View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3471_low_19 (Length: 363)

Name: NF3471_low_19
Description: NF3471
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3471_low_19
NF3471_low_19
[»] chr3 (7 HSPs)
chr3 (19-294)||(6942494-6942776)
chr3 (19-292)||(6787945-6788229)
chr3 (93-294)||(6939399-6939601)
chr3 (102-213)||(8467036-8467147)
chr3 (291-357)||(6942806-6942874)
chr3 (291-357)||(6939631-6939699)
chr3 (103-154)||(41035956-41036007)
[»] chr8 (2 HSPs)
chr8 (99-194)||(5354180-5354275)
chr8 (98-160)||(5508953-5509015)
[»] chr1 (2 HSPs)
chr1 (99-152)||(34564857-34564910)
chr1 (99-147)||(30526203-30526251)
[»] chr5 (1 HSPs)
chr5 (95-173)||(28362656-28362734)
[»] chr2 (1 HSPs)
chr2 (104-200)||(33720155-33720255)
[»] chr4 (1 HSPs)
chr4 (107-193)||(48681542-48681628)


Alignment Details
Target: chr3 (Bit Score: 166; Significance: 9e-89; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 166; E-Value: 9e-89
Query Start/End: Original strand, 19 - 294
Target Start/End: Original strand, 6942494 - 6942776
Alignment:
Q  19 aacatggcatgtcgcccataagtatgttagaacagcaaacccgttcaaaaatcaaaagattaaagaaaaagtaaa------taatgaacacacgatgttt 112  Q
    ||||||||||||  ||||||||||||||||||||||||||  ||||||||||||||| |||||||||| ||||||      |||||||||||||||||||    
T  6942494 aacatggcatgttacccataagtatgttagaacagcaaactggttcaaaaatcaaaaaattaaagaaacagtaaacgcaaataatgaacacacgatgttt 6942593  T
Q  113 ggtaacgaaattcggccaatattgcctacgtctccgactgcaaagcagctgctgttcctttttatcatgagtgaaagattaaggtttacaatgcacaact 212  Q
    ||||||||| ||| |||||||||||||||||||||||||||| ||||||||| |||||||||||| ||||| |||||| ||| |||||||||||||||||    
T  6942594 ggtaacgaagttcagccaatattgcctacgtctccgactgcagagcagctgcagttcctttttattatgagagaaagagtaatgtttacaatgcacaact 6942693  T
Q  213 tgtgcataaacgc--ttgtccagattacaacatcacccctgaaccgtaccccccagtcgccatcacacaacaaactatgatacc 294  Q
    |||| |||||| |  |||||||||||||||||||| |||||||||||| ||||||||||||||||  |||||||||||||||||    
T  6942694 tgtgtataaacactattgtccagattacaacatcaaccctgaaccgta-cccccagtcgccatcatgcaacaaactatgatacc 6942776  T

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Target: chr3; HSP #2
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 19 - 292
Target Start/End: Complemental strand, 6788229 - 6787945
Alignment:
Q  19 aacatggcatgtcgcccataagtatgttagaacagcaaacccgttcaaaaatcaaaagattaaagaaaaagtaaa------taatgaacacacgatgttt 112  Q
    |||||| || || |||||||||||||||||| |||||||||||||||||||||||||||| ||||| ||||||||      |||| ||||||||||||||    
T  6788229 aacatgtcacgttgcccataagtatgttagatcagcaaacccgttcaaaaatcaaaagataaaagacaaagtaaacgcaaataataaacacacgatgttt 6788130  T
Q  113 ggtaacgaaattcggccaatattgcctacgtctccgactgcaaagcagctgctgttcctttttatcatgagtgaaagattaaggtttacaatgcacaact 212  Q
    ||||||||| ||||||||||||||||||| |||||||||||| || |||||| |||||||||||| ||||||||||||||||||||||||||||||||||    
T  6788129 ggtaacgaagttcggccaatattgcctacatctccgactgcagagaagctgcagttcctttttattatgagtgaaagattaaggtttacaatgcacaact 6788030  T
Q  213 tgtgcataa------acgcttgtccagattacaacatcacccctgaaccgtaccccccagtcgccatcacacaacaaactatgata 292  Q
    |||| ||||      ||  |||||||||||||||||||||||||||||| || |||||||||||||| ||||||||||||||||||    
T  6788029 tgtgtataattaaacactattgtccagattacaacatcacccctgaaccata-cccccagtcgccattacacaacaaactatgata 6787945  T

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Target: chr3; HSP #3
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 93 - 294
Target Start/End: Original strand, 6939399 - 6939601
Alignment:
Q  93 ataatgaacacacgatgtttggtaacgaaattcggccaatattgcctacgtctccgactgcaaagcagctgctgttcctttttatcatgagtgaaagatt 192  Q
    ||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| ||||||||| |||||||||||| ||||| |||||| |    
T  6939399 ataatgaacacacgatgtttggtaacgaagttcagccaatattgcctacgtctccgactgcagagcagctgcagttcctttttattatgagagaaagagt 6939498  T
Q  193 aaggtttacaatgcacaacttgtgcat--aaacgcttgtccagattacaacatcacccctgaaccgtaccccccagtcgccatcacacaacaaactatga 290  Q
    || |||||||||||||||| |||| ||  ||||  |||||||||||||||||||| || ||||||||| ||||||||||||||||| |||||||||||||    
T  6939499 aatgtttacaatgcacaacgtgtgtataaaaactattgtccagattacaacatcaaccgtgaaccgta-cccccagtcgccatcacgcaacaaactatga 6939597  T
Q  291 tacc 294  Q
    ||||    
T  6939598 tacc 6939601  T

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Target: chr3; HSP #4
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 102 - 213
Target Start/End: Original strand, 8467036 - 8467147
Alignment:
Q  102 acacgatgtttggtaacgaaattcggccaatattgcctacgtctccgactgcaaagcagctgctgttcctttttatcatgagtgaaagattaaggtttac 201  Q
    |||| ||||||||||||||| |||||||||||||||||||||||||||||| | || |||||| |||||||| ||| || | |||||||||| |||||||    
T  8467036 acacaatgtttggtaacgaagttcggccaatattgcctacgtctccgactgtagagaagctgcagttcctttgtattatcaatgaaagattagggtttac 8467135  T
Q  202 aatgcacaactt 213  Q
    | ||||||||||    
T  8467136 agtgcacaactt 8467147  T

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Target: chr3; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 291 - 357
Target Start/End: Original strand, 6942806 - 6942874
Alignment:
Q  291 taccctctttgaactttgaatgttt--ctttatcatcatctactgatctttcctccgattcttatcact 357  Q
    ||||||||||||||||||||| |||  ||||||||||||||||| ||||||||||| ||||||||||||    
T  6942806 taccctctttgaactttgaatttttttctttatcatcatctactcatctttcctccaattcttatcact 6942874  T

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Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 291 - 357
Target Start/End: Original strand, 6939631 - 6939699
Alignment:
Q  291 taccctctttgaactttgaatgttt--ctttatcatcatctactgatctttcctccgattcttatcact 357  Q
    ||||||||||||||||||||| |||  ||||||||||||||||| || |||||||| ||||||||||||    
T  6939631 taccctctttgaactttgaatttttttctttatcatcatctactcatatttcctccaattcttatcact 6939699  T

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Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 103 - 154
Target Start/End: Original strand, 41035956 - 41036007
Alignment:
Q  103 cacgatgtttggtaacgaaattcggccaatattgcctacgtctccgactgca 154  Q
    |||||||||||||||||||||||| |||||  |||||||||||| |||||||    
T  41035956 cacgatgtttggtaacgaaattcgtccaattgtgcctacgtctcagactgca 41036007  T

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Target: chr8 (Bit Score: 44; Significance: 6e-16; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 99 - 194
Target Start/End: Original strand, 5354180 - 5354275
Alignment:
Q  99 aacacacgatgtttggtaacgaaattcggccaatattgcctacgtctccgactgcaaagcagctgctgttcctttttatcatgagtgaaagattaa 194  Q
    ||||||| ||||||||||||||| |||||||||| |||||||| |||| |||| |||||||||||  |||||||| ||| ||  |||||| |||||    
T  5354180 aacacacaatgtttggtaacgaagttcggccaattttgcctacttctctgactacaaagcagctgtagttcctttgtattatcggtgaaaaattaa 5354275  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 98 - 160
Target Start/End: Original strand, 5508953 - 5509015
Alignment:
Q  98 gaacacacgatgtttggtaacgaaattcggccaatattgcctacgtctccgactgcaaagcag 160  Q
    |||||||| ||| ||||||||||||||| |||||| ||||||||  |||| |||||| |||||    
T  5508953 gaacacacaatgcttggtaacgaaattcagccaattttgcctacacctccaactgcagagcag 5509015  T

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Target: chr1 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 99 - 152
Target Start/End: Complemental strand, 34564910 - 34564857
Alignment:
Q  99 aacacacgatgtttggtaacgaaattcggccaatattgcctacgtctccgactg 152  Q
    ||||||||||||||||||||||| |||||||||  |||||||||||||||||||    
T  34564910 aacacacgatgtttggtaacgaagttcggccaaatttgcctacgtctccgactg 34564857  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 99 - 147
Target Start/End: Original strand, 30526203 - 30526251
Alignment:
Q  99 aacacacgatgtttggtaacgaaattcggccaatattgcctacgtctcc 147  Q
    ||||||||||||||||||||||| || | |||||  |||||||||||||    
T  30526203 aacacacgatgtttggtaacgaagtttgaccaattgtgcctacgtctcc 30526251  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 95 - 173
Target Start/End: Complemental strand, 28362734 - 28362656
Alignment:
Q  95 aatgaacacacgatgtttggtaacgaaattcggccaatattgcctacgtctccgactgcaaagcagctgctgttccttt 173  Q
    |||||||||||||||||||||||| || ||   ||||| ||||||| ||||| ||||||| ||||||||| ||||||||    
T  28362734 aatgaacacacgatgtttggtaacaaagtttaaccaattttgcctatgtctcagactgcagagcagctgcagttccttt 28362656  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 104 - 200
Target Start/End: Complemental strand, 33720255 - 33720155
Alignment:
Q  104 acgatgtttggtaacgaaattcggccaatattgcctacgtctccgactgca----aagcagctgctgttcctttttatcatgagtgaaagattaaggttt 199  Q
    |||||||||| ||||||| |||||||||| |||||||| ||||||||||||     ||||||||| |||||||| ||| ||  ||||||| ||| |||||    
T  33720255 acgatgtttgataacgaagttcggccaattttgcctacatctccgactgcagagcgagcagctgcagttcctttctattatctgtgaaagtttagggttt 33720156  T
Q  200 a 200  Q
    |    
T  33720155 a 33720155  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 107 - 193
Target Start/End: Complemental strand, 48681628 - 48681542
Alignment:
Q  107 atgtttggtaacgaaattcggccaatattgcctacgtctccgactgcaaagcagctgctgttcctttttatcatgagtgaaagatta 193  Q
    ||||||||||| ||| |||||||||| ||| || ||||||||| |||| ||  ||||| |||||||| ||| || |||| |||||||    
T  48681628 atgtttggtaatgaagttcggccaattttgtctgcgtctccgaatgcagagtggctgcagttcctttatattatcagtggaagatta 48681542  T

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