View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3471_low_15 (Length: 394)

Name: NF3471_low_15
Description: NF3471
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3471_low_15
NF3471_low_15
[»] chr5 (15 HSPs)
chr5 (95-365)||(38690814-38691079)
chr5 (63-113)||(38691094-38691144)
chr5 (362-394)||(38690762-38690794)
chr5 (160-202)||(4088478-4088520)
chr5 (160-202)||(7287184-7287226)
chr5 (160-202)||(16690534-16690576)
chr5 (160-202)||(26686916-26686958)
chr5 (160-202)||(26956647-26956689)
chr5 (160-202)||(35567535-35567577)
chr5 (139-184)||(14508181-14508226)
chr5 (160-209)||(23991265-23991314)
chr5 (151-213)||(33626620-33626684)
chr5 (160-209)||(38293346-38293395)
chr5 (138-202)||(20871005-20871069)
chr5 (10-46)||(40584144-40584180)
[»] chr2 (14 HSPs)
chr2 (134-209)||(3122262-3122337)
chr2 (134-213)||(8482216-8482295)
chr2 (159-201)||(4237059-4237101)
chr2 (160-194)||(32869861-32869895)
chr2 (139-186)||(1151530-1151577)
chr2 (160-202)||(8427587-8427629)
chr2 (160-202)||(18737868-18737910)
chr2 (160-193)||(15269896-15269929)
chr2 (145-194)||(34215284-34215333)
chr2 (139-184)||(42607543-42607588)
chr2 (139-188)||(44105111-44105160)
chr2 (159-195)||(6511558-6511594)
chr2 (134-186)||(43097551-43097602)
chr2 (10-46)||(44996644-44996680)
[»] chr8 (11 HSPs)
chr8 (139-203)||(30112805-30112869)
chr8 (160-202)||(37942901-37942943)
chr8 (134-184)||(40413362-40413412)
chr8 (140-201)||(14710889-14710950)
chr8 (10-46)||(999196-999232)
chr8 (10-46)||(11584195-11584231)
chr8 (134-210)||(29107992-29108068)
chr8 (140-202)||(157070-157132)
chr8 (160-202)||(45405566-45405608)
chr8 (140-184)||(11138910-11138954)
chr8 (166-243)||(14548781-14548854)
[»] chr6 (3 HSPs)
chr6 (139-210)||(32644625-32644696)
chr6 (146-195)||(12177586-12177635)
chr6 (166-243)||(12044372-12044445)
[»] chr3 (9 HSPs)
chr3 (139-194)||(9753169-9753224)
chr3 (160-202)||(26550272-26550314)
chr3 (10-46)||(5393770-5393806)
chr3 (160-195)||(19150320-19150355)
chr3 (160-194)||(32924271-32924305)
chr3 (139-176)||(46966121-46966158)
chr3 (139-191)||(11056928-11056980)
chr3 (10-46)||(48309942-48309978)
chr3 (159-195)||(52678579-52678615)
[»] chr4 (16 HSPs)
chr4 (139-209)||(28676140-28676210)
chr4 (139-181)||(41262645-41262687)
chr4 (160-209)||(37060352-37060401)
chr4 (139-202)||(12387660-12387723)
chr4 (166-209)||(23094416-23094459)
chr4 (139-194)||(50608627-50608681)
chr4 (139-201)||(32464611-32464673)
chr4 (10-46)||(8810670-8810706)
chr4 (139-195)||(28899217-28899273)
chr4 (140-184)||(29974340-29974384)
chr4 (139-191)||(32365673-32365725)
chr4 (139-195)||(33093117-33093173)
chr4 (139-215)||(37731928-37732004)
chr4 (134-174)||(38864770-38864810)
chr4 (159-207)||(45761234-45761282)
chr4 (158-194)||(48569291-48569327)
[»] chr7 (11 HSPs)
chr7 (139-184)||(24044760-24044805)
chr7 (158-209)||(23170159-23170210)
chr7 (139-202)||(45420055-45420118)
chr7 (140-174)||(11751174-11751208)
chr7 (134-184)||(26041318-26041368)
chr7 (160-202)||(33578309-33578351)
chr7 (160-202)||(47954096-47954138)
chr7 (13-46)||(24680908-24680941)
chr7 (140-184)||(23680051-23680095)
chr7 (134-194)||(34992338-34992398)
chr7 (139-191)||(49025320-49025372)
[»] chr1 (17 HSPs)
chr1 (10-46)||(35848509-35848545)
chr1 (134-243)||(43612038-43612143)
chr1 (153-201)||(52512963-52513011)
chr1 (134-209)||(40596042-40596117)
chr1 (159-193)||(8828126-8828160)
chr1 (160-202)||(9987986-9988028)
chr1 (160-202)||(42468627-42468669)
chr1 (160-202)||(49446792-49446834)
chr1 (160-194)||(49559201-49559235)
chr1 (160-202)||(49570031-49570073)
chr1 (160-202)||(49931588-49931630)
chr1 (134-184)||(50797788-50797838)
chr1 (133-174)||(8934630-8934671)
chr1 (160-201)||(32831163-32831203)
chr1 (161-202)||(32960384-32960425)
chr1 (145-194)||(37741955-37742004)
chr1 (13-46)||(38965449-38965482)
[»] scaffold0178 (1 HSPs)
scaffold0178 (160-194)||(9811-9845)
[»] scaffold0128 (1 HSPs)
scaffold0128 (160-209)||(10971-11020)
[»] scaffold0449 (1 HSPs)
scaffold0449 (159-195)||(7881-7917)


Alignment Details
Target: chr5 (Bit Score: 150; Significance: 3e-79; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 95 - 365
Target Start/End: Complemental strand, 38691079 - 38690814
Alignment:
Q  95 atattgtcacaaaatggttgtatgaatattannnnnnncaaagtgaaattatattcgtacaattattttgtgacaa-----------ctttctctttcat 183  Q
    |||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||           |||||||||||||    
T  38691079 atattgtcacaaaatggttgtatgaatattatttttttcaaagtgaaattatattcgtacaattattttgtgacaatttttaaacaactttctctttcat 38690980  T
Q  184 atttacattataattttaccctctcttcctcattctcgacctctccattgttttttaccataaaagttgcaccaaatggttgtttaaatacgaaaagtct 283  Q
    ||| ||||||||||||||| ||||||                |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  38690979 attcacattataattttactctctct----------------ctccattgttttttaccataaaagttgcaccaaatggttgttcaaatacgaaaagtct 38690896  T
Q  284 tacccaatgaaaatgaaagttcaaaggaatgagaaccctaaaacaccattacctcttgcaactcgatagacataaagaagag 365  Q
    |||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  38690895 tacccaatgaaaatgaaagttcaagggaatgagaaccctataacaccattacctcttgcaactcgatagacataaagaagag 38690814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 63 - 113
Target Start/End: Complemental strand, 38691144 - 38691094
Alignment:
Q  63 taacgagtgtatgaaagagagggttggctcagatattgtcacaaaatggtt 113  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  38691144 taacgagtgaatgaaagagagggttggctcagatattgtcacaaaatggtt 38691094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 362 - 394
Target Start/End: Complemental strand, 38690794 - 38690762
Alignment:
Q  362 agagaaagagagagatatgaagatgaggaaaaa 394  Q
    |||||||||||||||||||||||||||||||||    
T  38690794 agagaaagagagagatatgaagatgaggaaaaa 38690762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 160 - 202
Target Start/End: Original strand, 4088478 - 4088520
Alignment:
Q  160 ttttgtgacaactttctctttcatatttacattataattttac 202  Q
    ||||||||||||||||||||||||| | |||||||| ||||||    
T  4088478 ttttgtgacaactttctctttcatactcacattatatttttac 4088520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 160 - 202
Target Start/End: Complemental strand, 7287226 - 7287184
Alignment:
Q  160 ttttgtgacaactttctctttcatatttacattataattttac 202  Q
    ||||||||||||||||||||||||| | |||||||| ||||||    
T  7287226 ttttgtgacaactttctctttcatactcacattatatttttac 7287184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 160 - 202
Target Start/End: Original strand, 16690534 - 16690576
Alignment:
Q  160 ttttgtgacaactttctctttcatatttacattataattttac 202  Q
    ||||||||||||||||||||||||| | |||||||| ||||||    
T  16690534 ttttgtgacaactttctctttcatactcacattatatttttac 16690576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 160 - 202
Target Start/End: Original strand, 26686916 - 26686958
Alignment:
Q  160 ttttgtgacaactttctctttcatatttacattataattttac 202  Q
    ||||||||||||||||||| ||||||| |||||||| ||||||    
T  26686916 ttttgtgacaactttctctctcatattcacattatatttttac 26686958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 160 - 202
Target Start/End: Original strand, 26956647 - 26956689
Alignment:
Q  160 ttttgtgacaactttctctttcatatttacattataattttac 202  Q
    ||||||||||||||||||| ||||||| |||||||| ||||||    
T  26956647 ttttgtgacaactttctctctcatattcacattatatttttac 26956689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 160 - 202
Target Start/End: Original strand, 35567535 - 35567577
Alignment:
Q  160 ttttgtgacaactttctctttcatatttacattataattttac 202  Q
    |||||||| |||||||||| |||||||||||||||| ||||||    
T  35567535 ttttgtgataactttctctctcatatttacattatatttttac 35567577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 184
Target Start/End: Complemental strand, 14508226 - 14508181
Alignment:
Q  139 gaaattatattcgtacaattattttgtgacaactttctctttcata 184  Q
    ||||| ||||| |||||| ||||||||||||||| |||||||||||    
T  14508226 gaaatgatatttgtacaactattttgtgacaactatctctttcata 14508181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 160 - 209
Target Start/End: Original strand, 23991265 - 23991314
Alignment:
Q  160 ttttgtgacaactttctctttcatatttacattataattttaccctctct 209  Q
    |||| |||||||||||||||||||| | |||||||| |||||| ||||||    
T  23991265 ttttttgacaactttctctttcatagtcacattatatttttactctctct 23991314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 213
Target Start/End: Complemental strand, 33626684 - 33626620
Alignment:
Q  151 gtacaattattttgtgacaactttctctttcatatttacattataatttta--ccctctcttcct 213  Q
    ||||| ||||||| |||||||||||||| ||||| | |||||||| |||||  ||||||||||||    
T  33626684 gtacatttattttttgacaactttctctctcatactcacattatatttttaatccctctcttcct 33626620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 160 - 209
Target Start/End: Complemental strand, 38293395 - 38293346
Alignment:
Q  160 ttttgtgacaactttctctttcatatttacattataattttaccctctct 209  Q
    ||||||||||||||||||| ||||| | |||||||| ||||||| |||||    
T  38293395 ttttgtgacaactttctctatcatactcacattatatttttaccttctct 38293346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 138 - 202
Target Start/End: Complemental strand, 20871069 - 20871005
Alignment:
Q  138 tgaaattatattcgtacaattattttgtgacaactttctctttcatatttacattataattttac 202  Q
    |||||| ||||| ||| |||| |||| ||| |||||| |||| ||||||||||||||| ||||||    
T  20871069 tgaaataatatttgtataattgttttatgataactttgtcttacatatttacattatatttttac 20871005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 10 - 46
Target Start/End: Original strand, 40584144 - 40584180
Alignment:
Q  10 aagaatatagaaagaaatgtatgtattgacacgaaaa 46  Q
    |||||||||||||||||||||||| | ||||||||||    
T  40584144 aagaatatagaaagaaatgtatgtctagacacgaaaa 40584180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 134 - 209
Target Start/End: Complemental strand, 3122337 - 3122262
Alignment:
Q  134 aaagtgaaattatattcgtacaattattttgtgacaactttctctttcatatttacattataattttaccctctct 209  Q
    |||||||||| ||||| |||||||||||| ||||||| ||||| | ||||| ||||||||| |||||| |||||||    
T  3122337 aaagtgaaatgatatttgtacaattatttagtgacaattttctttgtcatacttacattattattttatcctctct 3122262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 134 - 213
Target Start/End: Complemental strand, 8482295 - 8482216
Alignment:
Q  134 aaagtgaaattatattcgtacaattattttgtgacaactttctctttcatatttacattataattttaccctctcttcct 213  Q
    |||| ||||| ||||| ||||||  | ||| |||||||||||||| ||||||| |||||||| |||||||||||||||||    
T  8482295 aaagagaaatgatatttgtacaaccactttatgacaactttctctctcatattcacattatatttttaccctctcttcct 8482216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 159 - 201
Target Start/End: Complemental strand, 4237101 - 4237059
Alignment:
Q  159 attttgtgacaactttctctttcatatttacattataatttta 201  Q
    |||||||||||||||||||||||||| |||||||||| |||||    
T  4237101 attttgtgacaactttctctttcatacttacattatattttta 4237059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 160 - 194
Target Start/End: Original strand, 32869861 - 32869895
Alignment:
Q  160 ttttgtgacaactttctctttcatatttacattat 194  Q
    |||||||||||||||||||||||||||||||||||    
T  32869861 ttttgtgacaactttctctttcatatttacattat 32869895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 139 - 186
Target Start/End: Original strand, 1151530 - 1151577
Alignment:
Q  139 gaaattatattcgtacaattattttgtgacaactttctctttcatatt 186  Q
    ||||||||||| ||||||||||||||  |||||||| |||||||||||    
T  1151530 gaaattatatttgtacaattattttggtacaactttttctttcatatt 1151577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 160 - 202
Target Start/End: Original strand, 8427587 - 8427629
Alignment:
Q  160 ttttgtgacaactttctctttcatatttacattataattttac 202  Q
    ||||||||||||||||||| ||||| |||||||||| ||||||    
T  8427587 ttttgtgacaactttctctctcatacttacattatacttttac 8427629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 160 - 202
Target Start/End: Complemental strand, 18737910 - 18737868
Alignment:
Q  160 ttttgtgacaactttctctttcatatttacattataattttac 202  Q
    ||||||||||||||||||| ||||||| |||||||| ||||||    
T  18737910 ttttgtgacaactttctctctcatattcacattatatttttac 18737868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 160 - 193
Target Start/End: Original strand, 15269896 - 15269929
Alignment:
Q  160 ttttgtgacaactttctctttcatatttacatta 193  Q
    ||||||||||||||||||||||||||| ||||||    
T  15269896 ttttgtgacaactttctctttcatattcacatta 15269929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 145 - 194
Target Start/End: Original strand, 34215284 - 34215333
Alignment:
Q  145 atattcgtacaattattttgtgacaactttctctttcatatttacattat 194  Q
    ||||| ||||||||||||| |||||| ||||||| ||||||| |||||||    
T  34215284 atatttgtacaattattttttgacaattttctctctcatattcacattat 34215333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 184
Target Start/End: Complemental strand, 42607588 - 42607543
Alignment:
Q  139 gaaattatattcgtacaattattttgtgacaactttctctttcata 184  Q
    ||||| ||||| |||||||||||||||||||| ||||||| |||||    
T  42607588 gaaatgatatttgtacaattattttgtgacaattttctctctcata 42607543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 188
Target Start/End: Complemental strand, 44105160 - 44105111
Alignment:
Q  139 gaaattatattcgtacaattattttgtgacaactttctctttcatattta 188  Q
    |||||||||||  |||||| |||||||||||| ||||||| |||||||||    
T  44105160 gaaattatatttatacaatcattttgtgacaattttctctctcatattta 44105111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 159 - 195
Target Start/End: Complemental strand, 6511594 - 6511558
Alignment:
Q  159 attttgtgacaactttctctttcatatttacattata 195  Q
    |||||||||||| ||||||| ||||||||||||||||    
T  6511594 attttgtgacaattttctctctcatatttacattata 6511558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 134 - 186
Target Start/End: Original strand, 43097551 - 43097602
Alignment:
Q  134 aaagtgaaattatattcgtacaattattttgtgacaactttctctttcatatt 186  Q
    |||| ||||| ||||| |||||| ||||||||||||||||||| |||||||||    
T  43097551 aaagagaaatgatatt-gtacaactattttgtgacaactttctttttcatatt 43097602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 10 - 46
Target Start/End: Complemental strand, 44996680 - 44996644
Alignment:
Q  10 aagaatatagaaagaaatgtatgtattgacacgaaaa 46  Q
    |||||||||||||||||||||||| ||||||| ||||    
T  44996680 aagaatatagaaagaaatgtatgtcttgacacaaaaa 44996644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000009; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 139 - 203
Target Start/End: Complemental strand, 30112869 - 30112805
Alignment:
Q  139 gaaattatattcgtacaattattttgtgacaactttctctttcatatttacattataattttacc 203  Q
    ||||||||||| ||||||| ||||||||| |||||||||||||||||| |  ||||| |||||||    
T  30112869 gaaattatatttgtacaatcattttgtgataactttctctttcatattcatgttatatttttacc 30112805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 160 - 202
Target Start/End: Complemental strand, 37942943 - 37942901
Alignment:
Q  160 ttttgtgacaactttctctttcatatttacattataattttac 202  Q
    ||||||||||||||| |||||||||||||||||||| ||||||    
T  37942943 ttttgtgacaactttttctttcatatttacattatatttttac 37942901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 134 - 184
Target Start/End: Complemental strand, 40413412 - 40413362
Alignment:
Q  134 aaagtgaaattatattcgtacaattattttgtgacaactttctctttcata 184  Q
    |||| ||||| ||||| |||||||||||||||||||||||||||| |||||    
T  40413412 aaagagaaatgatatttgtacaattattttgtgacaactttctctctcata 40413362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 140 - 201
Target Start/End: Complemental strand, 14710950 - 14710889
Alignment:
Q  140 aaattatattcgtacaattattttgtgacaactttctctttcatatttacattataatttta 201  Q
    |||| ||||| ||||||| |||||||||||||||||||| ||||| | |||||||| |||||    
T  14710950 aaatgatatttgtacaatcattttgtgacaactttctctctcatactcacattatactttta 14710889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 46
Target Start/End: Original strand, 999196 - 999232
Alignment:
Q  10 aagaatatagaaagaaatgtatgtattgacacgaaaa 46  Q
    |||||||||||||||||||||||| ||||||||||||    
T  999196 aagaatatagaaagaaatgtatgtcttgacacgaaaa 999232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 46
Target Start/End: Complemental strand, 11584231 - 11584195
Alignment:
Q  10 aagaatatagaaagaaatgtatgtattgacacgaaaa 46  Q
    |||||||||||||||||||||||| ||||||||||||    
T  11584231 aagaatatagaaagaaatgtatgttttgacacgaaaa 11584195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 134 - 210
Target Start/End: Original strand, 29107992 - 29108068
Alignment:
Q  134 aaagtgaaattatattcgtacaattattttgtgacaactttctctttcatatttacattataattttaccctctctt 210  Q
    |||| ||||| ||||| ||||||| ||||| | |||||||||||||| ||| | |||||||| |||||||| |||||    
T  29107992 aaagagaaatgatatttgtacaatcattttttaacaactttctcttttatactcacattatatttttacccgctctt 29108068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 140 - 202
Target Start/End: Original strand, 157070 - 157132
Alignment:
Q  140 aaattatattcgtacaattattttgtgacaactttctctttcatatttacattataattttac 202  Q
    |||| ||||| ||||||  |||||| ||||||||||||| ||||| |||||||||| ||||||    
T  157070 aaatgatatttgtacaaccattttgcgacaactttctctctcatacttacattatatttttac 157132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 160 - 202
Target Start/End: Original strand, 45405566 - 45405608
Alignment:
Q  160 ttttgtgacaactttctctttcatatttacattataattttac 202  Q
    ||||||||||||||| ||||||||||| |||||||| ||||||    
T  45405566 ttttgtgacaactttttctttcatattcacattatatttttac 45405608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 140 - 184
Target Start/End: Original strand, 11138910 - 11138954
Alignment:
Q  140 aaattatattcgtacaattattttgtgacaactttctctttcata 184  Q
    |||| ||||| |||||| ||||||||||||||||||||| |||||    
T  11138910 aaatgatatttgtacaactattttgtgacaactttctctctcata 11138954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 166 - 243
Target Start/End: Complemental strand, 14548854 - 14548781
Alignment:
Q  166 gacaactttctctttcatatttacattataattttaccctctcttcctcattctcgacctctccattgttttttacca 243  Q
    ||||||||||||| ||||| | |||||||| | |||| ||||||||||  ||||    ||||||||||||||||||||    
T  14548854 gacaactttctctctcatactcacattatattcttactctctcttcctttttct----ctctccattgttttttacca 14548781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 139 - 210
Target Start/End: Original strand, 32644625 - 32644696
Alignment:
Q  139 gaaattatattcgtacaattattttgtgacaactttctctttcatatttacattataattttaccctctctt 210  Q
    ||||| ||||| |||||| |||||| |||||||||||||| ||||| | |||||||| |||||| |||||||    
T  32644625 gaaatgatatttgtacaactattttttgacaactttctctctcatactcacattatatttttactctctctt 32644696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 146 - 195
Target Start/End: Original strand, 12177586 - 12177635
Alignment:
Q  146 tattcgtacaattattttgtgacaactttctctttcatatttacattata 195  Q
    |||| |||||| ||||||||||||||||||||||||||| | ||||||||    
T  12177586 tatttgtacaactattttgtgacaactttctctttcatactcacattata 12177635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 166 - 243
Target Start/End: Original strand, 12044372 - 12044445
Alignment:
Q  166 gacaactttctctttcatatttacattataattttaccctctcttcctcattctcgacctctccattgttttttacca 243  Q
    ||||||||||||| ||||| | |||||||| |||||| ||||||||||  ||||    ||||||||||||||| ||||    
T  12044372 gacaactttctctctcatactcacattatatttttactctctcttcctttttct----ctctccattgtttttgacca 12044445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 139 - 194
Target Start/End: Original strand, 9753169 - 9753224
Alignment:
Q  139 gaaattatattcgtacaattattttgtgacaactttctctttcatatttacattat 194  Q
    ||||| ||||| |||||||||| || |||||||||||||||||||||| |||||||    
T  9753169 gaaatgatatttgtacaattatattttgacaactttctctttcatattcacattat 9753224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 160 - 202
Target Start/End: Original strand, 26550272 - 26550314
Alignment:
Q  160 ttttgtgacaactttctctttcatatttacattataattttac 202  Q
    ||||||||||||||||||| ||||||| |||||||||||||||    
T  26550272 ttttgtgacaactttctctctcatattcacattataattttac 26550314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 46
Target Start/End: Original strand, 5393770 - 5393806
Alignment:
Q  10 aagaatatagaaagaaatgtatgtattgacacgaaaa 46  Q
    |||||||||||||||||||||||| ||||||||||||    
T  5393770 aagaatatagaaagaaatgtatgtcttgacacgaaaa 5393806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 160 - 195
Target Start/End: Complemental strand, 19150355 - 19150320
Alignment:
Q  160 ttttgtgacaactttctctttcatatttacattata 195  Q
    ||||||||||||||||||| ||||||||||||||||    
T  19150355 ttttgtgacaactttctctctcatatttacattata 19150320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 160 - 194
Target Start/End: Complemental strand, 32924305 - 32924271
Alignment:
Q  160 ttttgtgacaactttctctttcatatttacattat 194  Q
    ||||||||||||||||||| |||||||||||||||    
T  32924305 ttttgtgacaactttctctctcatatttacattat 32924271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 176
Target Start/End: Complemental strand, 46966158 - 46966121
Alignment:
Q  139 gaaattatattcgtacaattattttgtgacaactttct 176  Q
    ||||| ||||||||||||||||||||| ||||||||||    
T  46966158 gaaataatattcgtacaattattttgtaacaactttct 46966121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 139 - 191
Target Start/End: Complemental strand, 11056980 - 11056928
Alignment:
Q  139 gaaattatattcgtacaattattttgtgacaactttctctttcatatttacat 191  Q
    ||||| ||||| ||||||  ||||| |||||||||||||||||||||| ||||    
T  11056980 gaaatgatatttgtacaacaattttttgacaactttctctttcatattcacat 11056928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 10 - 46
Target Start/End: Complemental strand, 48309978 - 48309942
Alignment:
Q  10 aagaatatagaaagaaatgtatgtattgacacgaaaa 46  Q
    ||||||||| |||||||||||||| ||||||||||||    
T  48309978 aagaatataaaaagaaatgtatgtcttgacacgaaaa 48309942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 159 - 195
Target Start/End: Complemental strand, 52678615 - 52678579
Alignment:
Q  159 attttgtgacaactttctctttcatatttacattata 195  Q
    ||||| |||||||||||||||||||||| ||||||||    
T  52678615 attttttgacaactttctctttcatattcacattata 52678579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 139 - 209
Target Start/End: Complemental strand, 28676210 - 28676140
Alignment:
Q  139 gaaattatattcgtacaattattttgtgacaactttctctttcatatttacattataattttaccctctct 209  Q
    ||||| ||||| ||||||  |||||||||||||||||||||||||| | |||||||| | |||| ||||||    
T  28676210 gaaatgatatttgtacaaccattttgtgacaactttctctttcatactcacattatattcttactctctct 28676140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 139 - 181
Target Start/End: Complemental strand, 41262687 - 41262645
Alignment:
Q  139 gaaattatattcgtacaattattttgtgacaactttctctttc 181  Q
    ||||| ||||| |||||||||||||||||||||||||||||||    
T  41262687 gaaatgatatttgtacaattattttgtgacaactttctctttc 41262645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 160 - 209
Target Start/End: Original strand, 37060352 - 37060401
Alignment:
Q  160 ttttgtgacaactttctctttcatatttacattataattttaccctctct 209  Q
    ||||||||||||||||||| ||||||| |||||||| ||||||| |||||    
T  37060352 ttttgtgacaactttctctctcatattcacattatatttttaccttctct 37060401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 139 - 202
Target Start/End: Complemental strand, 12387723 - 12387660
Alignment:
Q  139 gaaattatattcgtacaattattttgtgacaactttctctttcatatttacattataattttac 202  Q
    ||||| ||||| ||||||| ||||| ||||||||||||| |||||| | |||||||| ||||||    
T  12387723 gaaatgatatttgtacaatcattttttgacaactttctccttcataatcacattatatttttac 12387660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 166 - 209
Target Start/End: Original strand, 23094416 - 23094459
Alignment:
Q  166 gacaactttctctttcatatttacattataattttaccctctct 209  Q
    |||||||||||||||||||||||||||||| | |||| ||||||    
T  23094416 gacaactttctctttcatatttacattatattcttactctctct 23094459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 139 - 194
Target Start/End: Complemental strand, 50608681 - 50608627
Alignment:
Q  139 gaaattatattcgtacaattattttgtgacaactttctctttcatatttacattat 194  Q
    ||||||||||| | ||||||||||| |||||||||||||||||||| | |||||||    
T  50608681 gaaattatatttgaacaattatttt-tgacaactttctctttcatactcacattat 50608627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 139 - 201
Target Start/End: Complemental strand, 32464673 - 32464611
Alignment:
Q  139 gaaattatattcgtacaattattttgtgacaactttctctttcatatttacattataatttta 201  Q
    ||||| ||||| |||||| |||||| ||| || ||||||||||||| |||||||||| |||||    
T  32464673 gaaatgatatttgtacaactattttatgataattttctctttcatacttacattatattttta 32464611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 10 - 46
Target Start/End: Complemental strand, 8810706 - 8810670
Alignment:
Q  10 aagaatatagaaagaaatgtatgtattgacacgaaaa 46  Q
    |||||||||||||||||||||| | ||||||||||||    
T  8810706 aagaatatagaaagaaatgtatatcttgacacgaaaa 8810670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 139 - 195
Target Start/End: Complemental strand, 28899273 - 28899217
Alignment:
Q  139 gaaattatattcgtacaattattttgtgacaactttctctttcatatttacattata 195  Q
    ||||| ||||| ||||||| ||||||  |||||||||||| ||||||| ||||||||    
T  28899273 gaaatgatatttgtacaatcattttggtacaactttctctctcatattcacattata 28899217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 140 - 184
Target Start/End: Complemental strand, 29974384 - 29974340
Alignment:
Q  140 aaattatattcgtacaattattttgtgacaactttctctttcata 184  Q
    |||| ||||| | |||| |||||||||||||||||||||||||||    
T  29974384 aaatgatatttgaacaactattttgtgacaactttctctttcata 29974340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 139 - 191
Target Start/End: Complemental strand, 32365725 - 32365673
Alignment:
Q  139 gaaattatattcgtacaattattttgtgacaactttctctttcatatttacat 191  Q
    ||||| ||||| ||||||  |||||||||||||||||||| ||||||| ||||    
T  32365725 gaaatgatatttgtacaaccattttgtgacaactttctctctcatattcacat 32365673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 139 - 195
Target Start/End: Complemental strand, 33093173 - 33093117
Alignment:
Q  139 gaaattatattcgtacaattattttgtgacaactttctctttcatatttacattata 195  Q
    ||||| ||||| |||||| ||||||||||||||||||| ||||| | | ||||||||    
T  33093173 gaaatgatatttgtacaactattttgtgacaactttctttttcacactcacattata 33093117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 139 - 215
Target Start/End: Original strand, 37731928 - 37732004
Alignment:
Q  139 gaaattatattcgtacaattattttgtgacaactttctctttcatatttacattataattttaccctctcttcctca 215  Q
    ||||| ||||| ||||||| ||||||  |||||||||||| ||||| | |||||||  |||||  ||||||||||||    
T  37731928 gaaatgatatttgtacaatcattttggtacaactttctctctcatactcacattatgtttttattctctcttcctca 37732004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 134 - 174
Target Start/End: Complemental strand, 38864810 - 38864770
Alignment:
Q  134 aaagtgaaattatattcgtacaattattttgtgacaacttt 174  Q
    |||| ||||| ||||| ||||||||||||||||||||||||    
T  38864810 aaagagaaatgatatttgtacaattattttgtgacaacttt 38864770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 159 - 207
Target Start/End: Complemental strand, 45761282 - 45761234
Alignment:
Q  159 attttgtgacaactttctctttcatatttacattataattttaccctct 207  Q
    |||||||||||||||||||| ||||||| | |||||| |||||| ||||    
T  45761282 attttgtgacaactttctctctcatattcatattatatttttactctct 45761234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 158 - 194
Target Start/End: Original strand, 48569291 - 48569327
Alignment:
Q  158 tattttgtgacaactttctctttcatatttacattat 194  Q
    |||||| |||||||||||||||||||||||| |||||    
T  48569291 tattttatgacaactttctctttcatatttatattat 48569327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 139 - 184
Target Start/End: Complemental strand, 24044805 - 24044760
Alignment:
Q  139 gaaattatattcgtacaattattttgtgacaactttctctttcata 184  Q
    ||||| ||||| |||||||||||||||||||||| |||||||||||    
T  24044805 gaaatgatatttgtacaattattttgtgacaactctctctttcata 24044760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 158 - 209
Target Start/End: Original strand, 23170159 - 23170210
Alignment:
Q  158 tattttgtgacaactttctctttcatatttacattataattttaccctctct 209  Q
    |||||||||| |||||||||| | |||||||||||||  |||||||||||||    
T  23170159 tattttgtgataactttctctcttatatttacattatttttttaccctctct 23170210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 139 - 202
Target Start/End: Complemental strand, 45420118 - 45420055
Alignment:
Q  139 gaaattatattcgtacaattattttgtgacaactttctctttcatatttacattataattttac 202  Q
    ||||| ||||| | |||| |||||| |||||||||||||| ||||||| ||||||| |||||||    
T  45420118 gaaatgatatttgaacaactattttttgacaactttctctctcatattcacattatcattttac 45420055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 140 - 174
Target Start/End: Complemental strand, 11751208 - 11751174
Alignment:
Q  140 aaattatattcgtacaattattttgtgacaacttt 174  Q
    |||||||||| ||||||||||||||||||||||||    
T  11751208 aaattatatttgtacaattattttgtgacaacttt 11751174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 134 - 184
Target Start/End: Original strand, 26041318 - 26041368
Alignment:
Q  134 aaagtgaaattatattcgtacaattattttgtgacaactttctctttcata 184  Q
    |||| ||||| ||||||||||||  ||||| ||||||||||||||||||||    
T  26041318 aaagagaaatgatattcgtacaaccattttatgacaactttctctttcata 26041368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 160 - 202
Target Start/End: Complemental strand, 33578351 - 33578309
Alignment:
Q  160 ttttgtgacaactttctctttcatatttacattataattttac 202  Q
    |||| |||||||||||| |||||||||||||||||| ||||||    
T  33578351 ttttatgacaactttctttttcatatttacattatatttttac 33578309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 160 - 202
Target Start/End: Complemental strand, 47954138 - 47954096
Alignment:
Q  160 ttttgtgacaactttctctttcatatttacattataattttac 202  Q
    ||||||||||||||||||||||||| | |||||||| ||||||    
T  47954138 ttttgtgacaactttctctttcatactcacattatatttttac 47954096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 46
Target Start/End: Original strand, 24680908 - 24680941
Alignment:
Q  13 aatatagaaagaaatgtatgtattgacacgaaaa 46  Q
    ||||||||||||||||||||| ||||||||||||    
T  24680908 aatatagaaagaaatgtatgtcttgacacgaaaa 24680941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 140 - 184
Target Start/End: Complemental strand, 23680095 - 23680051
Alignment:
Q  140 aaattatattcgtacaattattttgtgacaactttctctttcata 184  Q
    |||| ||||| |||||| ||||||||||||||||||| |||||||    
T  23680095 aaatgatatttgtacaactattttgtgacaactttctttttcata 23680051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 134 - 194
Target Start/End: Complemental strand, 34992398 - 34992338
Alignment:
Q  134 aaagtgaaattatattcgtacaattattttgtgacaactttctctttcatatttacattat 194  Q
    |||| ||||| ||||| ||||||  ||||| |||||||| ||||||||||| |||||||||    
T  34992398 aaagagaaatgatatttgtacaaccattttatgacaactctctctttcatacttacattat 34992338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 139 - 191
Target Start/End: Complemental strand, 49025372 - 49025320
Alignment:
Q  139 gaaattatattcgtacaattattttgtgacaactttctctttcatatttacat 191  Q
    ||||| ||||| ||||||||||||| ||||||||||||||  |||| ||||||    
T  49025372 gaaatgatatttgtacaattattttatgacaactttctctgacatacttacat 49025320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 46
Target Start/End: Complemental strand, 35848545 - 35848509
Alignment:
Q  10 aagaatatagaaagaaatgtatgtattgacacgaaaa 46  Q
    |||||||||||||||||||||||| ||||||||||||    
T  35848545 aagaatatagaaagaaatgtatgtcttgacacgaaaa 35848509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 134 - 243
Target Start/End: Complemental strand, 43612143 - 43612038
Alignment:
Q  134 aaagtgaaattatattcgtacaattattttgtgacaactttctctttcatatttacattataattttaccctctcttcctcattctcgacctctccattg 233  Q
    |||| ||||| ||||| ||||||  ||||| |||||||||||||| |||||  ||||||||| | |||| ||||||||||  ||||    ||||||||||    
T  43612143 aaagagaaatgatatttgtacaaccattttatgacaactttctctctcatacatacattatattcttactctctcttcctttttct----ctctccattg 43612048  T
Q  234 ttttttacca 243  Q
    ||||| ||||    
T  43612047 tttttgacca 43612038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 153 - 201
Target Start/End: Complemental strand, 52513011 - 52512963
Alignment:
Q  153 acaattattttgtgacaactttctctttcatatttacattataatttta 201  Q
    |||||||||||  ||||||||||| |||||||||||||||||| |||||    
T  52513011 acaattattttacgacaactttctatttcatatttacattatattttta 52512963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 134 - 209
Target Start/End: Complemental strand, 40596117 - 40596042
Alignment:
Q  134 aaagtgaaattatattcgtacaattattttgtgacaactttctctttcatatttacattataattttaccctctct 209  Q
    |||| ||||| ||||| ||||||  |||||||||||||||||||| ||||| | |||||||| | |||| ||||||    
T  40596117 aaagagaaatgatatttgtacaaccattttgtgacaactttctctctcatactcacattatattcttactctctct 40596042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 159 - 193
Target Start/End: Complemental strand, 8828160 - 8828126
Alignment:
Q  159 attttgtgacaactttctctttcatatttacatta 193  Q
    |||||||||||||||||||| ||||||||||||||    
T  8828160 attttgtgacaactttctctctcatatttacatta 8828126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 160 - 202
Target Start/End: Original strand, 9987986 - 9988028
Alignment:
Q  160 ttttgtgacaactttctctttcatatttacattataattttac 202  Q
    ||||||||||||||||||||||||| | |||||||| ||||||    
T  9987986 ttttgtgacaactttctctttcatactcacattatatttttac 9988028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 160 - 202
Target Start/End: Original strand, 42468627 - 42468669
Alignment:
Q  160 ttttgtgacaactttctctttcatatttacattataattttac 202  Q
    ||||||||||||||||||| ||||| ||||||||| |||||||    
T  42468627 ttttgtgacaactttctctctcatacttacattattattttac 42468669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 160 - 202
Target Start/End: Complemental strand, 49446834 - 49446792
Alignment:
Q  160 ttttgtgacaactttctctttcatatttacattataattttac 202  Q
    ||||||||||||||||||| ||||| |||||||||| ||||||    
T  49446834 ttttgtgacaactttctctctcatacttacattatatttttac 49446792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 160 - 194
Target Start/End: Complemental strand, 49559235 - 49559201
Alignment:
Q  160 ttttgtgacaactttctctttcatatttacattat 194  Q
    ||||||||||||||||||| |||||||||||||||    
T  49559235 ttttgtgacaactttctctctcatatttacattat 49559201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 160 - 202
Target Start/End: Original strand, 49570031 - 49570073
Alignment:
Q  160 ttttgtgacaactttctctttcatatttacattataattttac 202  Q
    ||||||||||||||||||| ||||||| |||||||| ||||||    
T  49570031 ttttgtgacaactttctctctcatattcacattatatttttac 49570073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 160 - 202
Target Start/End: Original strand, 49931588 - 49931630
Alignment:
Q  160 ttttgtgacaactttctctttcatatttacattataattttac 202  Q
    ||||||||||||||||||| ||||||| |||||||| ||||||    
T  49931588 ttttgtgacaactttctctctcatattcacattatatttttac 49931630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 134 - 184
Target Start/End: Original strand, 50797788 - 50797838
Alignment:
Q  134 aaagtgaaattatattcgtacaattattttgtgacaactttctctttcata 184  Q
    |||| ||||| ||||| ||||||| |||||||||||||||||||| |||||    
T  50797788 aaagagaaatgatatttgtacaatcattttgtgacaactttctctctcata 50797838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 133 - 174
Target Start/End: Complemental strand, 8934671 - 8934630
Alignment:
Q  133 caaagtgaaattatattcgtacaattattttgtgacaacttt 174  Q
    ||||| ||||||||||| |||||| |||||||||||||||||    
T  8934671 caaagagaaattatatttgtacaactattttgtgacaacttt 8934630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 160 - 201
Target Start/End: Complemental strand, 32831203 - 32831163
Alignment:
Q  160 ttttgtgacaactttctctttcatatttacattataatttta 201  Q
    |||||||| ||||||||||||||||||||||||||| |||||    
T  32831203 ttttgtga-aactttctctttcatatttacattatattttta 32831163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 202
Target Start/End: Original strand, 32960384 - 32960425
Alignment:
Q  161 tttgtgacaactttctctttcatatttacattataattttac 202  Q
    |||||||||||||||||| ||||||| |||||||| ||||||    
T  32960384 tttgtgacaactttctctctcatattcacattatatttttac 32960425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 145 - 194
Target Start/End: Complemental strand, 37742004 - 37741955
Alignment:
Q  145 atattcgtacaattattttgtgacaactttctctttcatatttacattat 194  Q
    ||||| ||||||| ||||||  |||||||||||||||||| |||||||||    
T  37742004 atatttgtacaatcattttgatacaactttctctttcatacttacattat 37741955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 46
Target Start/End: Original strand, 38965449 - 38965482
Alignment:
Q  13 aatatagaaagaaatgtatgtattgacacgaaaa 46  Q
    ||||||||||||||||||| ||||||||||||||    
T  38965449 aatatagaaagaaatgtatctattgacacgaaaa 38965482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0178 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0178
Description:

Target: scaffold0178; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 160 - 194
Target Start/End: Original strand, 9811 - 9845
Alignment:
Q  160 ttttgtgacaactttctctttcatatttacattat 194  Q
    ||||||||||||||||||||||||| |||||||||    
T  9811 ttttgtgacaactttctctttcatacttacattat 9845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0128 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0128
Description:

Target: scaffold0128; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 160 - 209
Target Start/End: Original strand, 10971 - 11020
Alignment:
Q  160 ttttgtgacaactttctctttcatatttacattataattttaccctctct 209  Q
    ||||||||||||||||||| ||||| | ||||||| ||||||| ||||||    
T  10971 ttttgtgacaactttctctctcatactcacattatcattttactctctct 11020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0449 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0449
Description:

Target: scaffold0449; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 159 - 195
Target Start/End: Original strand, 7881 - 7917
Alignment:
Q  159 attttgtgacaactttctctttcatatttacattata 195  Q
    |||||||||||||||||||||| ||||||| ||||||    
T  7881 attttgtgacaactttctcttttatatttatattata 7917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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