View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3471_low_23 (Length: 335)
Name: NF3471_low_23
Description: NF3471
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3471_low_23 |
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| [»] scaffold0631 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 302; Significance: 1e-170; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 1 - 318
Target Start/End: Complemental strand, 41533016 - 41532699
Alignment:
| Q |
1 |
atgatagaatcatgtcaagggtatttgtaaacaaacccgacatattttttctttatggttatggaggcacagggaagacttttatttggagggctatgtc |
100 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41533016 |
atgatagaatcatgtcaagggtatttgaaaacaaacccgacatattttttctttatggttatggaggcacagggaagacttttatttggagggctatgtc |
41532917 |
T |
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| Q |
101 |
agcagcattgagatcaaaaggtcaaattgtcttaactgttgcttcaagtgggatagctgcactactcattccaggaggaagaactgcacactcaaggttt |
200 |
Q |
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| T |
41532916 |
agcagcattgagatcaaaaggtcaaattgtcttaactgttgcttcaagtgggatagctgcactactcattccaggaggaagaactgcacactcaaggttt |
41532817 |
T |
|
| Q |
201 |
gctattcctataaatattgatcaactctctacatgtgaaataaaacaaaagagttatttagctaatttgattgccaaaagaaaattgatcatttgggatg |
300 |
Q |
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| T |
41532816 |
gctattcctataaatattgatcaactctctacatgtgaaataaaacaaaagagtcatttagctaatttgattgccaaaacaaaattgatcgtttgggatg |
41532717 |
T |
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| Q |
301 |
aagcaccaatgatgcata |
318 |
Q |
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|||||||||||||||||| |
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| T |
41532716 |
aagcaccaatgatgcata |
41532699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 45 - 112
Target Start/End: Complemental strand, 23090656 - 23090589
Alignment:
| Q |
45 |
ttttttctttatggttatggaggcacagggaagacttttatttggagggctatgtcagcagcattgag |
112 |
Q |
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| T |
23090656 |
ttttttctgtacggttatggtggtacggggaagacatttatttggagggctttgtcagctgctttgag |
23090589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 59; Significance: 6e-25; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 43 - 221
Target Start/End: Original strand, 44583367 - 44583545
Alignment:
| Q |
43 |
tattttttctttatggttatggaggcacagggaagacttttatttggagggctatgtcagcagcattgagatcaaaaggtcaaattgtcttaactgttgc |
142 |
Q |
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| T |
44583367 |
tattttttcttcatggctacgggggcacaggaaagacttatatttggagggctatgtcagctgcattacgctcaaaaggagatattgttctaacagttgc |
44583466 |
T |
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| Q |
143 |
ttcaagtgggatagctgcactactcattccaggaggaagaactgcacactcaaggtttgctattcctataaatattgat |
221 |
Q |
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| T |
44583467 |
atccagtggaatagctgctttgttgattcctggaggaagaactgcacattcaaggttttccattcctatacatgttgat |
44583545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 59; Significance: 6e-25; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 42 - 196
Target Start/End: Complemental strand, 34418321 - 34418167
Alignment:
| Q |
42 |
atattttttctttatggttatggaggcacagggaagacttttatttggagggctatgtcagcagcattgagatcaaaaggtcaaattgtcttaactgttg |
141 |
Q |
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|||||||||||||||||||| || ||||||||||| || ||| | |||||||||||| |||| |||||||||||| ||||| | ||||| |||| |||| |
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| T |
34418321 |
atattttttctttatggttacggtggcacagggaaaacatttttatggagggctatggcagctgcattgagatcacaaggtgagattgttttaatagttg |
34418222 |
T |
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| Q |
142 |
cttcaagtgggatagctgcactactcattccaggaggaagaactgcacactcaag |
196 |
Q |
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| T |
34418221 |
catccagtggcatagctgcgttactcatacctggaggcagaaccgcacattcaag |
34418167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0631 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0631
Description:
Target: scaffold0631; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 69 - 157
Target Start/End: Complemental strand, 5747 - 5659
Alignment:
| Q |
69 |
acagggaagacttttatttggagggctatgtcagcagcattgagatcaaaaggtcaaattgtcttaactgttgcttcaagtgggatagc |
157 |
Q |
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| T |
5747 |
acaggaaaaacttttatttggagagctatgtcatctgcattgagatccaaaggacaaattgttctaacagtagcgtcaagtggtatagc |
5659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 43 - 161
Target Start/End: Original strand, 7781078 - 7781196
Alignment:
| Q |
43 |
tattttttctttatggttatggaggcacagggaagacttttatttggagggctatgtcagcagcattgagatcaaaaggtcaaattgtcttaactgttgc |
142 |
Q |
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| T |
7781078 |
tattttttctatatggatacggcggaacaggcaagacgtttctttggagagcaatgtcggctgcgatacgatcaagaggtgaaatagttttaacagttgc |
7781177 |
T |
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| Q |
143 |
ttcaagtgggatagctgca |
161 |
Q |
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| T |
7781178 |
ttcaagtggtatagctgca |
7781196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 90
Target Start/End: Original strand, 33445197 - 33445242
Alignment:
| Q |
45 |
ttttttctttatggttatggaggcacagggaagacttttatttgga |
90 |
Q |
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|||||| |||||||||||||||| ||||||||||||| | |||||| |
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| T |
33445197 |
ttttttgtttatggttatggaggaacagggaagacttatctttgga |
33445242 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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