View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3471_low_25 (Length: 326)
Name: NF3471_low_25
Description: NF3471
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3471_low_25 |
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Alignment Details
Target: chr3 (Bit Score: 280; Significance: 1e-157; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 11 - 310
Target Start/End: Original strand, 30471472 - 30471771
Alignment:
| Q |
11 |
cagagatggaagtagctactttggaaattacatctacacgagtgcttgggagtttagtgaacaaatgcgagaaataattacgggcaatattttgtagttc |
110 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30471472 |
cagagatggaagtagctactttggaaattacatctgcacgagtgcttgtgagtttagtgaacaaatgcgagaaataattacgggcaatattttgtagttc |
30471571 |
T |
|
| Q |
111 |
atcatcttttcgacaaacggtgccatttgaattttcgaggtgttcaatgcggttcacttttctgcgtgaggtagctactgcatggaagaacttggtattt |
210 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
30471572 |
atcctcttttcgacaaacggtgccatttgaattttcgaggtgttcaatgcggttcacttttctgcgtgaggtagctgctgcatggaagaacttggtattt |
30471671 |
T |
|
| Q |
211 |
aaatccccttctttataccaaaatgttttttccctttgcttccaaaaaagatcatcctgtacaagtagcttgtccaacttatttttgagagaattaaaat |
310 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30471672 |
aaatccccttctttataccaaaatgtttttgccctttgcttccaaaaaagatcatcctgtacaagtagcttgtccaacttatttttgagagaattaaaat |
30471771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 116 - 275
Target Start/End: Complemental strand, 25734049 - 25733890
Alignment:
| Q |
116 |
cttttcgacaaacggtgccatttgaattttcgaggtgttcaatgcggttcacttttctgcgtgaggtagctactgcatggaagaacttggtatttaaatc |
215 |
Q |
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||||||||||||| ||||||| |||||||||||| |||||||| || || || ||||| | ||||||||| | || || |||||||| || |||||||| |
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| T |
25734049 |
cttttcgacaaactgtgccatgtgaattttcgagatgttcaattcgattaacctttcttctagaggtagctgccgcgtgaaagaactttgtgtttaaatc |
25733950 |
T |
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| Q |
216 |
cccttctttataccaaaatgttttttccctttgcttccaaaaaagatcatcctgtacaag |
275 |
Q |
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| T |
25733949 |
tccttctctgtaccagaatgtttttgctcgttgtttccaaaagaggttatcctgcacaag |
25733890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 280; Significance: 1e-157; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 11 - 310
Target Start/End: Original strand, 45277076 - 45277375
Alignment:
| Q |
11 |
cagagatggaagtagctactttggaaattacatctacacgagtgcttgggagtttagtgaacaaatgcgagaaataattacgggcaatattttgtagttc |
110 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45277076 |
cagagatggaagtagctactttggaaattacatctgcacgagtgcttgagagtttagtgaacaaatgcgagaaataattacgggcaatattttgtagttc |
45277175 |
T |
|
| Q |
111 |
atcatcttttcgacaaacggtgccatttgaattttcgaggtgttcaatgcggttcacttttctgcgtgaggtagctactgcatggaagaacttggtattt |
210 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
45277176 |
atcctcttttcgacaaacggtgccatttgaattttcgaggtgttcaatgcggttcacttttctgcgtgaggtagctgctgcatggaagaacttggtattt |
45277275 |
T |
|
| Q |
211 |
aaatccccttctttataccaaaatgttttttccctttgcttccaaaaaagatcatcctgtacaagtagcttgtccaacttatttttgagagaattaaaat |
310 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45277276 |
aaatccccttctttataccaaaatgtttttgccctttgcttccaaaaaagatcatcctgtacaagtagcttgtccaacttatttttgagagaattaaaat |
45277375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 190 - 290
Target Start/End: Complemental strand, 35319499 - 35319399
Alignment:
| Q |
190 |
gcatggaagaacttggtatttaaatccccttctttataccaaaatgttttttccctttgcttccaaaaaagatcatcctgtacaagtagcttgtccaact |
289 |
Q |
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||||| || |||||||||||||||||||| || |||||||| |||||| ||||||| |||||||| | |||||| || |||||||||||||| |||| |
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| T |
35319499 |
gcatgaaaaaacttggtatttaaatccccatcacggtaccaaaaagtttttgccctttgtttccaaaacaaatcatcttgcacaagtagcttgtctaact |
35319400 |
T |
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| Q |
290 |
t |
290 |
Q |
| |
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| |
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| T |
35319399 |
t |
35319399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 52 - 154
Target Start/End: Complemental strand, 20861290 - 20861188
Alignment:
| Q |
52 |
gtgcttgggagtttagtgaacaaatgcgagaaataattacgggcaatattttgtagttcatcatcttttcgacaaacggtgccatttgaattttcgaggt |
151 |
Q |
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||||||||||| |||||||||||||||||||| || | || ||||| ||| ||||| || |||||||||||||| ||||||||||| ||||| |||| |
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| T |
20861290 |
gtgcttgggagcttagtgaacaaatgcgagaagtagtatcgcgcaattacttgaagttcttcttcttttcgacaaactgtgccatttgagttttcaaggt |
20861191 |
T |
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| Q |
152 |
gtt |
154 |
Q |
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||| |
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| T |
20861190 |
gtt |
20861188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 190 - 290
Target Start/End: Original strand, 33307945 - 33308045
Alignment:
| Q |
190 |
gcatggaagaacttggtatttaaatccccttctttataccaaaatgttttttccctttgcttccaaaaaagatcatcctgtacaagtagcttgtccaact |
289 |
Q |
| |
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||||| || |||||||||||||||||||| || |||||||| |||||| ||||||| |||||||| | |||||| || |||||||||||||| |||| |
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| T |
33307945 |
gcatgaaaaaacttggtatttaaatccccatcacggtaccaaaaagtttttgccctttgtttccaaaacaaatcatcttgcacaagtagcttgtctaact |
33308044 |
T |
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| Q |
290 |
t |
290 |
Q |
| |
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| |
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| T |
33308045 |
t |
33308045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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