View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3471_low_14 (Length: 401)
Name: NF3471_low_14
Description: NF3471
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3471_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 115 - 388
Target Start/End: Complemental strand, 32165778 - 32165510
Alignment:
| Q |
115 |
aacccattttctgaatgcgagtatgaatcagttcaataaaatttgcatctttgggcaaaagtgagcgccgaaaagaaagtaagccttttgggcgaggaat |
214 |
Q |
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| T |
32165778 |
aacccattttctgaatgtgagtatgaat----tcaataaaatttgcatctttgggcaaaagtgagcgccgaaaagaaagtaagccttttgggcgaggaat |
32165683 |
T |
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| Q |
215 |
ctgatgatatcattgaaagggaagttgtttggattatgcagttggtgaaagacacaagagatcgatttgagatacgtagtggccaatcagacgcgtagct |
314 |
Q |
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| T |
32165682 |
ctgatgatatcattgaaagggaagttgtttggattatgcagttggtgaaagacac-agagatcgatttgagatatgtagtggccaatcagacgcgtagct |
32165584 |
T |
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| Q |
315 |
atgagattgtgttggtgtgctccaaattggaaaatgtgtgcatggatttggagaagatgaggaagagaaagatg |
388 |
Q |
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| T |
32165583 |
atgagattgtgttggtgtgctccaaattggaaaatgtgtgcatggatttggagaagatgaggaagagaaagatg |
32165510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 8 - 92
Target Start/End: Complemental strand, 32165854 - 32165770
Alignment:
| Q |
8 |
gagcagaacctgtgatcaaagaagtccaacagataactacacttttgtcaagaattttttggcatacacggcaaccaacccattt |
92 |
Q |
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| T |
32165854 |
gagcataaccagtgatcaaagaaatccaacagataactacacttttgtcaagaattttttggcatacacggcaaccaacccattt |
32165770 |
T |
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