View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3471_low_20 (Length: 354)
Name: NF3471_low_20
Description: NF3471
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3471_low_20 |
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Alignment Details
Target: chr3 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 17 - 332
Target Start/End: Original strand, 49511767 - 49512081
Alignment:
| Q |
17 |
aatataagtacactttgtgtgatgacaaattcattggaaaaaggattttaataaatatgataacaattttaaaattgagaagcttaagtcaatctactta |
116 |
Q |
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| T |
49511767 |
aatataagtacactttgtgtgatgacaaattcattggaaaaaggattttaataaatatgataacaattttaaaattgagaagcttaagtcaatctactta |
49511866 |
T |
|
| Q |
117 |
aaacgaaattggaaaattaacatagagacagtgttgtgattaagggcaccttgttgcagagatcgaaattgcatccggcaagagtttgtagtgtatcgac |
216 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49511867 |
aaacgaaattggaaaattaacatagagaca-tgttgtgattaagggcaccttgttgcagagatcgaaattgcatccggcaagagtttgtagtgtatcgac |
49511965 |
T |
|
| Q |
217 |
ctcatatatagtcacatcgagcttcccgtgtagtaagtgcaacatgacgttatatatagtttatgtttcttttccccttgctttgtgcaatcaaaacaag |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
49511966 |
ctcatatatagtcacatcgagcttcccgtgtagtaagtgcaacatgacgttatatatagtttatgtttcttttacccttgctttgtgcaatcaaaacaag |
49512065 |
T |
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| Q |
317 |
tgtcatacatatatga |
332 |
Q |
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|||||||||||||||| |
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| T |
49512066 |
tgtcatacatatatga |
49512081 |
T |
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