View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3471_low_26 (Length: 324)
Name: NF3471_low_26
Description: NF3471
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3471_low_26 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 127; Significance: 1e-65; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 92 - 318
Target Start/End: Complemental strand, 29377519 - 29377293
Alignment:
| Q |
92 |
gtaattacttgcctgagcaataatggtgatgtcaagagtattttcaaatggcaagacactggaacttgttacagagagatatagaagttgaagctgcaac |
191 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||| |||||||||||||| ||| | ||||||| ||||||| ||||| |||||||| || |
|
|
| T |
29377519 |
gtaattacttgcctgagcaataatggcgatgtcaagagtatttccaaatggcaagacattggtagttgttacggagagatgaagaagctgaagctgggac |
29377420 |
T |
|
| Q |
192 |
attatattggccacaatcccttcttgtatcccacaataaatcttgattgacacttccttcccaagaaccctagcatcaacctctagaagtgatccatttc |
291 |
Q |
| |
|
||||||||| |||||||||| ||||| || ||||||| |||||||||| ||||||| ||||| ||||||||||| |||||||||| ||||||| |||||| |
|
|
| T |
29377419 |
attatattgaccacaatcccctcttgcatgccacaatgaatcttgattaacacttcattccctagaaccctagcttcaacctctacaagtgattcatttc |
29377320 |
T |
|
| Q |
292 |
ggccataacattcttcagtgttcattt |
318 |
Q |
| |
|
| || |||||||||||||| ||||||| |
|
|
| T |
29377319 |
gcccgtaacattcttcagttttcattt |
29377293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 127; Significance: 1e-65; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 88 - 318
Target Start/End: Complemental strand, 45039770 - 45039540
Alignment:
| Q |
88 |
tttggtaattacttgcctgagcaataatggtgatgtcaagagtattttcaaatggcaagacactggaacttgttacagagagatatagaagttgaagctg |
187 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| || |||||||| || |||| |||||||||||||| |
|
|
| T |
45039770 |
tttggtaattacttgccttggcaataatggtgatgtcaagagtatttccaaatggcaagacattgatacttgttatggacagatgaagaagttgaagctg |
45039671 |
T |
|
| Q |
188 |
caacattatattggccacaatcccttcttgtatcccacaataaatcttgattgacacttccttcccaagaaccctagcatcaacctctagaagtgatcca |
287 |
Q |
| |
|
||||||||||| |||||||||||||||| || |||||||||||||||||| | ||||||||| | |||| |||||| |||||||||||||||||| || |
|
|
| T |
45039670 |
ggacattatattgaccacaatcccttcttgcattccacaataaatcttgattaaaacttccttctctagaatcctagcttcaacctctagaagtgattca |
45039571 |
T |
|
| Q |
288 |
tttcggccataacattcttcagtgttcattt |
318 |
Q |
| |
|
|||| || |||||||||||||||||||||| |
|
|
| T |
45039570 |
tttctcccgtaacattcttcagtgttcattt |
45039540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 86 - 318
Target Start/End: Original strand, 45082818 - 45083050
Alignment:
| Q |
86 |
tttttggtaattacttgcctgagcaataatggtgatgtcaagagtattttcaaatggcaagacactggaacttgttacagagagatatagaagttgaagc |
185 |
Q |
| |
|
||||||||||||||||||||| |||||||| ||||||| |||||||||| |||||||||||||| ||| | |||||| ||||||| |||| ||||||| |
|
|
| T |
45082818 |
tttttggtaattacttgcctgggcaataatagtgatgttaagagtatttccaaatggcaagacattggtagttgttatggagagatgaagaatttgaagc |
45082917 |
T |
|
| Q |
186 |
tgcaacattatattggccacaatcccttcttgtatcccacaataaatcttgattgacacttccttcccaagaaccctagcatcaacctctagaagtgatc |
285 |
Q |
| |
|
||||| ||||||||| ||| |||| | | || ||||||| |||||||||| ||||||||||||| |||||||| | |||| |||| ||| || | |
|
|
| T |
45082918 |
tgcaaaattatattgaccagaatctccttttacttcccacagcgaatcttgattaacacttccttccctagaaccctcacttcaagctctggaaatgttt |
45083017 |
T |
|
| Q |
286 |
catttcggccataacattcttcagtgttcattt |
318 |
Q |
| |
|
|||| | | ||||||||||| ||||||||||| |
|
|
| T |
45083018 |
cattgtgccgataacattctttagtgttcattt |
45083050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 227 - 318
Target Start/End: Complemental strand, 45065543 - 45065452
Alignment:
| Q |
227 |
ataaatcttgattgacacttccttcccaagaaccctagcatcaacctctagaagtgatccatttcggccataacattcttcagtgttcattt |
318 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| ||||||||||||| |||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
45065543 |
ataaatcttaattgacacttccttcccaagaactctagcatcaacctttagaagtgatttatttcggccataacattcttcagtgttcattt |
45065452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University