View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3471_low_11 (Length: 427)
Name: NF3471_low_11
Description: NF3471
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3471_low_11 |
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| [»] scaffold0268 (1 HSPs) |
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| [»] scaffold1052 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 16 - 406
Target Start/End: Complemental strand, 325971 - 325590
Alignment:
| Q |
16 |
attggattatagaaatcattaatgggtatactttgagctgagttgcaattcgagttttgcaaaacatagttttaatttaattcaattttatagagaaaat |
115 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| | |
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| T |
325971 |
attggattatagaaatcattaatggatatactttgagctgagttgcaattcgagttttgcaaaacataattttaatttaattcaattttacagagaaact |
325872 |
T |
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| Q |
116 |
atgataaaattaataaataggacacataattccattgctgttgttgttgaaggtaaaatggaaaacaagatttaaaatgatgaagcaaaatttctaggat |
215 |
Q |
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||||||||||||| |||||||||||| |||| ||||| |||||||||||||| ||||| |||||||||||||||||||||||||| |||||| |
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| T |
325871 |
atgataaaattaacaaataggacacacaatttcattg---------ttgaaggtaaaatgaaaaacgagatttaaaatgatgaagcaaaatttgtaggat |
325781 |
T |
|
| Q |
216 |
gaaggcaaggaagaggaaggagaaggagaaagaaacgagatttagtgttgagagactgcataaaacatgttttaaaacttgtttttggtttgatgttgga |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
325780 |
gaaggcaaggaagaggaaggagaaggagaaagaaacgagatctaccgttgagagactgcataaaacatgttttaaaacttgtttttgatttgatgttgga |
325681 |
T |
|
| Q |
316 |
aactggatccaaaattgcgatctacccatttctgtttcatgaaccacccttaaatggcgtgtaaaacatttggttcagtgaagtattgagg |
406 |
Q |
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| T |
325680 |
aactgaatccaaaattgcgatctacccatttatgtttcatgaaccacccttaaatggtgtgtaaaacatttggttcagtgaagtattgagg |
325590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 16 - 266
Target Start/End: Complemental strand, 10200443 - 10200193
Alignment:
| Q |
16 |
attggattatagaaatcattaatgggtatactttgagctgagttgcaattcgagttttgcaaaacatagttttaatttaattcaattttatagagaaaat |
115 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | |
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| T |
10200443 |
attggattatagaaatcattaatggatatactttgagctgagttgcaattcgagttttgcaaaacatagttttaatttaattcaattttactgagaaact |
10200344 |
T |
|
| Q |
116 |
atgataaaattaataaataggacacataattccattgctgttgttgttgaaggtaaaatggaaaacaagatttaaaatgatgaagcaaaatttctaggat |
215 |
Q |
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||||||||||||| |||||||||||| |||||||||||||||||||||| | |||||||||||||| |||||||||||||||||||||| ||| |||||| |
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| T |
10200343 |
atgataaaattaacaaataggacacacaattccattgctgttgttgttggaagtaaaatggaaaacgagatttaaaatgatgaagcaaattttgtaggat |
10200244 |
T |
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| Q |
216 |
gaaggcaaggaagaggaaggagaaggagaaagaaacgagatttagtgttga |
266 |
Q |
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| T |
10200243 |
gaaggcaaggaagaggaaggagaaggagaaagaaatgagatctagtgttga |
10200193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0268 (Bit Score: 183; Significance: 7e-99; HSPs: 1)
Name: scaffold0268
Description:
Target: scaffold0268; HSP #1
Raw Score: 183; E-Value: 7e-99
Query Start/End: Original strand, 16 - 266
Target Start/End: Original strand, 20479 - 20729
Alignment:
| Q |
16 |
attggattatagaaatcattaatgggtatactttgagctgagttgcaattcgagttttgcaaaacatagttttaatttaattcaattttatagagaaaat |
115 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| ||||||| | |
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| T |
20479 |
attggattatagaaatcattaatggatatactttgagctgagttgcaatttgagttttgcgaaacatagttttaatttaattcaattttacagagaaact |
20578 |
T |
|
| Q |
116 |
atgataaaattaataaataggacacataattccattgctgttgttgttgaaggtaaaatggaaaacaagatttaaaatgatgaagcaaaatttctaggat |
215 |
Q |
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||||||||||||| |||||||||||| |||||||||| ||||||||||| | ||||||||||||| |||||||||| ||||||||||||||| |||||| |
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| T |
20579 |
atgataaaattaacaaataggacacacaattccattgttgttgttgttggaagtaaaatggaaaaggagatttaaaacgatgaagcaaaatttgtaggat |
20678 |
T |
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| Q |
216 |
gaaggcaaggaagaggaaggagaaggagaaagaaacgagatttagtgttga |
266 |
Q |
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| T |
20679 |
gaaggcaaggaagaggaaggagaaggagaaataaatgagatctagtgttga |
20729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 109 - 180
Target Start/End: Original strand, 5101241 - 5101312
Alignment:
| Q |
109 |
agaaaatatgataaaattaataaataggacacataattccattgctgttgttgttgaaggtaaaatggaaaa |
180 |
Q |
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||||| ||||||||||| || |||||||||||| || | ||||| ||||||||||||||||||| ||||||| |
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| T |
5101241 |
agaaactatgataaaatcaacaaataggacacacaaattcattgttgttgttgttgaaggtaaagtggaaaa |
5101312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 109 - 170
Target Start/End: Original strand, 32356279 - 32356340
Alignment:
| Q |
109 |
agaaaatatgataaaattaataaataggacacataattccattgctgttgttgttgaaggta |
170 |
Q |
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||||| ||||||||||| || |||||||||||| || | ||||| ||||||||||||||||| |
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| T |
32356279 |
agaaactatgataaaatcaacaaataggacacacaaattcattgttgttgttgttgaaggta |
32356340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 109 - 170
Target Start/End: Original strand, 6182506 - 6182567
Alignment:
| Q |
109 |
agaaaatatgataaaattaataaataggacacataattccattgctgttgttgttgaaggta |
170 |
Q |
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||||| ||||||||||| || |||||||||||| || | ||||| ||||||||||||||||| |
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| T |
6182506 |
agaaactatgataaaatcaacaaataggacacacaaattcattgttgttgttgttgaaggta |
6182567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1052 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold1052
Description:
Target: scaffold1052; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 109 - 180
Target Start/End: Original strand, 750 - 821
Alignment:
| Q |
109 |
agaaaatatgataaaattaataaataggacacataattccattgctgttgttgttgaaggtaaaatggaaaa |
180 |
Q |
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||||| ||||||||||| || |||||||||||| || | ||||| |||||||||| ||||||| ||||||| |
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| T |
750 |
agaaactatgataaaatcaagaaataggacacacaaattcattgttgttgttgttagaggtaaagtggaaaa |
821 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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