View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3471_low_21 (Length: 352)

Name: NF3471_low_21
Description: NF3471
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3471_low_21
NF3471_low_21
[»] chr1 (12 HSPs)
chr1 (3-334)||(3446873-3447198)
chr1 (170-334)||(10163115-10163279)
chr1 (172-333)||(3448617-3448778)
chr1 (170-333)||(11672174-11672335)
chr1 (170-333)||(11670495-11670658)
chr1 (172-270)||(11673630-11673727)
chr1 (170-308)||(36814379-36814516)
chr1 (182-333)||(4032717-4032871)
chr1 (183-333)||(10833720-10833868)
chr1 (225-308)||(13993396-13993479)
chr1 (289-329)||(36817939-36817979)
chr1 (95-155)||(11672102-11672162)
[»] chr2 (6 HSPs)
chr2 (170-333)||(17323130-17323291)
chr2 (170-333)||(29171122-29171288)
chr2 (183-333)||(41973936-41974088)
chr2 (172-333)||(35549466-35549627)
chr2 (172-270)||(14392011-14392108)
chr2 (170-226)||(5816787-5816843)
[»] chr5 (6 HSPs)
chr5 (170-334)||(36070441-36070605)
chr5 (172-262)||(33625392-33625482)
chr5 (183-275)||(40880522-40880614)
chr5 (172-262)||(33623105-33623195)
chr5 (173-236)||(13860405-13860468)
chr5 (183-226)||(18024838-18024881)
[»] chr6 (7 HSPs)
chr6 (190-332)||(7295376-7295516)
chr6 (172-303)||(1515165-1515296)
chr6 (172-333)||(1520047-1520206)
chr6 (172-240)||(2512252-2512320)
chr6 (178-333)||(7300358-7300514)
chr6 (172-303)||(1515869-1515998)
chr6 (172-303)||(1517960-1518089)
[»] chr7 (5 HSPs)
chr7 (172-333)||(22130091-22130252)
chr7 (172-333)||(40500854-40501015)
chr7 (95-275)||(41400788-41400965)
chr7 (181-226)||(33542073-33542118)
chr7 (170-215)||(48013261-48013306)
[»] chr4 (3 HSPs)
chr4 (172-333)||(3070963-3071124)
chr4 (194-333)||(49058463-49058603)
chr4 (250-334)||(22497567-22497651)
[»] chr8 (4 HSPs)
chr8 (173-307)||(13014328-13014462)
chr8 (172-240)||(38063850-38063918)
chr8 (189-307)||(13012630-13012748)
chr8 (176-226)||(21240551-21240601)
[»] chr3 (2 HSPs)
chr3 (170-242)||(3956552-3956624)
chr3 (189-229)||(34618618-34618658)


Alignment Details
Target: chr1 (Bit Score: 216; Significance: 1e-118; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 3 - 334
Target Start/End: Original strand, 3446873 - 3447198
Alignment:
Q  3 ttttctcccatgattaataatgtcaatttttgttgtacattaaggctacacaattgagatactctcatggccagcccaatatatannnnnnngcctaaag 102  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | |||||||||||        ||||||||    
T  3446873 ttttctcccatgattaataatgtcaatttttgttgtacattaaggctacacaattgcgatactctcatggacggcccaatatat--ttttatgcctaaag 3446970  T
Q  103 cgaaatttgaatagaagcctttcaagtgtgtttaaagagaataagataaaattnnnnnnnnnnnnnntccataagttttctcaatggaaagtaattttat 202  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||              |||||||||||| || ||| |||||||||||||    
T  3446971 cgaaatttgaatagaagcctttcaagtgtgtttaaagagaataagacaaaattaaaaaaaaaa----tccataagttttttcgatgaaaagtaattttat 3447066  T
Q  203 atgatgtgtgtcagacactaaataaatatgagtattttgttcgctaaaaatcaaattttgatttgtcagattgcacgattacatcctctttcgctataat 302  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||    
T  3447067 atgatgtgtgtcagacactaaataaatatgagtattttgttcgctaaaaatcaaattttgatttgtcagattatacgattacatcctctttcgctataat 3447166  T
Q  303 caactttcttaatgcgtgacctttttaatatg 334  Q
    ||||||||||| ||||||||||||||||||||    
T  3447167 caactttcttagtgcgtgacctttttaatatg 3447198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 170 - 334
Target Start/End: Complemental strand, 10163279 - 10163115
Alignment:
Q  170 tccataagttttctcaatggaaagtaattttatatgatgtgtgtcagacactaaataaatatgagtattttgttcgctaaaaatcaaattttgatttgtc 269  Q
    ||||||||||  |||||| |||||||||| |||||||||||| ||||||||||| ||||||||||||||||||  |||| |||||||| |||| ||||||    
T  10163279 tccataagttccctcaatcgaaagtaattctatatgatgtgtatcagacactaattaaatatgagtattttgtcagctagaaatcaaactttggtttgtc 10163180  T
Q  270 agattgcacgattacatcctctttcgctataatcaactttcttaatgcgtgacctttttaatatg 334  Q
    | ||||   || || |||||||||||||||||||||||   ||| |||||||||||| |||||||    
T  10163179 acattgtgagagtatatcctctttcgctataatcaactccgttagtgcgtgacctttataatatg 10163115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 172 - 333
Target Start/End: Original strand, 3448617 - 3448778
Alignment:
Q  172 cataagttttctcaatggaaagtaattttatatgatgtgtgtcagacactaaataaatatgagtattttgttcgctaaaaatcaaattttgatttgtcag 271  Q
    ||||||||| ||||||| ||||||||| ||||||||| |||||| ||||||| ||||||||||||||||||| | ||||||||||| |||| |||||||     
T  3448617 cataagtttcctcaatgaaaagtaattctatatgatgcgtgtcaaacactaattaaatatgagtattttgttagataaaaatcaaactttggtttgtcac 3448716  T
Q  272 attgcacgattacatcctctttcgctataatcaactttcttaatgcgtgacctttttaatat 333  Q
    ||||   ||||| |||||||||  |||||||||| ||  ||| || ||||||||||||||||    
T  3448717 attgtgagattatatcctctttgtctataatcaatttcgttagtgtgtgacctttttaatat 3448778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 170 - 333
Target Start/End: Original strand, 11672174 - 11672335
Alignment:
Q  170 tccataagttttctcaatggaaagtaattttatatgatgtgtgtcagacactaaataaatatgagtattttgttcgctaaaaatcaaattttgatttgtc 269  Q
    ||||||||||   ||||| |||| |||||||||||||||||||   |||||||| ||||||||||||||||| | |||| || ||||| |||| || |||    
T  11672174 tccataagttccttcaatcgaaaataattttatatgatgtgtgattgacactaattaaatatgagtattttgatagctagaagtcaaactttggttagtc 11672273  T
Q  270 agattgcacgattacatcctctttcgctataatcaactttcttaatgcgtgacctttttaatat 333  Q
    | |||| | || || |||||||||||||||||||||||   |||||  ||||||||||||||||    
T  11672274 acattgtaagagtatatcctctttcgctataatcaactccgttaat--gtgacctttttaatat 11672335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 170 - 333
Target Start/End: Original strand, 11670495 - 11670658
Alignment:
Q  170 tccataagttttctcaatggaaagtaattttatatgatgtgtgtcagacactaaataaatatgagtattttgttcgctaaaaatcaaattttgatttgtc 269  Q
    ||||||||||  |||||| |||| ||||||||||||||||||||| |||||||| ||||||||| ||||||||  |||| ||||||||  ||  ||||||    
T  11670495 tccataagttccctcaatcgaaaataattttatatgatgtgtgtctgacactaattaaatatgaatattttgtcagctataaatcaaacatttgtttgtc 11670594  T
Q  270 agattgcacgattacatcctctttcgctataatcaactttcttaatgcgtgacctttttaatat 333  Q
    | | || | || || |||| ||||| ||||||| ||| |   ||||| ||||||||||||||||    
T  11670595 acagtgtaagagtatatcccctttcactataataaacctcggtaatgtgtgacctttttaatat 11670658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 172 - 270
Target Start/End: Original strand, 11673630 - 11673727
Alignment:
Q  172 cataagttttctcaatggaaagtaattttatatgatgtgtgtcagacactaaataaatatgagtattttgttcgctaaaaatcaaattttgatttgtca 270  Q
    ||||||||  |||||| |||| |||||| |||||||||||||| |||||||| ||||||| |||||||||||  |||||||||||| ||| ||||||||    
T  11673630 cataagttccctcaatcgaaaataattt-atatgatgtgtgtctgacactaattaaatataagtattttgttacctaaaaatcaaactttaatttgtca 11673727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 170 - 308
Target Start/End: Complemental strand, 36814516 - 36814379
Alignment:
Q  170 tccataagttttctcaatggaaagtaattttatatgatgtgtgtcagacactaaataaatatgagtattttgttcgctaaaaatcaaattttgatttgtc 269  Q
    ||||||||||  |||||| |||| |||||||||| || ||| |||||||| ||  ||||||||||||||||||  |||| |||||||| |||| ||||||    
T  36814516 tccataagttccctcaatcgaaaataattttatacgacgtg-gtcagacaatatttaaatatgagtattttgtcagctataaatcaaactttggtttgtc 36814418  T
Q  270 agattgcacgattacatcctctttcgctataatcaactt 308  Q
    | || | | || || ||||| ||||||||||||||||||    
T  36814417 acatcgtaagagtatatcctttttcgctataatcaactt 36814379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 182 - 333
Target Start/End: Original strand, 4032717 - 4032871
Alignment:
Q  182 ctcaatggaaagtaattttatatgatgtgtgtcagacacta---aataaatatgagtattttgttcgctaaaaatcaaattttgatttgtcagattgcac 278  Q
    |||||| |||| ||||| ||||||| ||||||||||||| |   | |||||| |||||||||||  |||| ||||||||   ||  |||||| ||||       
T  4032717 ctcaatcgaaaataattctatatgacgtgtgtcagacaccaccaattaaatacgagtattttgtcagctagaaatcaaaccctgggttgtcacattgtga 4032816  T
Q  279 gattacatcctctttcgctataatcaactttcttaatgcgtgacctttttaatat 333  Q
    | ||| ||||||||||||||||||||||||  ||||||||| |||||| ||||||    
T  4032817 gtttatatcctctttcgctataatcaacttcgttaatgcgtaacctttctaatat 4032871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 183 - 333
Target Start/End: Complemental strand, 10833868 - 10833720
Alignment:
Q  183 tcaatggaaagtaattttatatgatgtgtgtcagacactaaataaatatgagtattttgttcgctaaaaatcaaattttgatttgtcagattgcacgatt 282  Q
    ||||| |||||||||| |||||||||||||||||| |||||||||  || ||||||||||  | || |||||||| |||   |||||| |||  | || |    
T  10833868 tcaatcgaaagtaattctatatgatgtgtgtcagatactaaataa--attagtattttgtcaggtagaaatcaaactttagcttgtcacattataagagt 10833771  T
Q  283 acatcctctttcgctataatcaactttcttaatgcgtgacctttttaatat 333  Q
    |  ||||||||| ||| ||||||||   ||| |||||||||||||||||||    
T  10833770 atgtcctctttcactaaaatcaactccgttagtgcgtgacctttttaatat 10833720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 225 - 308
Target Start/End: Original strand, 13993396 - 13993479
Alignment:
Q  225 taaatatgagtattttgttcgctaaaaatcaaattttgatttgtcagattgcacgattacatcctctttcgctataatcaactt 308  Q
    ||||||||||||||||||  ||| |||||||||||||||||||||  |||| | || || |||||||||| ||| | |||||||    
T  13993396 taaatatgagtattttgtcagctgaaaatcaaattttgatttgtcgcattgtaagagtatatcctctttcactagagtcaactt 13993479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 289 - 329
Target Start/End: Complemental strand, 36817979 - 36817939
Alignment:
Q  289 tctttcgctataatcaactttcttaatgcgtgaccttttta 329  Q
    ||||| ||||||||||||||| |||||||||||||||||||    
T  36817979 tcttttgctataatcaactttgttaatgcgtgaccttttta 36817939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 95 - 155
Target Start/End: Original strand, 11672102 - 11672162
Alignment:
Q  95 gcctaaagcgaaatttgaatagaagcctttcaagtgtgtttaaagagaataagataaaatt 155  Q
    |||||||||||||||| ||||||  ||||| |||||  |||| ||||||||||| ||||||    
T  11672102 gcctaaagcgaaatttaaatagagaccttttaagtgcatttagagagaataagacaaaatt 11672162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 73; Significance: 3e-33; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 170 - 333
Target Start/End: Original strand, 17323130 - 17323291
Alignment:
Q  170 tccataagttttctcaatggaaagtaattttatatgatgtgtgtcagacactaaataaatatgagtattttgttcgctaaaaatcaaattttgatttgtc 269  Q
    ||||||||||   ||||| |||||||||| ||||||||||||||||||||||||||||||  || |||||||| ||||| |||||||| |||| ||||||    
T  17323130 tccataagttccttcaatcgaaagtaattctatatgatgtgtgtcagacactaaataaat--gaatattttgtccgctagaaatcaaactttggtttgtc 17323227  T
Q  270 agattgcacgattacatcctctttcgctataatcaactttcttaatgcgtgacctttttaatat 333  Q
    | ||||   || || ||||||||| ||||||||||||||  ||| |||||||||||||||||||    
T  17323228 acattgtgagaatatatcctcttttgctataatcaacttcgttagtgcgtgacctttttaatat 17323291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 170 - 333
Target Start/End: Original strand, 29171122 - 29171288
Alignment:
Q  170 tccataagttttctcaatggaaagtaattttatatgatgtgtgtcagacactaaataaatatgagtattttgttcgctaaaaatcaaattttgatttgtc 269  Q
    ||||||||||   ||||| |||||||||| ||||||||||||||||||||||||||||  |||||||||||||  |||| |||||||| |||| |||||     
T  29171122 tccataagttccttcaatcgaaagtaattctatatgatgtgtgtcagacactaaataa--atgagtattttgtctgctagaaatcaaactttggtttgtg 29171219  T
Q  270 agattgca-----cgattacatcctctttcgctataatcaactttcttaatgcgtgacctttttaatat 333  Q
    | ||||||      || || |||||| ||||||||||||||||   ||| |||||||||||||||||||    
T  29171220 acattgcattgtgagagtatatcctcgttcgctataatcaactccgttagtgcgtgacctttttaatat 29171288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 183 - 333
Target Start/End: Complemental strand, 41974088 - 41973936
Alignment:
Q  183 tcaatggaaagtaattttatatgatgtgtgtcagacactaaataaatatgagtattttgttcgctaaaaatcaaattttgatttgtcagattg---cacg 279  Q
    |||||||||||||||| ||||||||||||||| ||||| ||||||  |||||||||||||| ||||||||| ||| |||| ||||||| ||||    |      
T  41974088 tcaatggaaagtaattctatatgatgtgtgtcggacaccaaataa--atgagtattttgttagctaaaaataaaactttggtttgtcacattgtgatagt 41973991  T
Q  280 at-tacatcctctttcgctataatcaactttcttaatgcgtgacctttttaatat 333  Q
    || || ||||||||||||||||||||||| | ||| || ||||||||||||||||    
T  41973990 atatatatcctctttcgctataatcaactatgttagtgtgtgacctttttaatat 41973936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 172 - 333
Target Start/End: Original strand, 35549466 - 35549627
Alignment:
Q  172 cataagttttctcaatggaaagtaattttatatgatgtgtgtcagacactaaataaatatgagtattttgttcgctaaaaatcaaattttgatttgtcag 271  Q
    ||||||||  |||||| |||||||||| |||||||| ||||||||||||| | ||||||||||||||||||  |  |  ||||||| ||||  ||||||     
T  35549466 cataagttccctcaatcgaaagtaattctatatgatttgtgtcagacactgattaaatatgagtattttgtcagtcaggaatcaaactttggattgtcac 35549565  T
Q  272 attgcacgattacatcctctttcgctataatcaactttcttaatgcgtgacctttttaatat 333  Q
    ||||   || || |||||||||||||||||||||||   ||| || ||||||||||||||||    
T  35549566 attgtgagagtatatcctctttcgctataatcaactccgttagtgggtgacctttttaatat 35549627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 172 - 270
Target Start/End: Complemental strand, 14392108 - 14392011
Alignment:
Q  172 cataagttttctcaatggaaagtaattttatatgatgtgtgtcagacactaaataaatatgagtattttgttcgctaaaaatcaaattttgatttgtca 270  Q
    ||||||||  |||||| |||||||||| |||||||||  ||| ||||||||||||||||||||||||||||  |||| |||||| | |||| |||||||    
T  14392108 cataagttccctcaattgaaagtaattctatatgatga-tgttagacactaaataaatatgagtattttgtcagctagaaatcatactttggtttgtca 14392011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 170 - 226
Target Start/End: Complemental strand, 5816843 - 5816787
Alignment:
Q  170 tccataagttttctcaatggaaagtaattttatatgatgtgtgtcagacactaaata 226  Q
    ||||||||||  ||||||  |||||||||||||||||||||||| ||||||||||||    
T  5816843 tccataagttccctcaatcaaaagtaattttatatgatgtgtgttagacactaaata 5816787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 61; Significance: 4e-26; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 170 - 334
Target Start/End: Original strand, 36070441 - 36070605
Alignment:
Q  170 tccataagttttctcaatggaaagtaattttatatgatgtgtgtcagacactaaataaatatgagtattttgttcgctaaaaatcaaattttgatttgtc 269  Q
    ||||||||||| || | | ||||| |||| |||||||||||||||||||||||| |||| |||||||||||||   |||||||||||| |||| || |||    
T  36070441 tccataagtttcctgagtcgaaagcaattctatatgatgtgtgtcagacactaattaaacatgagtattttgtcaactaaaaatcaaactttggttagtc 36070540  T
Q  270 agattgcacgattacatcctctttcgctataatcaactttcttaatgcgtgacctttttaatatg 334  Q
    | |||  | || || |||||||||| ||||||||||||   ||| ||| ||||||||||||||||    
T  36070541 aaattataagagtatatcctctttcactataatcaactccgttagtgcatgacctttttaatatg 36070605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 172 - 262
Target Start/End: Original strand, 33625392 - 33625482
Alignment:
Q  172 cataagttttctcaatggaaagtaattttatatgatgtgtgtcagacactaaataaatatgagtattttgttcgctaaaaatcaaattttg 262  Q
    ||||||||| ||||||  ||||||||| ||||||||||  || ||||||||||||||||||||||||||||  | ||||||||||||||||    
T  33625392 cataagtttcctcaatcaaaagtaattatatatgatgtacgttagacactaaataaatatgagtattttgtcagttaaaaatcaaattttg 33625482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 183 - 275
Target Start/End: Complemental strand, 40880614 - 40880522
Alignment:
Q  183 tcaatggaaagtaattttatatgatgtgtgtcagacactaaataaatatgagtattttgttcgctaaaaatcaaattttgatttgtcagattg 275  Q
    ||||| |||||||||| |||||||||||| ||||||||||| ||||||||| ||||||||  |||| |||||||| |||| ||||||| ||||    
T  40880614 tcaatcgaaagtaattctatatgatgtgtttcagacactaattaaatatgaatattttgtgagctataaatcaaactttggtttgtcatattg 40880522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 172 - 262
Target Start/End: Original strand, 33623105 - 33623195
Alignment:
Q  172 cataagttttctcaatggaaagtaattttatatgatgtgtgtcagacactaaataaatatgagtattttgttcgctaaaaatcaaattttg 262  Q
    ||||| ||| ||||||  ||||||||| ||||||||||  ||  |||||||||||||||||||||||||||  | ||||||||||||||||    
T  33623105 cataaatttcctcaatcaaaagtaattatatatgatgtacgtttgacactaaataaatatgagtattttgtcagttaaaaatcaaattttg 33623195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 173 - 236
Target Start/End: Complemental strand, 13860468 - 13860405
Alignment:
Q  173 ataagttttctcaatggaaagtaattttatatgatgtgtgtcagacactaaataaatatgagta 236  Q
    |||||||  |||||| |||||||||||||||||||||||||| || ||||| ||||||||||||    
T  13860468 ataagttccctcaatcgaaagtaattttatatgatgtgtgtctgatactaattaaatatgagta 13860405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 183 - 226
Target Start/End: Complemental strand, 18024881 - 18024838
Alignment:
Q  183 tcaatggaaagtaattttatatgatgtgtgtcagacactaaata 226  Q
    ||||| |||||||||| |||||||||||||| ||||||||||||    
T  18024881 tcaatcgaaagtaattctatatgatgtgtgttagacactaaata 18024838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 56; Significance: 4e-23; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 190 - 332
Target Start/End: Original strand, 7295376 - 7295516
Alignment:
Q  190 aaagtaattttatatgatgtgtgtcagacactaaataaatatgagtattttgttcgctaaaaatcaaattttgatttgtcagattgcacgattacatcct 289  Q
    ||||||||| |||| ||||||||||| |||||||||||||  |||||||||||   ||| |||||||| |||| ||||||| ||||   || || |||||    
T  7295376 aaagtaattatatacgatgtgtgtcaaacactaaataaat--gagtattttgtcaactagaaatcaaactttggtttgtcacattgtgtgagtatatcct 7295473  T
Q  290 ctttcgctataatcaactttcttaatgcgtgacctttttaata 332  Q
    ||||||||||||||||||   ||| ||||||||||||||||||    
T  7295474 ctttcgctataatcaactccgttagtgcgtgacctttttaata 7295516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 172 - 303
Target Start/End: Original strand, 1515165 - 1515296
Alignment:
Q  172 cataagttttctcaatggaaagtaattttatatgatgtgtgtcagacactaaataaatatgagtattttgttcgctaaaaatcaaattttgatttgtcag 271  Q
    |||||||| ||| ||| |||| |||||||||||||||| ||| ||||||||||||||||||||||||||||  | |||||||||||  ||| ||||| |     
T  1515165 cataagttctctaaattgaaactaattttatatgatgtatgttagacactaaataaatatgagtattttgtcagttaaaaatcaaacattggtttgttac 1515264  T
Q  272 attgcacgattacatcctctttcgctataatc 303  Q
    ||||   || || ||||||||| |||||||||    
T  1515265 attgtgagaatatatcctcttttgctataatc 1515296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 172 - 333
Target Start/End: Original strand, 1520047 - 1520206
Alignment:
Q  172 cataagttttctcaatggaaagtaattttatatgatgtgtgtcagacactaaataaatatgagtattttgttcgctaaaaatcaaattttgatttgtcag 271  Q
    ||||||||| |||||| |||||||||| |||||||||| ||| |||||||||| ||||  |||||||||||  |||| ||||||||||||| |||||||     
T  1520047 cataagtttcctcaattgaaagtaattctatatgatgtatgttagacactaaacaaat--gagtattttgtcagctagaaatcaaattttggtttgtcac 1520144  T
Q  272 attgcacgattacatcctctttcgctataatcaactttcttaatgcgtgacctttttaatat 333  Q
    |  |   || || ||||||||||||| ||||||||| | ||| || | |||| |||||||||    
T  1520145 aaggtgagagtatatcctctttcgctctaatcaactctgttagtgagcgaccattttaatat 1520206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 172 - 240
Target Start/End: Original strand, 2512252 - 2512320
Alignment:
Q  172 cataagttttctcaatggaaagtaattttatatgatgtgtgtcagacactaaataaatatgagtatttt 240  Q
    ||||||||  |||||| ||||||||||||||||||||||| || |||||||| ||||||||||||||||    
T  2512252 cataagttccctcaatcgaaagtaattttatatgatgtgtctccgacactaattaaatatgagtatttt 2512320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 178 - 333
Target Start/End: Original strand, 7300358 - 7300514
Alignment:
Q  178 ttttctcaatggaaagtaattttatatgatgtgtgtcagacactaaataaatatgagtattttgttcgctaa---aaatcaaattttgatttgtcagatt 274  Q
    |||| ||||| ||||||||||  ||| |||||||||||  ||||||||||||  |||||||||||  ||||    |||||||| |||||||||||| | |    
T  7300358 ttttgtcaatcgaaagtaattccatacgatgtgtgtcatccactaaataaat--gagtattttgtcagctagcagaaatcaaactttgatttgtcacaat 7300455  T
Q  275 gcacgattacatcctctttcgctataatcaactttcttaatgcgtgacctttttaatat 333  Q
    |   || || |||||||||| |||||||||||| | ||| |||||| ||||||||||||    
T  7300456 gtgagagtatatcctctttccctataatcaactctgttactgcgtggcctttttaatat 7300514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 172 - 303
Target Start/End: Original strand, 1515869 - 1515998
Alignment:
Q  172 cataagttttctcaatggaaagtaattttatatgatgtgtgtcagacactaaataaatatgagtattttgttcgctaaaaatcaaattttgatttgtcag 271  Q
    ||||||||| |||||| |||||||||| |||||||||| ||| |||||||||  ||||  |||||||||||    |||||||||||  ||| |||||||     
T  1515869 cataagtttcctcaattgaaagtaattctatatgatgtatgttagacactaagcaaat--gagtattttgtcacttaaaaatcaaacattggtttgtcac 1515966  T
Q  272 attgcacgattacatcctctttcgctataatc 303  Q
    ||||   || || ||||||||||||| |||||    
T  1515967 attgtgagaatatatcctctttcgctctaatc 1515998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 172 - 303
Target Start/End: Original strand, 1517960 - 1518089
Alignment:
Q  172 cataagttttctcaatggaaagtaattttatatgatgtgtgtcagacactaaataaatatgagtattttgttcgctaaaaatcaaattttgatttgtcag 271  Q
    ||||||||| |||||| |||||||||| |||||||||| ||| |||||||||  ||||  |||||||||||    |||||||||||  ||| |||||||     
T  1517960 cataagtttcctcaattgaaagtaattctatatgatgtatgttagacactaagcaaat--gagtattttgtcacttaaaaatcaaacattggtttgtcac 1518057  T
Q  272 attgcacgattacatcctctttcgctataatc 303  Q
    ||||   || || ||||||||||||| |||||    
T  1518058 attgtgagaatatatcctctttcgctctaatc 1518089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 6e-22; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 172 - 333
Target Start/End: Original strand, 22130091 - 22130252
Alignment:
Q  172 cataagttttctcaatggaaagtaattttatatgatgtgtgtcagacactaaataaatatgagtattttgttcgctaaaaatcaaattttgatttgtcag 271  Q
    ||||||||| || ||| |||| |||||||||||||||| ||||| ||||||| |||| |||||||||||||   ||| |||||||| |||  |||||||     
T  22130091 cataagtttccttaatcgaaaataattttatatgatgtatgtcatacactaattaaacatgagtattttgtcaactagaaatcaaactttagtttgtcac 22130190  T
Q  272 attgcacgattacatcctctttcgctataatcaactttcttaatgcgtgacctttttaatat 333  Q
    |||| | || || ||| ||||||||||| |||||||   ||| | |||||||||||||||||    
T  22130191 attgtaagagtatatcatctttcgctattatcaactccgttagtacgtgacctttttaatat 22130252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 172 - 333
Target Start/End: Complemental strand, 40501015 - 40500854
Alignment:
Q  172 cataagttttctcaatggaaagtaattttatatgatgtgtgtcagacactaaataaatatgagtattttgttcgctaaaaatcaaattttgatttgtcag 271  Q
    ||||||||| || ||| |||| |||||||||||||||| ||||| ||||||| |||| |||||||||||||   ||| |||||||| |||  |||||||     
T  40501015 cataagtttccttaatcgaaaataattttatatgatgtatgtcatacactaattaaacatgagtattttgtcaactagaaatcaaactttagtttgtcac 40500916  T
Q  272 attgcacgattacatcctctttcgctataatcaactttcttaatgcgtgacctttttaatat 333  Q
    |||| | || || ||| ||||||||||| |||||||   ||| | |||||||||||||||||    
T  40500915 attgtaagagtatatcatctttcgctattatcaactccgttagtacgtgacctttttaatat 40500854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 95 - 275
Target Start/End: Complemental strand, 41400965 - 41400788
Alignment:
Q  95 gcctaaagcgaaatttgaatagaagcctttcaagtgtgtttaaagagaataagataaaattnnnnnnnnnnnnnntccataagttttctcaatggaaagt 194  Q
    |||||||||||||||| |||| |||| ||| ||||||||||| ||| ||||||| ||||||              ||||||| ||  ||||| | |||||    
T  41400965 gcctaaagcgaaatttaaataaaagctttttaagtgtgtttagagaaaataagacaaaatt---aagaaacaaattccataaattccctcaaagaaaagt 41400869  T
Q  195 aattttatatgatgtgtgtcagacactaaataaatatgagtattttgttcgctaaaaatcaaattttgatttgtcagattg 275  Q
    |||| ||||| |||||||||| ||||||| |||||| |||||||||||| | || ||||||||||||  ||||||| ||||    
T  41400868 aattatatataatgtgtgtcatacactaattaaatacgagtattttgttagttagaaatcaaattttagtttgtcacattg 41400788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 226
Target Start/End: Original strand, 33542073 - 33542118
Alignment:
Q  181 tctcaatggaaagtaattttatatgatgtgtgtcagacactaaata 226  Q
    ||||||| |||||||||||||| ||||| |||||||||| ||||||    
T  33542073 tctcaattgaaagtaattttatttgatgcgtgtcagacattaaata 33542118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 215
Target Start/End: Original strand, 48013261 - 48013306
Alignment:
Q  170 tccataagttttctcaatggaaagtaattttatatgatgtgtgtca 215  Q
    |||||| ||||||||||| || ||||||| ||||||||||||||||    
T  48013261 tccatatgttttctcaatcgatagtaattctatatgatgtgtgtca 48013306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 6e-22; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 172 - 333
Target Start/End: Original strand, 3070963 - 3071124
Alignment:
Q  172 cataagttttctcaatggaaagtaattttatatgatgtgtgtcagacactaaataaatatgagtattttgttcgctaaaaatcaaattttgatttgtcag 271  Q
    ||||||||  ||||||| ||||||||| | |||||| ||  ||||||||||| ||||||||||||||||||  |||| |||||||| |||| |||||||     
T  3070963 cataagttccctcaatgaaaagtaattatctatgatatgcttcagacactaattaaatatgagtattttgtcagctagaaatcaaactttggtttgtcac 3071062  T
Q  272 attgcacgattacatcctctttcgctataatcaactttcttaatgcgtgacctttttaatat 333  Q
    ||||   || || ||  ||||| | ||||||||||||  |||||||||||||||| ||||||    
T  3071063 attgtgagagtatataatcttttgttataatcaacttctttaatgcgtgacctttctaatat 3071124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 194 - 333
Target Start/End: Complemental strand, 49058603 - 49058463
Alignment:
Q  194 taattttatatgatgtgtgtcagacactaaataaatatgagtattttgttcg-ctaaaaatcaaattttgatttgtcagattgcacgattacatcctctt 292  Q
    ||||| |||||||||||||||| ||||||| ||||||| | | ||||||  | | |||||||||| ||| |||||||| ||||   || || ||| ||||    
T  49058603 taattctatatgatgtgtgtcatacactaattaaatataaatgttttgtcagtcaaaaaatcaaactttaatttgtcacattgtgagagtatatcttctt 49058504  T
Q  293 tcgctataatcaactttcttaatgcgtgacctttttaatat 333  Q
    | | ||||||||| ||  |||||||||||  ||||||||||    
T  49058503 ttgttataatcaatttcattaatgcgtgatttttttaatat 49058463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 250 - 334
Target Start/End: Original strand, 22497567 - 22497651
Alignment:
Q  250 aaatcaaattttgatttgtcagattgcacgattacatcctctttcgctataatcaactttcttaatgcgtgacctttttaatatg 334  Q
    |||||||| |||| ||||||| ||||   || || ||||||||| |||||||||||||   ||||||| ||||| ||||||||||    
T  22497567 aaatcaaactttggtttgtcatattgtgagagtatatcctcttttgctataatcaactccgttaatgcatgaccattttaatatg 22497651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 51; Significance: 4e-20; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 173 - 307
Target Start/End: Original strand, 13014328 - 13014462
Alignment:
Q  173 ataagttttctcaatggaaagtaattttatatgatgtgtgtcagacactaaataaatatgagtattttgttcgctaaaaatcaaattttgatttgtcaga 272  Q
    |||| |||| ||||| |||||||||| |||||||| ||| | ||| ||||| ||||||||||||||||||   |||||||| |||||||| ||||||| |    
T  13014328 ataacttttttcaatcgaaagtaattctatatgatatgtatgagatactaattaaatatgagtattttgtcacctaaaaattaaattttggtttgtcaca 13014427  T
Q  273 ttgcacgattacatcctctttcgctataatcaact 307  Q
    | | | || || |||||||||||| ||||||||||    
T  13014428 tcgtaagagtatatcctctttcgccataatcaact 13014462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 172 - 240
Target Start/End: Original strand, 38063850 - 38063918
Alignment:
Q  172 cataagttttctcaatggaaagtaattttatatgatgtgtgtcagacactaaataaatatgagtatttt 240  Q
    ||||||||| |||||| |||||||||| || | ||||||||| ||||| ||| ||||||||||||||||    
T  38063850 cataagtttcctcaatcgaaagtaattctacaagatgtgtgttagacattaattaaatatgagtatttt 38063918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 189 - 307
Target Start/End: Original strand, 13012630 - 13012748
Alignment:
Q  189 gaaagtaattttatatgatgtgtgtcagacactaaataaatatgagtattttgttcgctaaaaatcaaattttgatttgtcagattgcacgattacatcc 288  Q
    |||||||| | |||||||||||||||| ||||||| ||||||   |||||||||  ||| || ||||||||||| ||||||  ||||   || || |||     
T  13012630 gaaagtaagtctatatgatgtgtgtcatacactaattaaatacaggtattttgtcagctgaagatcaaattttggtttgtcccattgtgagagtatatcg 13012729  T
Q  289 tctttcgctataatcaact 307  Q
    ||||||||| |||||||||    
T  13012730 tctttcgctgtaatcaact 13012748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 176 - 226
Target Start/End: Complemental strand, 21240601 - 21240551
Alignment:
Q  176 agttttctcaatggaaagtaattttatatgatgtgtgtcagacactaaata 226  Q
    ||||| |||||| |||||||||| |||||||||||||| ||||||||||||    
T  21240601 agtttcctcaatcgaaagtaattctatatgatgtgtgtgagacactaaata 21240551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 170 - 242
Target Start/End: Original strand, 3956552 - 3956624
Alignment:
Q  170 tccataagttttctcaatggaaagtaattttatatgatgtgtgtcagacactaaataaatatgagtattttgt 242  Q
    ||||||||||  |||||| |||||||||| |||||||| | ||||| ||||||| ||||||||||||||||||    
T  3956552 tccataagttccctcaatcgaaagtaattctatatgatctttgtcaaacactaattaaatatgagtattttgt 3956624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 189 - 229
Target Start/End: Original strand, 34618618 - 34618658
Alignment:
Q  189 gaaagtaattttatatgatgtgtgtcagacactaaataaat 229  Q
    |||| ||||||||||||||||||||| |||||||| |||||    
T  34618618 gaaattaattttatatgatgtgtgtccgacactaattaaat 34618658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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