View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3471_low_24 (Length: 330)

Name: NF3471_low_24
Description: NF3471
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3471_low_24
NF3471_low_24
[»] chr5 (2 HSPs)
chr5 (71-198)||(18481781-18481908)
chr5 (71-198)||(33905536-33905663)
[»] chr1 (2 HSPs)
chr1 (71-198)||(34345772-34345899)
chr1 (217-312)||(47105973-47106068)
[»] chr2 (1 HSPs)
chr2 (71-198)||(6812693-6812820)
[»] chr3 (3 HSPs)
chr3 (71-198)||(46833977-46834104)
chr3 (100-142)||(22513980-22514022)
chr3 (100-142)||(32391482-32391524)
[»] chr8 (2 HSPs)
chr8 (83-198)||(6283041-6283156)
chr8 (78-198)||(16425372-16425491)
[»] chr4 (1 HSPs)
chr4 (100-143)||(8973032-8973075)


Alignment Details
Target: chr5 (Bit Score: 128; Significance: 4e-66; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 71 - 198
Target Start/End: Original strand, 18481781 - 18481908
Alignment:
Q  71 ggtgtggaaaaaggaacatgaaatatcatttttgccccttgctttttaataaaattacagaattgccatccacatcagcaagtggtatgaggtgtgtaca 170  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18481781 ggtgtggaaaaaggaacatgaaatatcatttttgccccttgctttttaataaaattacagaattgccatccacatcagcaagtggtatgaggtgtgtaca 18481880  T
Q  171 aaagagagtggtccatctatcattttcc 198  Q
    ||||||||||||||||||||||||||||    
T  18481881 aaagagagtggtccatctatcattttcc 18481908  T

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Target: chr5; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 71 - 198
Target Start/End: Original strand, 33905536 - 33905663
Alignment:
Q  71 ggtgtggaaaaaggaacatgaaatatcatttttgccccttgctttttaataaaattacagaattgccatccacatcagcaagtggtatgaggtgtgtaca 170  Q
    ||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| || ||||||||||||||||||||||||||||||||||||||||    
T  33905536 ggtgtggaaaaaggaacatgaaatatcatttttgccccttgtttttcaataaaattgcaaaattgccatccacatcagcaagtggtatgaggtgtgtaca 33905635  T
Q  171 aaagagagtggtccatctatcattttcc 198  Q
    | ||||||||||  ||||||||||||||    
T  33905636 agagagagtggttgatctatcattttcc 33905663  T

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Target: chr1 (Bit Score: 128; Significance: 4e-66; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 71 - 198
Target Start/End: Original strand, 34345772 - 34345899
Alignment:
Q  71 ggtgtggaaaaaggaacatgaaatatcatttttgccccttgctttttaataaaattacagaattgccatccacatcagcaagtggtatgaggtgtgtaca 170  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34345772 ggtgtggaaaaaggaacatgaaatatcatttttgccccttgctttttaataaaattacagaattgccatccacatcagcaagtggtatgaggtgtgtaca 34345871  T
Q  171 aaagagagtggtccatctatcattttcc 198  Q
    ||||||||||||||||||||||||||||    
T  34345872 aaagagagtggtccatctatcattttcc 34345899  T

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Target: chr1; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 217 - 312
Target Start/End: Complemental strand, 47106068 - 47105973
Alignment:
Q  217 tcccattcaaaatcaaaaacaatattgattacgtaacaactagggtcctcgtgatgttaagaaatacaattgactttataataggaggaataaaga 312  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47106068 tcccattcaaaatcaaaaacagtattgattacgtaacaactagggtcctcgtgatgttaagaaatacaattgactttataataggaggaataaaga 47105973  T

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Target: chr2 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 71 - 198
Target Start/End: Original strand, 6812693 - 6812820
Alignment:
Q  71 ggtgtggaaaaaggaacatgaaatatcatttttgccccttgctttttaataaaattacagaattgccatccacatcagcaagtggtatgaggtgtgtaca 170  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||    
T  6812693 ggtgtggaaaaaggaacatgaaatatcatttttgccccttgctttttaataaaattacagaattgccattcatatcagcaagtggtatgaggtgtgtaca 6812792  T
Q  171 aaagagagtggtccatctatcattttcc 198  Q
    ||||||||||||||||||||||||||||    
T  6812793 aaagagagtggtccatctatcattttcc 6812820  T

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Target: chr3 (Bit Score: 96; Significance: 5e-47; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 71 - 198
Target Start/End: Original strand, 46833977 - 46834104
Alignment:
Q  71 ggtgtggaaaaaggaacatgaaatatcatttttgccccttgctttttaataaaattacagaattgccatccacatcagcaagtggtatgaggtgtgtaca 170  Q
    |||||||||||||||||||||||||||||||||||| |||| |||| ||||||||| || ||||||||||||||||||||||||||||||||||||||||    
T  46833977 ggtgtggaaaaaggaacatgaaatatcatttttgcctcttgtttttcaataaaattgcaaaattgccatccacatcagcaagtggtatgaggtgtgtaca 46834076  T
Q  171 aaagagagtggtccatctatcattttcc 198  Q
    | ||||||||||  ||||||||||||||    
T  46834077 agagagagtggttgatctatcattttcc 46834104  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 100 - 142
Target Start/End: Complemental strand, 22514022 - 22513980
Alignment:
Q  100 ttttgccccttgctttttaataaaattacagaattgccatcca 142  Q
    |||||||||||||||||||| ||||||||| | ||||||||||    
T  22514022 ttttgccccttgctttttaacaaaattacaaagttgccatcca 22513980  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 100 - 142
Target Start/End: Complemental strand, 32391524 - 32391482
Alignment:
Q  100 ttttgccccttgctttttaataaaattacagaattgccatcca 142  Q
    |||||||||||||||||||| ||||||||| | ||||||||||    
T  32391524 ttttgccccttgctttttaacaaaattacaaagttgccatcca 32391482  T

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Target: chr8 (Bit Score: 76; Significance: 4e-35; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 83 - 198
Target Start/End: Original strand, 6283041 - 6283156
Alignment:
Q  83 ggaacatgaaatatcatttttgccccttgctttttaataaaattacagaattgccatccacatcagcaagtggtatgaggtgtgtacaaaagagagtggt 182  Q
    |||||||||||| |||||||| ||||||| |||| ||||||| |||||||||| |||||||||||||||||||||  | ||||||||||||| |||||||    
T  6283041 ggaacatgaaatctcatttttaccccttgtttttaaataaaactacagaattgtcatccacatcagcaagtggtacaaagtgtgtacaaaagggagtggt 6283140  T
Q  183 ccatctatcattttcc 198  Q
    ||||||||||||||||    
T  6283141 ccatctatcattttcc 6283156  T

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Target: chr8; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 78 - 198
Target Start/End: Original strand, 16425372 - 16425491
Alignment:
Q  78 aaaaaggaacatgaaatatcatttttgccccttgctttttaataaaattacagaattgccatccacatcagcaagtggtatgaggtgtgtacaaaagaga 177  Q
    |||| ||||| |||||| ||| |||| |||||| |||||||||||||||||| ||||| ||||||||||||||||||| || | ||||||||||||| ||    
T  16425372 aaaagggaacgtgaaatctcaattttaccccttactttttaataaaattacataattgtcatccacatcagcaagtggcataatgtgtgtacaaaag-ga 16425470  T
Q  178 gtggtccatctatcattttcc 198  Q
     ||||| ||||||||||||||    
T  16425471 atggtcgatctatcattttcc 16425491  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 100 - 143
Target Start/End: Complemental strand, 8973075 - 8973032
Alignment:
Q  100 ttttgccccttgctttttaataaaattacagaattgccatccac 143  Q
    |||||||||||||||||||| ||||||||| | |||||||||||    
T  8973075 ttttgccccttgctttttaacaaaattacaaagttgccatccac 8973032  T

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