ||||| ||||| || ||||| ||||| |||||||||| |||||||||||||| |||||||    
T  23259828 aaatagtagtgtttttcagaaaagaaaaatgatttaggcgtaatgtcttagatcaaaatccggggcgttaca 23259757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1838 (Bit Score: 167; Significance: 4e-89; HSPs: 1)
Name: scaffold1838
Description:

Target: scaffold1838; HSP #1
Raw Score: 167; E-Value: 4e-89
Query Start/End: Original strand, 19 - 291
Target Start/End: Original strand, 800 - 1072
Alignment:
Q  19 gtatatttgtgattttataattgattaaactagtataatgcaaatgaaatatgtgtgaactttacttaaagaatatgacttgaatctatttt-cttaaat 117  Q
    ||||||||| ||||||||||||||||||| || ||||||||||||||||| ||||||||||||||||||| |||||||||||||| |||||| ||||  |    
T  800 gtatatttgcgattttataattgattaaaatattataatgcaaatgaaatgtgtgtgaactttacttaaa-aatatgacttgaatgtatttttcttattt 898  T
Q  118 atttttgattgagaagttttgatactatctattttatgacattgttt-tggtgctttgagtatgaaccaatttagataaagaaattgacacttacactaa 216  Q
     ||||||||||| ||||||||||| | |||| ||||||||||||||| ||||||||||| ||||||||||||| ||||| ||||||||| ||||||||||    
T  899 ctttttgattgataagttttgatattttctactttatgacattgtttatggtgctttga-tatgaaccaatttggataaggaaattgacccttacactaa 997  T
Q  217 tattttaggtaccaaagaagagatggtctatgctttgaagtttttgcttgaagtgcgtacgggggacaaattggg 291  Q
    ||||||| |||||||||||||||||||| |||||||||||||||| ||||||||| |||||||||||||||||||    
T  998 tattttaagtaccaaagaagagatggtccatgctttgaagttttttcttgaagtgtgtacgggggacaaattggg 1072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 138; Significance: 7e-72; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 138; E-Value: 7e-72
Query Start/End: Original strand, 95 - 291
Target Start/End: Complemental strand, 46404117 - 46403920
Alignment:
Q  95 gacttgaatctattttcttaaatatttttgattgagaagttttgatactatctattttatgacattgttttggtgctttgagtatgaaccaatttagata 194  Q
    ||||| ||| ||||||||||  | ||||||||||||||||||||||||||||||||||||| ||||||| | ||||||||||||||||||||||| ||||    
T  46404117 gacttaaatgtattttcttatttctttttgattgagaagttttgatactatctattttatggcattgttcttgtgctttgagtatgaaccaatttggata 46404018  T
Q  195 aagaaattgacacttacactaatattttaggtaccaaagaagagatggtctatgctttgaagtttttgcttgaagtgcgtacgggggac-aaattggg 291  Q
    | ||||||||| |||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  46404017 aggaaattgacccttacactaacattttaggtaccaaagaagagatgatctatgctttgaagtttttgcttgaagtgcgtacgggggacgaaattggg 46403920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 57 - 291
Target Start/End: Complemental strand, 43277601 - 43277363
Alignment:
Q  57 tgcaaatgaaatatgtgtgaactttactta-aagaatatgacttgaatctatttt--cttaaatatttttgattgagaagttttgatactatctatttta 153  Q
    ||||||| | || ||||||||| ||||||  ||||||||||||||||| ||||||  ||||| | ||||| ||||| |||||||||||||||||||||||    
T  43277601 tgcaaataagatgtgtgtgaaccttactttgaagaatatgacttgaatgtattttttcttaatttttttttattgataagttttgatactatctatttta 43277502  T
Q  154 tgacattgttt-tggtgctttgagtatgaaccaatttagataaagaaattgacacttacactaatattttaggtaccaaagaagagatggtctatgcttt 252  Q
    ||||||||||| ||||||||||||||||||||||||| ||||| ||||||||| |||||||||||||||||||||| |||||||||||||||||| ||||    
T  43277501 tgacattgtttatggtgctttgagtatgaaccaatttggataaggaaattgacccttacactaatattttaggtactaaagaagagatggtctatacttt 43277402  T
Q  253 gaagtttttgcttgaagtgcgtacgggggacaaattggg 291  Q
    |  ||||||||||||||||||||||||| |||| |||||    
T  43277401 ggtgtttttgcttgaagtgcgtacggggaacaagttggg 43277363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 119 - 283
Target Start/End: Original strand, 16976031 - 16976195
Alignment:
Q  119 tttttgattgagaagttttgatactatctattttatgacattgttttggtgctttgagtatgaaccaatttagataaagaaattgacacttacactaata 218  Q
    |||||||||||||||||||||||||||||||||| || ||||||| | ||| ||||||||||||||||||| ||||| ||||||||| |||||||||| |    
T  16976031 tttttgattgagaagttttgatactatctattttgtggcattgttcttgtgttttgagtatgaaccaatttggataaggaaattgacccttacactaaca 16976130  T
Q  219 ttttaggtaccaaagaagagatggtctatgctttgaagtttttgcttgaagtgcgtacgggggac 283  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  16976131 ttttaggtaccaaagaagagatgatctatgctttgaagtttttgcttgaagtgcgtacgggggac 16976195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 119 - 291
Target Start/End: Complemental strand, 5004222 - 5004049
Alignment:
Q  119 tttttgattgagaagttttgatactatctattttatgacattgttttggtgctttgagtatgaaccaatttagataaagaaattgacacttacactaata 218  Q
    |||||||||||||||||||||||||||||||||| ||  |||||| | ||||||||||||||||||||||| ||||| ||||||||| |||||||||| |    
T  5004222 tttttgattgagaagttttgatactatctattttgtggtattgttcttgtgctttgagtatgaaccaatttggataaggaaattgacccttacactaaca 5004123  T
Q  219 ttttaggtaccaaagaagagatggtctatgctttgaagtttttgcttgaagtgcgtacgggggac-aaattggg 291  Q
    |||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  5004122 ttttaggtaccaaataagagatgatctatgctttgaagtttttgcttgaagtgcgtacgggggacgaaattggg 5004049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 119 - 291
Target Start/End: Complemental strand, 7336185 - 7336012
Alignment:
Q  119 tttttgattgagaagttttgatactatctattttatgacattgttttggtgctttgagtatgaaccaatttagataaagaaattgacacttacactaata 218  Q
    |||||||||||||||||||||||||||||||||| || ||||||| | ||||||||||||||||||||||| ||||| ||||||||| |||||||||| |    
T  7336185 tttttgattgagaagttttgatactatctattttgtggcattgttcttgtgctttgagtatgaaccaatttggataaggaaattgacccttacactaaca 7336086  T
Q  219 ttttaggtaccaaagaagagatggtctatgctttgaagtttttgcttgaagtgcgtacgggggac-aaattggg 291  Q
    ||||||||| ||||||||||||| | ||||||||||||||||||||||||||||||||||||||| ||||||||    
T  7336085 ttttaggtaacaaagaagagatgatttatgctttgaagtttttgcttgaagtgcgtacgggggacgaaattggg 7336012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 119 - 291
Target Start/End: Original strand, 9104810 - 9104983
Alignment:
Q  119 tttttgattgagaagttttgatactatctattttatgacattgttt-tggtgctttgagtatgaaccaatttagataaagaaattgacacttacactaat 217  Q
    |||||||||||||||||| |||||||| ||||||||| |||||||| | ||||||||||||||||||||||| ||||| ||||||||  ||| |||||||    
T  9104810 tttttgattgagaagtttcgatactatttattttatggcattgtttcttgtgctttgagtatgaaccaatttggataaggaaattgatccttgcactaat 9104909  T
Q  218 attttaggtaccaaagaagagatggtctatgctttgaagtttttgcttgaagtgcgtacgggggacaaattggg 291  Q
    ||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||    
T  9104910 attttaggtaccaaagaagagattgtctatgctttgaagtttctgcttgaagtgcgtacgggggacaaattggg 9104983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 35 - 291
Target Start/End: Complemental strand, 11937463 - 11937211
Alignment:
Q  35 ataattgattaaactagtataatgcaaatgaaatatgtgtgaactttacttaaagaatatgacttgaatctattttc-ttaaatatttttgattgagaag 133  Q
    |||| ||||||||||| ||||| ||||| ||||| ||||||||| ||| |||||| |||| |||||||| ||||||| |||  | ||||| |||||||||    
T  11937463 ataagtgattaaactattataaagcaaaagaaat-tgtgtgaaccttatttaaagcatataacttgaatgtattttccttatttctttttaattgagaag 11937365  T
Q  134 ttttgatactatctattttatgacattgttt-tggtgctttgagtatgaaccaatttagataaagaaattgacacttacactaatattttaggtaccaaa 232  Q
    ||||||||||||   |||||||||||||||| |  |||||||| ||||||||||||| ||||| ||||||||| ||||||||||||||||||||||||||    
T  11937364 ttttgatactat---ttttatgacattgtttcttatgctttgaatatgaaccaatttggataaggaaattgacccttacactaatattttaggtaccaaa 11937268  T
Q  233 gaagagatggtctatgctttgaagtttttgcttgaagtgcgtacgggggacaaattggg 291  Q
    ||||| || || |||||||||  | |||||||||||| |||| ||||| | ||||||||    
T  11937267 gaagacat-gtgtatgctttggtg-ttttgcttgaagcgcgtgcggggaaaaaattggg 11937211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 119 - 243
Target Start/End: Original strand, 8731455 - 8731581
Alignment:
Q  119 tttttgattgagaagttttgatactatctattttatgacattgttt-tggtgctttgagtatgaaccaatttagataaagaaattga-cacttacactaa 216  Q
    ||||||||||| |||| |||||||||||||||||||| |||||||| | ||||||||||||||||||||||| ||||| |||||||| | ||||||  ||    
T  8731455 tttttgattgataagtcttgatactatctattttatggcattgtttcttgtgctttgagtatgaaccaatttggataaggaaattgaccccttacatcaa 8731554  T
Q  217 tattttaggtaccaaagaagagatggt 243  Q
     ||||||||||| |||||||| |||||    
T  8731555 cattttaggtactaaagaagacatggt 8731581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 119 - 243
Target Start/End: Original strand, 9083342 - 9083468
Alignment:
Q  119 tttttgattgagaagttttgatactatctattttatgacattgttt-tggtgctttgagtatgaaccaatttagataaagaaattga-cacttacactaa 216  Q
    ||||||||||| |||| |||||||||||||||||||| |||||||| | ||||||||||||||||||||||| ||||| |||||||| | ||||||  ||    
T  9083342 tttttgattgataagtcttgatactatctattttatggcattgtttcttgtgctttgagtatgaaccaatttggataaggaaattgaccccttacatcaa 9083441  T
Q  217 tattttaggtaccaaagaagagatggt 243  Q
     ||||||||||| |||||||| |||||    
T  9083442 cattttaggtactaaagaagacatggt 9083468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 94 - 203
Target Start/End: Complemental strand, 17542224 - 17542113
Alignment:
Q  94 tgacttgaatctatttt-cttaaatatttttgattgagaagttttgatactatctattttatgacattgttt-tggtgctttgagtatgaaccaatttag 191  Q
    |||||||||| |||||| ||||| | ||||||||||  ||||||||||| |||||||||||||||||||||| ||||||||||||||||||| ||||| |    
T  17542224 tgacttgaatgtatttttcttaattctttttgattggtaagttttgatattatctattttatgacattgtttatggtgctttgagtatgaactaatttgg 17542125  T
Q  192 ataaagaaattg 203  Q
    |||| |||||||    
T  17542124 ataaggaaattg 17542113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 392 - 461
Target Start/End: Complemental strand, 11937101 - 11937032
Alignment:
Q  392 atgatgaaaagaaaatagtagtaattttcgaaaataagaatgaattaggagtaatgtcttggatcaaaat 461  Q
    ||||| ||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||    
T  11937101 atgataaaaagaaaatagtagtaattttcgaaaataagaatgatttaggcgtaatgtcttggattaaaat 11937032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 119 - 219
Target Start/End: Original strand, 5704628 - 5704729
Alignment:
Q  119 tttttgattgagaagttttgatactatctattttatgacattgttt-tggtgctttgagtatgaaccaatttagataaagaaattgacacttacactaat 217  Q
    |||||||| |||||| ||| |||||||||||||||   |||||||| | ||||||||||||||||||||||| ||||| ||||||||| |||||| ||||    
T  5704628 tttttgatcgagaagattttatactatctattttagagcattgtttcttgtgctttgagtatgaaccaatttggataaggaaattgacccttacattaat 5704727  T
Q  218 at 219  Q
    ||    
T  5704728 at 5704729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 398 - 479
Target Start/End: Complemental strand, 43277244 - 43277163
Alignment:
Q  398 aaaagaaaatagtagtaattttcgaaaataagaatgaattaggagtaatgtcttggatcaaaatccgggacgttacattaac 479  Q
    |||| ||||||||||||||||| |||||| ||||||||||||||||||||| ||||||||||||| | | ||||||| ||||    
T  43277244 aaaaaaaaatagtagtaatttttgaaaatgagaatgaattaggagtaatgtattggatcaaaatctgaggcgttacagtaac 43277163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 143 - 219
Target Start/End: Original strand, 1461494 - 1461571
Alignment:
Q  143 tatctattttatgacattgttt-tggtgctttgagtatgaaccaatttagataaagaaattgacacttacactaatat 219  Q
    ||||||||||| | |||||||| | ||||||||||||||||| ||||| ||||| ||||||||| |||||| ||||||    
T  1461494 tatctattttagggcattgtttcttgtgctttgagtatgaactaatttggataaggaaattgactcttacattaatat 1461571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 441 - 474
Target Start/End: Original strand, 5704964 - 5704997
Alignment:
Q  441 agtaatgtcttggatcaaaatccgggacgttaca 474  Q
    ||||||||||||||||||||||||||||||||||    
T  5704964 agtaatgtcttggatcaaaatccgggacgttaca 5704997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 391 - 474
Target Start/End: Original strand, 9105083 - 9105168
Alignment:
Q  391 gatgatgaaaagaaaatagtagtaatttt-cgaaaa-taagaatgaattaggagtaatgtcttggatcaaaatccgggacgttaca 474  Q
    |||||| ||||||||||||||||| |||| |||||| |  |||||||| ||| ||||||||||||| ||||||| ||| |||||||    
T  9105083 gatgataaaaagaaaatagtagtagtttttcgaaaaatgtgaatgaataaggcgtaatgtcttggaccaaaatctggggcgttaca 9105168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 430 - 475
Target Start/End: Original strand, 16976354 - 16976399
Alignment:
Q  430 aatgaattaggagtaatgtcttggatcaaaatccgggacgttacat 475  Q
    ||||| ||||||||||||||||||| ||||||||||| ||||||||    
T  16976354 aatgatttaggagtaatgtcttggaccaaaatccggggcgttacat 16976399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 398 - 474
Target Start/End: Original strand, 31283660 - 31283737
Alignment:
Q  398 aaaagaaaatagtagtaattttcgaaaa-taagaatgaattaggagtaatgtcttggatcaaaatccgggacgttaca 474  Q
    |||| |||||| ||||  |||||||||| ||| ||||||||||| ||||||||||||||||||||  |||| ||||||    
T  31283660 aaaaaaaaatactagtgtttttcgaaaaataaaaatgaattaggcgtaatgtcttggatcaaaatttgggatgttaca 31283737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 422 - 475
Target Start/End: Complemental strand, 3504564 - 3504511
Alignment:
Q  422 aaaataagaatgaattaggagtaatgtcttggatcaaaatccgggacgttacat 475  Q
    |||||||  |||||||||| | ||||||||||||||||||||||  ||||||||    
T  3504564 aaaataaatatgaattaggcgaaatgtcttggatcaaaatccggagcgttacat 3504511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 421 - 474
Target Start/End: Complemental strand, 17537671 - 17537618
Alignment:
Q  421 gaaaataagaatgaattaggagtaatgtcttggatcaaaatccgggacgttaca 474  Q
    ||||| || ||||| ||||| ||||||||||||| ||||||||||| |||||||    
T  17537671 gaaaaaaaaaatgatttaggcgtaatgtcttggaacaaaatccggggcgttaca 17537618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 430 - 474
Target Start/End: Complemental strand, 46403769 - 46403725
Alignment:
Q  430 aatgaattaggagtaatgtcttggatcaaaatccgggacgttaca 474  Q
    ||||| ||||| ||||||||||||||||||||| ||| |||||||    
T  46403769 aatgatttaggcgtaatgtcttggatcaaaatctggggcgttaca 46403725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 135; Significance: 5e-70; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 135; E-Value: 5e-70
Query Start/End: Original strand, 35 - 283
Target Start/End: Original strand, 69929 - 70177
Alignment:
Q  35 ataattgattaaactagtataatgcaaatgaaatatgtgtgaactttactta-aagaatatgacttgaatctattttcttaaatatttttgattgagaag 133  Q
    |||| ||||||||||| | || ||||||| | || || |||||| ||||||  ||| ||||||||||||| ||||||||||||| |||| ||||||||||    
T  69929 ataagtgattaaactattttattgcaaataagatgtgcgtgaaccttacttcgaagcatatgacttgaatgtattttcttaaatctttt-gattgagaag 70027  T
Q  134 ttttgatactatctattttatgacattgttt-tggtgctttgagtatgaaccaatttagataaagaaattgacacttacactaatattttaggtaccaaa 232  Q
    |||||||| ||||||||||||||||| |||| |||||||| |||||||||||||||| ||||| ||||||||  |||||||||| ||||||| |||||||    
T  70028 ttttgatattatctattttatgacatagtttctggtgctt-gagtatgaaccaatttggataaggaaattgatccttacactaacattttagataccaaa 70126  T
Q  233 gaagagatggtctatgctttgaagtttttgcttgaagtgcgtacgggggac 283  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  70127 gaagagatggtctatgctttgaagtttttgcttgaagtgcgtacgggggac 70177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 70 - 291
Target Start/End: Original strand, 55162853 - 55163077
Alignment:
Q  70 tgtgtgaactttactta-aagaatatgacttgaatcta-ttttcttaaatatttttgattgagaagttttgatactatctattttatgacattgttt-tg 166  Q
    ||||||||| ||||||  ||| || |||||||||| || ||||||||| | ||||||||||| ||||||||||| |||||||||||||||||||||| ||    
T  55162853 tgtgtgaaccttactttgaagcatgtgacttgaatgtaattttcttaattctttttgattgataagttttgatattatctattttatgacattgtttctg 55162952  T
Q  167 gtgctttgagtatgaaccaatttagataaagaaattgacacttacactaatattttaggtaccaaagaagagatggtctatgctttgaagtttttgcttg 266  Q
    ||||||||||||||||||||||| ||||| ||||||||| |||||||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||    
T  55162953 gtgctttgagtatgaaccaatttggataaggaaattgacccttacactaacattttaggcaccaaagaagagatggtctatgctttgaagtttttacttg 55163052  T
Q  267 aagtgcgtacgggggacaaattggg 291  Q
    ||||| |||||| | ||||||||||    
T  55163053 aagtgtgtacggcgaacaaattggg 55163077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 35 - 289
Target Start/End: Original strand, 49499686 - 49499940
Alignment:
Q  35 ataattgattaaactagtataatgcaaatgaaatatgtgtgaactttacttaaagaatatgacttgaatctatttt-cttaaatatttttgattgagaag 133  Q
    |||| ||||||||||| ||||| ||||| ||||| ||||||||| ||| |||||| |||| |||||||| |||||| ||||  | ||||| |||||||||    
T  49499686 ataagtgattaaactattataaagcaaaagaaat-tgtgtgaacctta-ttaaagcatataacttgaatgtatttttcttatttctttttaattgagaag 49499783  T
Q  134 ttttgatactatctattttatgacattgttt-tggtgctttgagtatgaaccaatttagataaagaaattgacacttacactaatattttaggtaccaaa 232  Q
    ||||||||  ||||||||||||||||||||| |||||||| |||||||||| ||||| ||||| ||||||||| |||||||||| ||||||||| | |||    
T  49499784 ttttgatatgatctattttatgacattgtttctggtgctt-gagtatgaactaatttggataaggaaattgacccttacactaacattttaggtgctaaa 49499882  T
Q  233 gaagagatggtctatgctttgaagttttt-gcttgaagtgcgtacgggggacaaattg 289  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  49499883 gaagagatggtctatgctttgaagtttttcgcttgaagtgcgtacgggggacaaattg 49499940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 119 - 291
Target Start/End: Original strand, 40459664 - 40459837
Alignment:
Q  119 tttttgattgagaagttttgatactatctattttatgacattgttttggtgctttgagtatgaaccaatttagataaagaaattgacacttacactaata 218  Q
    |||||||||||||||||||||||||||||||||| || ||||||| | ||||||||||||||||||||||| ||||| ||||||||| ||| |||||| |    
T  40459664 tttttgattgagaagttttgatactatctattttgtggcattgttcttgtgctttgagtatgaaccaatttggataaggaaattgacccttgcactaaca 40459763  T
Q  219 ttttaggtaccaaagaagagatggtctatgctttgaagtttttgcttgaagtgcgtacgggggac-aaattggg 291  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| ||||||||    
T  40459764 ttttaggtaccaaagaagagatgatctatgctttgaagtttttgcttgaagtgcgtacaggggacgaaattggg 40459837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 57 - 286
Target Start/End: Complemental strand, 28968796 - 28968564
Alignment:
Q  57 tgcaaatgaaatatgtgtgaactttactta-aagaatatgacttgaatctatttt-cttaaatatttttgattgagaagttttgatactatctattttat 154  Q
    ||||||| | || ||||||||| ||||||  ||| || |||||||||| |||||| ||||| |  |||| ||||  ||||||||||| ||||||||||||    
T  28968796 tgcaaataagatgtgtgtgaaccttactttgaagcatgtgacttgaatgtatttttcttaattcgtttttattggtaagttttgatattatctattttat 28968697  T
Q  155 gacattgttt-tggtgctttgagtatgaaccaatttagataaagaaattgacacttacactaatattttaggtaccaaagaagagatggtctatgctttg 253  Q
    || ||||||| | ||||||||||||| ||||||||| ||||| ||||||||| |||||||||| |||||||||||||||||| |||||||||||||||||    
T  28968696 gagattgtttcttgtgctttgagtatcaaccaatttggataaggaaattgacccttacactaacattttaggtaccaaagaaaagatggtctatgctttg 28968597  T
Q  254 aagtttttgcttgaagtgcgtacgggggacaaa 286  Q
    ||||||||||||||||||| |||||||||||||    
T  28968596 aagtttttgcttgaagtgcatacgggggacaaa 28968564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 35 - 277
Target Start/End: Complemental strand, 2761670 - 2761427
Alignment:
Q  35 ataattgattaaactagtataatgcaaatgaaatatgtgtgaactttacttaaa-gaatatgacttgaatctatttt-cttaaatatttttgattgagaa 132  Q
    |||| ||||||||||| ||| ||||||| ||||| ||| ||||||||||||||| | |||||| |||||| |||||| ||||  | ||||||||||||||    
T  2761670 ataagtgattaaactattatgatgcaaaagaaatgtgtatgaactttacttaaaagcatatgatttgaatgtatttttcttatttctttttgattgagaa 2761571  T
Q  133 gttttgatactatctattttatgacattgttttggtgctttgagtatgaaccaatttagataaagaaattgacacttacac--taatattttaggtacca 230  Q
    |||| |||||||||||||||||| |||| ||   ||||||||||||||||||||||| ||||| ||||||||| |||||||  |||||||||||||| ||    
T  2761570 gtttagatactatctattttatggcattctt---gtgctttgagtatgaaccaatttggataaggaaattgacccttacacactaatattttaggtatca 2761474  T
Q  231 aagaagagatggtctatgctttgaagtttttgcttgaagtgcgtacg 277  Q
    ||||||| ||||| |||||||||  |||||||||||||| |||||||    
T  2761473 aagaagacatggtgtatgctttggtgtttttgcttgaagcgcgtacg 2761427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 474 - 563
Target Start/End: Complemental strand, 1751099 - 1751010
Alignment:
Q  474 attaaccctcaaagtgttgcatgtttctagactttgtcatgggcaaggctctataaaagcaaaatgtattatgtttcgtgttcactgaac 563  Q
    |||||||||||||||||| || ||||||||||||||| ||||||||| ||||||||||||||||||||||||||||  ||||||||||||    
T  1751099 attaaccctcaaagtgttacacgtttctagactttgtgatgggcaagactctataaaagcaaaatgtattatgttttatgttcactgaac 1751010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 119 - 219
Target Start/End: Original strand, 10276761 - 10276862
Alignment:
Q  119 tttttgattgagaagttttgatactatctattttatgacattgttt-tggtgctttgagtatgaaccaatttagataaagaaattgacacttacactaat 217  Q
    |||||||| |||||| ||| |||||||||||||||   |||||||| | |||||||||||||||||||||||  |||| ||||||||| |||||| ||||    
T  10276761 tttttgatcgagaagattttatactatctattttagagcattgtttcttgtgctttgagtatgaaccaatttgtataaggaaattgacccttacattaat 10276860  T
Q  218 at 219  Q
    ||    
T  10276861 at 10276862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 119 - 195
Target Start/End: Original strand, 41869381 - 41869458
Alignment:
Q  119 tttttgattgagaagttttgatactatctattttatgacattgttt-tggtgctttgagtatgaaccaatttagataa 195  Q
    ||||||||||||||||||||||| |||||||||  ||||||| ||| | ||||||||||||||||| ||||| |||||    
T  41869381 tttttgattgagaagttttgatattatctatttcgtgacattatttcttgtgctttgagtatgaactaatttggataa 41869458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 209 - 269
Target Start/End: Complemental strand, 34828169 - 34828109
Alignment:
Q  209 tacactaatattttaggtaccaaagaagagatggtctatgctttgaagtttttgcttgaag 269  Q
    ||||| || ||||||||||||||| |||| ||||| |||||||||| ||||||||||||||    
T  34828169 tacaccaacattttaggtaccaaaaaagacatggtgtatgctttgatgtttttgcttgaag 34828109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 479 - 525
Target Start/End: Complemental strand, 45796223 - 45796177
Alignment:
Q  479 ccctcaaagtgttgcatgtttctagactttgtcatgggcaaggctct 525  Q
    ||||||||||||| |||||||| ||||||||| ||||||||||||||    
T  45796223 ccctcaaagtgttacatgtttccagactttgtaatgggcaaggctct 45796177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 422 - 474
Target Start/End: Original strand, 70289 - 70341
Alignment:
Q  422 aaaataagaatgaattaggagtaatgtcttggatcaaaatccgggacgttaca 474  Q
    ||||| ||||||| ||||| ||||||||||||| ||||||||||| |||||||    
T  70289 aaaatgagaatgatttaggcgtaatgtcttggaccaaaatccggggcgttaca 70341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 219 - 279
Target Start/End: Complemental strand, 42898406 - 42898347
Alignment:
Q  219 ttttaggtaccaaagaagagatggtctatgctttgaagtttttgcttgaagtgcgtacggg 279  Q
    |||||||||  |||||||||||| |||| |||||||||  |||||||||||||||||||||    
T  42898406 ttttaggtattaaagaagagatg-tctacgctttgaagcgtttgcttgaagtgcgtacggg 42898347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 484 - 532
Target Start/End: Original strand, 45795772 - 45795820
Alignment:
Q  484 aaagtgttgcatgtttctagactttgtcatgggcaaggctctataaaag 532  Q
    |||||||| |||||||| | ||||||| |||||||||||||||||||||    
T  45795772 aaagtgttacatgtttccaaactttgtgatgggcaaggctctataaaag 45795820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 430 - 474
Target Start/End: Original strand, 40459985 - 40460029
Alignment:
Q  430 aatgaattaggagtaatgtcttggatcaaaatccgggacgttaca 474  Q
    ||||| ||||| ||||||||||||| ||||||||||| |||||||    
T  40459985 aatgatttaggcgtaatgtcttggaccaaaatccggggcgttaca 40460029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0413 (Bit Score: 118; Significance: 6e-60; HSPs: 1)
Name: scaffold0413
Description:

Target: scaffold0413; HSP #1
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 119 - 291
Target Start/End: Original strand, 145 - 318
Alignment:
Q  119 tttttgattgagaagttttgatactatctattttatgacattgttttggtgctttgagtatgaaccaatttagataaagaaattgacacttacactaata 218  Q
    |||||||||||||||||||||||||||||||||| || ||||||| | |||||||||||||||| |||||| ||||| ||||||||| |||||||||| |    
T  145 tttttgattgagaagttttgatactatctattttgtggcattgttcttgtgctttgagtatgaatcaatttggataaggaaattgacccttacactaaca 244  T
Q  219 ttttaggtaccaaagaagagatggtctatgctttgaagtttttgcttgaagtgcgtacgggggac-aaattggg 291  Q
    ||||||||| ||||||||||||| | ||||||||||||||||||||||||||||||||||||||| ||||||||    
T  245 ttttaggtaacaaagaagagatgatttatgctttgaagtttttgcttgaagtgcgtacgggggacgaaattggg 318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0657 (Bit Score: 114; Significance: 2e-57; HSPs: 3)
Name: scaffold0657
Description:

Target: scaffold0657; HSP #1
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 119 - 291
Target Start/End: Complemental strand, 1831 - 1658
Alignment:
Q  119 tttttgattgagaagttttgatactatctattttatgacattgttttggtgctttgagtatgaaccaatttagataaagaaattgacacttacactaata 218  Q
    |||||||||||||||||||||||||||||||||| || ||||||| | |||||||| |||||||||||||| ||||| ||||||||| |||||||||| |    
T  1831 tttttgattgagaagttttgatactatctattttgtggcattgttcttgtgctttgggtatgaaccaatttggataaggaaattgacccttacactaaca 1732  T
Q  219 ttttaggtaccaaagaagagatggtctatgctttgaagtttttgcttgaagtgcgtacgggggac-aaattggg 291  Q
    ||||||||||||||||||||||| ||||| |||||||||||||||| ||||||| |||||||||| ||||||||    
T  1731 ttttaggtaccaaagaagagatgatctatactttgaagtttttgctggaagtgcatacgggggacgaaattggg 1658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0657; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 430 - 477
Target Start/End: Complemental strand, 1508 - 1461
Alignment:
Q  430 aatgaattaggagtaatgtcttggatcaaaatccgggacgttacatta 477  Q
    ||||| ||||| ||||||||||||| ||||||||||| ||||||||||    
T  1508 aatgatttaggcgtaatgtcttggaccaaaatccggggcgttacatta 1461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0657; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 430 - 477
Target Start/End: Complemental strand, 8620 - 8573
Alignment:
Q  430 aatgaattaggagtaatgtcttggatcaaaatccgggacgttacatta 477  Q
    ||||| ||||| ||||||||||||| ||||||||||| ||||||||||    
T  8620 aatgatttaggcgtaatgtcttggaccaaaatccggggcgttacatta 8573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 109; Significance: 2e-54; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 119 - 290
Target Start/End: Complemental strand, 32838 - 32669
Alignment:
Q  119 tttttgattgagaagttttgatactatctattttatgacattgttttggtgctttgagtatgaaccaatttagataaagaaattgacacttacactaata 218  Q
    |||||||||||||||||||||||||||||||||| || | ||||| | ||||||||||||||||||||||| ||||| ||||||||| |||||||||| |    
T  32838 tttttgattgagaagttttgatactatctattttgtggctttgttcttgtgctttgagtatgaaccaatttggataaggaaattgacccttacactaaca 32739  T
Q  219 ttttaggtaccaaagaagagatggtctatgctttgaagtttttgcttgaagtgcgtacgggggacaaattgg 290  Q
    |||||||||||||||  ||||||||||||||||||||||||||  ||||||||||||  |||||||||||||    
T  32738 ttttaggtaccaaag--gagatggtctatgctttgaagttttttgttgaagtgcgtataggggacaaattgg 32669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 102; Significance: 2e-50; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 19 - 229
Target Start/End: Complemental strand, 242640 - 242428
Alignment:
Q  19 gtatatttgtgattttataattgattaaactagtataatgcaaatgaaatatgtgtgaactttacttaaagaatatgacttgaatcta-ttttcttaaat 117  Q
    ||||||||||||||||||||||||||||| || | |||||||||||||||  |||||||||||||||||||||||||| |||||| || ||||||||| |    
T  242640 gtatatttgtgattttataattgattaaaatattctaatgcaaatgaaatgggtgtgaactttacttaaagaatatga-ttgaatgtatttttcttaatt 242542  T
Q  118 atttttgattgagaagttttgatactatctattttatgacattgttt-tggtgctttgagtatgaaccaatttagataaagaaattgacac-ttacacta 215  Q
     |||||||||||||||||||||||  ||||| ||||| ||||||||| | |||||||||||||||||||||||  | || ||||||||| | |||||| |    
T  242541 ctttttgattgagaagttttgatatcatctaatttataacattgtttcttgtgctttgagtatgaaccaatttgaacaaggaaattgaccctttacacca 242442  T
Q  216 atattttaggtacc 229  Q
    | ||||||||||||    
T  242441 acattttaggtacc 242428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0120 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0120
Description:

Target: scaffold0120; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 119 - 219
Target Start/End: Complemental strand, 2216 - 2115
Alignment:
Q  119 tttttgattgagaagttttgatactatctattttatgacattgttt-tggtgctttgagtatgaaccaatttagataaagaaattgacacttacactaat 217  Q
    |||||||| |||||| ||| |||||||||||||||   |||||||| | ||||||||||||||||||||||| ||||| ||||||||| |||||| ||||    
T  2216 tttttgatcgagaagattttatactatctattttagagcattgtttcttgtgctttgagtatgaaccaatttggataaggaaattgacccttacattaat 2117  T
Q  218 at 219  Q
    ||    
T  2116 at 2115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 119 - 218
Target Start/End: Original strand, 11410 - 11510
Alignment:
Q  119 tttttgattgagaagttttgatactatctattttatgacattgttttg-gtgctttgagtatgaaccaatttagataaagaaattgacacttacactaat 217  Q
    ||||||||||||||  ||| |||||||||||||||   |||||||||  ||||||||||||||||||||||| ||||| ||||||||  |||||| ||||    
T  11410 tttttgattgagaaaattttatactatctattttagagcattgttttttgtgctttgagtatgaaccaatttggataaggaaattgatccttacattaat 11509  T
Q  218 a 218  Q
    |    
T  11510 a 11510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 119 - 218
Target Start/End: Complemental strand, 356456 - 356356
Alignment:
Q  119 tttttgattgagaagttttgatactatctattttatgacattgttt-tggtgctttgagtatgaaccaatttagataaagaaattgacacttacactaat 217  Q
    |||||||| |||||| ||| |||||||||||||||   |||||||| | |||||||||||||||||||||||  |||| ||||||||| |||||| ||||    
T  356456 tttttgatcgagaagattttatactatctattttagagcattgtttcttgtgctttgagtatgaaccaatttgaataaggaaattgacccttacattaat 356357  T
Q  218 a 218  Q
    |    
T  356356 a 356356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 441 - 477
Target Start/End: Complemental strand, 356108 - 356072
Alignment:
Q  441 agtaatgtcttggatcaaaatccgggacgttacatta 477  Q
    ||||||||||||||| |||||||||| ||||||||||    
T  356108 agtaatgtcttggatgaaaatccggggcgttacatta 356072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 443 - 477
Target Start/End: Complemental strand, 147556 - 147522
Alignment:
Q  443 taatgtcttggatcaaaatccgggacgttacatta 477  Q
    ||||||||||||| |||||||||||||||||||||    
T  147556 taatgtcttggataaaaatccgggacgttacatta 147522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 119 - 218
Target Start/End: Original strand, 89870 - 89970
Alignment:
Q  119 tttttgattgagaagttttgatactatctattttatgacattgttt-tggtgctttgagtatgaaccaatttagataaagaaattgacacttacactaat 217  Q
    |||||||  |||||| ||| |||||||||||||||   |||||||| | ||||||| ||||||| ||||||| ||||   |||||||| |||||| ||||    
T  89870 tttttgaccgagaagattttatactatctattttagagcattgtttattgtgctttaagtatgacccaatttggataggaaaattgacccttacattaat 89969  T
Q  218 a 218  Q
    |    
T  89970 a 89970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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