View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3471_low_10 (Length: 445)
Name: NF3471_low_10
Description: NF3471
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3471_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 417; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 12 - 432
Target Start/End: Original strand, 43370766 - 43371186
Alignment:
| Q |
12 |
tcatcaaatgttatccagactattctacaagttagttagatgcaaacttttctgtattcctctttgtccttgtatttgttgtatgagtacatcacgcgat |
111 |
Q |
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| T |
43370766 |
tcatcaaatgttatccagactattctacaagttagttagatgcaaacttttctgtattcctctttgtccttgtatttgtcgtatgagtacatcacgcgat |
43370865 |
T |
|
| Q |
112 |
gaccgcaacaaagctagttttagtgcttctttcttaaaatgatatatttatctccttttatgcaggcatttgctcaagtgcctgatttgagcatatggta |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43370866 |
gaccgcaacaaagctagttttagtgcttctttcttaaaatgatatatttatctccttttatgcaggcatttgctcaagtgcctgatttgagcatatggta |
43370965 |
T |
|
| Q |
212 |
tgggcctgattcttacatgggggcaaatatcgtagaattgttccaacagatgacagtaatgaccgacgaagaggttgctgcgatacatcctgagcacaat |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43370966 |
tgggcctgattcttacatgggggcaaatatcgtagaattgttccaacagatgacagtaatgaccgacgaagaggttgctgcgatacatcctgagcacaat |
43371065 |
T |
|
| Q |
312 |
gtagactctattaaatcattactaccacgactccactattttcaggtaaggtctttaagatgttttaaaaagcaaatgaagaacttagaattcacattat |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43371066 |
gtagactctattaaatcattactaccacgactccactattttcaggtaaggtctttaagatgttttaaaaagcaaatgaagaacttagaattcacattat |
43371165 |
T |
|
| Q |
412 |
ttgcaatccgatgtgctgcat |
432 |
Q |
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||||||||||||||||||||| |
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| T |
43371166 |
ttgcaatccgatgtgctgcat |
43371186 |
T |
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