View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3471_low_29 (Length: 314)

Name: NF3471_low_29
Description: NF3471
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3471_low_29
NF3471_low_29
[»] chr3 (4 HSPs)
chr3 (1-131)||(26519811-26519941)
chr3 (183-296)||(26519993-26520107)
chr3 (186-236)||(383364-383414)
chr3 (186-236)||(34950439-34950489)
[»] chr7 (1 HSPs)
chr7 (186-236)||(21798510-21798560)
[»] chr2 (2 HSPs)
chr2 (183-235)||(20491503-20491555)
chr2 (187-263)||(32550544-32550620)
[»] chr6 (1 HSPs)
chr6 (186-235)||(10336650-10336699)
[»] chr4 (2 HSPs)
chr4 (184-235)||(38210135-38210186)
chr4 (186-238)||(22255459-22255511)
[»] chr1 (1 HSPs)
chr1 (189-236)||(46593843-46593891)


Alignment Details
Target: chr3 (Bit Score: 98; Significance: 3e-48; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 26519811 - 26519941
Alignment:
Q  1 agtagtttactcaattgaagagtgaacagtgttaaagannnnnnnagacaatgttagcataattattatgcagttcttactattatttaaataaggatca 100  Q
    ||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||| |||||||||| |||||||||||| |||    
T  26519811 agtagtttactcaattgaagagtgaacagtgttaaagatttttttagacaatgttagcataattattatgcaattcttactatcatttaaataagggtca 26519910  T
Q  101 tgttaatcggtgctcctgggcaccggttaag 131  Q
    |||||||||||||||||||||||||||||||    
T  26519911 tgttaatcggtgctcctgggcaccggttaag 26519941  T

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Target: chr3; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 183 - 296
Target Start/End: Original strand, 26519993 - 26520107
Alignment:
Q  183 gaagagttgactacacaaatttcaatgtcatattactatatttacttccttaactgatgtcctagaggcaccgattaacattttcatttaaataatattc 282  Q
    ||||||||||||||| ||||||||||||||||||| |||||||||||| ||||| |||||||| ||| |||||||||||||||| |||||||||||||||    
T  26519993 gaagagttgactacataaatttcaatgtcatattattatatttacttctttaaccgatgtcctggagacaccgattaacattttaatttaaataatattc 26520092  T
Q  283 ag-tttggaaaagat 296  Q
    || ||||| ||||||    
T  26520093 agctttggtaaagat 26520107  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 186 - 236
Target Start/End: Complemental strand, 383414 - 383364
Alignment:
Q  186 gagttgactacacaaatttcaatgtcatattactatatttacttccttaac 236  Q
    |||||| || || ||||||||||||||||||||||||| | ||||||||||    
T  383414 gagttgtctgcataaatttcaatgtcatattactatatctgcttccttaac 383364  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 186 - 236
Target Start/End: Original strand, 34950439 - 34950489
Alignment:
Q  186 gagttgactacacaaatttcaatgtcatattactatatttacttccttaac 236  Q
    ||||||||| ||||| ||||||||| || ||||||||||| ||||||||||    
T  34950439 gagttgactgcacaagtttcaatgtgatgttactatatttgcttccttaac 34950489  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 186 - 236
Target Start/End: Complemental strand, 21798560 - 21798510
Alignment:
Q  186 gagttgactacacaaatttcaatgtcatattactatatttacttccttaac 236  Q
    ||||||||||||||| ||||||||||||||| |||||||| ||||||||||    
T  21798560 gagttgactacacaagtttcaatgtcatattgctatatttgcttccttaac 21798510  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 183 - 235
Target Start/End: Complemental strand, 20491555 - 20491503
Alignment:
Q  183 gaagagttgactacacaaatttcaatgtcatattactatatttacttccttaa 235  Q
    ||||||||||||||||||||| |||| | ||||||||||||||| ||||||||    
T  20491555 gaagagttgactacacaaattccaatattatattactatatttatttccttaa 20491503  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 187 - 263
Target Start/End: Complemental strand, 32550620 - 32550544
Alignment:
Q  187 agttgactacacaaatttcaatgtcatattactatatttacttccttaactgatgtcctagaggcaccgattaacat 263  Q
    |||||||| ||||| ||||||| | || ||||||||||| || |||||||   |||||| |||||||||||||||||    
T  32550620 agttgactgcacaagtttcaatatgatgttactatatttgctaccttaaccagtgtcctggaggcaccgattaacat 32550544  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 186 - 235
Target Start/End: Complemental strand, 10336699 - 10336650
Alignment:
Q  186 gagttgactacacaaatttcaatgtcatattactatatttacttccttaa 235  Q
    ||||||| ||||||||||| ||| |||||||||| |||||||||||||||    
T  10336699 gagttgattacacaaattttaatatcatattactctatttacttccttaa 10336650  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 184 - 235
Target Start/End: Complemental strand, 38210186 - 38210135
Alignment:
Q  184 aagagttgactacacaaatttcaatgtcatattactatatttacttccttaa 235  Q
    |||| |||||||||||||||||||| |  ||||||||||||||||| |||||    
T  38210186 aagaattgactacacaaatttcaatattttattactatatttacttgcttaa 38210135  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 238
Target Start/End: Original strand, 22255459 - 22255511
Alignment:
Q  186 gagttgactacacaaatttcaatgtcatattactatatttacttccttaactg 238  Q
    |||||| || ||||| |||||| || |||||||||||||| ||||||||||||    
T  22255459 gagttggctgcacaagtttcaacgtaatattactatatttgcttccttaactg 22255511  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 189 - 236
Target Start/End: Original strand, 46593843 - 46593891
Alignment:
Q  189 ttgactacacaaatttcaatg-tcatattactatatttacttccttaac 236  Q
    |||| |||||||||||||||| | |||||||||||||| ||||||||||    
T  46593843 ttgattacacaaatttcaatgctaatattactatatttgcttccttaac 46593891  T

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