View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3471_low_3 (Length: 570)
Name: NF3471_low_3
Description: NF3471
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3471_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 551; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 551; E-Value: 0
Query Start/End: Original strand, 1 - 559
Target Start/End: Original strand, 39982127 - 39982685
Alignment:
| Q |
1 |
tatgcggctttgatcatggaagaactagacccggatgacacaggatatatcttggtaattaaatgacagtatctaaactgtagtctccagattaaaataa |
100 |
Q |
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| T |
39982127 |
tatgcggctttgatcatggaagaactagacccggatgacacaggatatatcttggtaattaaatgacagtatctaaattgtagtctccagattaaaataa |
39982226 |
T |
|
| Q |
101 |
ctatttcaatattatagaattgtgaccttactcatttgaccatattttaacagataggcaatctcgagactctcttattacatggaccagaagagactac |
200 |
Q |
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| T |
39982227 |
ctatttcaatattatagaattgtgaccttactcatttgaccatattttaacagataggcaatctcgagactctcttattacatggaccagaagagactac |
39982326 |
T |
|
| Q |
201 |
aaggggagaaagtaagtacctgagccaaatgctaagccaaaagcttaggcctacatttgagggaaatcctattaagaggtggtatagagataccaagtac |
300 |
Q |
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| T |
39982327 |
aaggggagaaagtaagtacctgagccaaatgctaagccaaaagcttaggcctacatttgagggaaatcctattaagaggtggtatagagataccaagtac |
39982426 |
T |
|
| Q |
301 |
ttcttccaggataactggcgaagatcctgggtatttgctctgtggatttgtgtcatgttaggcctatttgcctttaaatttgtgcaatataggagaagat |
400 |
Q |
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| T |
39982427 |
ttcttccaggataactggcgaagatcctgggtatttgctctgtggattggtgtcatgttaggcctatttgcctttaaatttgtgcaatataggagaagat |
39982526 |
T |
|
| Q |
401 |
ctgcatataaagtgatggggcactgtgtgtgcatggcaaaaggggctgctgaaacacttaaattgaacatggccattatcttattgcctgtttgccgaaa |
500 |
Q |
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| T |
39982527 |
ctgcatataaagtgatggggcactgtgtgtgcatggcaaaaggggctgctgaaacacttaaattgaacatggccattatcttattgcctgtttgccgaaa |
39982626 |
T |
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| Q |
501 |
caccatcacttggctcaggaataagaccaagctaggcgcttttgttccttttgatgatg |
559 |
Q |
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| T |
39982627 |
caccatcacttggctcaggaataagaccaagctaggcgcttttgttccttttgatgatg |
39982685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 78; Significance: 5e-36; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 205 - 558
Target Start/End: Original strand, 44914329 - 44914682
Alignment:
| Q |
205 |
ggagaaagtaagtacctgagccaaatgctaagccaaaagcttaggcctacatttgagggaaatcctattaagaggtggtatagagataccaagtacttct |
304 |
Q |
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| T |
44914329 |
ggagatagtaagtacctgagccaaatgctaagcataaagcttaagggtacatatgaatacaatcctgttcggaagaggtatagagatgccatttactttc |
44914428 |
T |
|
| Q |
305 |
tccaggataactggcgaagatcctgggtatttgctctgtggatttgtgtcatgttaggcctatttgcctttaaatttgtgcaatataggagaagatctgc |
404 |
Q |
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| T |
44914429 |
tgcaggacaattggcaaagaacttggatattggtactatggattggtgttatgtgtggtctatttgcctacaaattcatgcagtacagaagaaaagatgc |
44914528 |
T |
|
| Q |
405 |
atataaagtgatggggcactgtgtgtgcatggcaaaaggggctgctgaaacacttaaattgaacatggccattatcttattgcctgtttgccgaaacacc |
504 |
Q |
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||| |||| ||||| || |||||||||||||| ||||| || ||||| ||||| |||||||||||||| |||||||| || |||||||| ||||||||| |
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| T |
44914529 |
ttatgaagtaatgggtcattgtgtgtgcatggctaaaggtgcagctgagacactcaaattgaacatggctattatcttgttacctgtttgtcgaaacacc |
44914628 |
T |
|
| Q |
505 |
atcacttggctcaggaataagaccaagctaggcgcttttgttccttttgatgat |
558 |
Q |
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| T |
44914629 |
atcacatggcttaggaacaagaccaaactaggcattgctgttccttttgatgat |
44914682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 341 - 557
Target Start/End: Original strand, 44898551 - 44898767
Alignment:
| Q |
341 |
tgtggatttgtgtcatgttaggcctatttgcctttaaatttgtgcaatataggagaagatctgcatataaagtgatggggcactgtgtgtgcatggcaaa |
440 |
Q |
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|||||||| |||| |||| || |||||||||| ||||| |||| ||||| |||| | |||||||| |||||||||| || ||||| || ||||| || |
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| T |
44898551 |
tgtggattggtgttatgtgtggtctatttgcctacaaattcatgcagtatagaagaaaagctgcatatgaagtgatgggccattgtgtctgtatggctaa |
44898650 |
T |
|
| Q |
441 |
aggggctgctgaaacacttaaattgaacatggccattatcttattgcctgtttgccgaaacaccatcacttggctcaggaataagaccaagctaggcgct |
540 |
Q |
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| T |
44898651 |
aggtgcagctgagacactcaaattgaatatggccattatcttattacctgtttgccgaaacaccgtaacctggcttagggacaagaccaagctaggcatt |
44898750 |
T |
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| Q |
541 |
tttgttccttttgatga |
557 |
Q |
| |
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| T |
44898751 |
gctgttccttttgatga |
44898767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 341 - 557
Target Start/End: Original strand, 44885223 - 44885439
Alignment:
| Q |
341 |
tgtggatttgtgtcatgttaggcctatttgcctttaaatttgtgcaatataggagaagatctgcatataaagtgatggggcactgtgtgtgcatggcaaa |
440 |
Q |
| |
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|||||||| | || |||||||| |||||||||| ||||||||||| ||| | |||| | |||| ||| | |||||||| || ||||| |||||||| || |
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| T |
44885223 |
tgtggattggagttatgttaggtctatttgcctacaaatttgtgcagtatcgaagaaaagctgcttatgaggtgatgggccattgtgtttgcatggctaa |
44885322 |
T |
|
| Q |
441 |
aggggctgctgaaacacttaaattgaacatggccattatcttattgcctgtttgccgaaacaccatcacttggctcaggaataagaccaagctaggcgct |
540 |
Q |
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||| || ||||| ||||| |||||||||||||| ||||||| || ||||||||||||||||| | || |||||||||| ||||||||||||||| | |
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| T |
44885323 |
aggtgcagctgagacactcaaattgaacatggctcttatcttgttacctgtttgccgaaacactgttacatggctcaggagcaagaccaagctaggcatt |
44885422 |
T |
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| Q |
541 |
tttgttccttttgatga |
557 |
Q |
| |
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| T |
44885423 |
gttgttccttttaatga |
44885439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 44913748 - 44913808
Alignment:
| Q |
1 |
tatgcggctttgatcatggaagaactagacccggatgacacaggatatatcttggtaatta |
61 |
Q |
| |
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||||| |||||||||||||||||||||||||| ||||| || |||| |||| ||||||||| |
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| T |
44913748 |
tatgctgctttgatcatggaagaactagaccctgatgatactggatttatcatggtaatta |
44913808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 436 - 558
Target Start/End: Complemental strand, 46562263 - 46562141
Alignment:
| Q |
436 |
gcaaaaggggctgctgaaacacttaaattgaacatggccattatcttattgcctgtttgccgaaacaccatcacttggctcaggaataagaccaagctag |
535 |
Q |
| |
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| T |
46562263 |
gcaaagggtgctgctgagactctcaagttcaacatggcattaattttaatgcctgtttgtagaaacaccatcacttggctcagaagcaagaccaaattag |
46562164 |
T |
|
| Q |
536 |
gcgcttttgttccttttgatgat |
558 |
Q |
| |
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| | | ||||||| ||||||||| |
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| T |
46562163 |
gagttgttgttccctttgatgat |
46562141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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