View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3471_low_30 (Length: 312)
Name: NF3471_low_30
Description: NF3471
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3471_low_30 |
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Alignment Details
Target: chr3 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 7 - 311
Target Start/End: Complemental strand, 26518932 - 26518629
Alignment:
| Q |
7 |
tcatagtctacggctttgttaacatcttgcgcaagcacaattaacaacatcatcaaactagtgttgatggagggtattttactaaataacatttgacaaa |
106 |
Q |
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| T |
26518932 |
tcatagcctatgactttgttaacatcctattcaagcacaattaacaacatcatcaaacgagtgttgatggagggtattt-actaaataacatttgataaa |
26518834 |
T |
|
| Q |
107 |
gttagagatatttttaaaagcgtatcacaaaatcagtagagatcaattttgtggtttactccgcactctctcatttaacaatttttaattnnnnnnntag |
206 |
Q |
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| T |
26518833 |
gttagagatatttttaaaagtgtatcacaaaatcagtagagatcaattttgtggtttactctgcactctctcatttaacaatttttaattgcaaaaatag |
26518734 |
T |
|
| Q |
207 |
taacacttccgattgatcgcatggtggtaggtgtgggattctctaatctattttgcgaacatcacattggtatataataagaaaatctatgtttatcatc |
306 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
26518733 |
taacacttccgattgattgcatggtggtaggtgtgggattctctaatctattttgcgaacatcacattggtatataataagaaaatctatgtctatcatc |
26518634 |
T |
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| Q |
307 |
ttaat |
311 |
Q |
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||||| |
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| T |
26518633 |
ttaat |
26518629 |
T |
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