View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3471_low_31 (Length: 308)
Name: NF3471_low_31
Description: NF3471
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3471_low_31 |
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Alignment Details
Target: chr3 (Bit Score: 201; Significance: 1e-109; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 64 - 297
Target Start/End: Original strand, 48302575 - 48302808
Alignment:
| Q |
64 |
tgaattgaatgtggaaatacaatgaaaaatagtgnnnnnnnccggaacatttattatcaaaactgaactctaatagatatattttatttagtcataggaa |
163 |
Q |
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| T |
48302575 |
tgaattgaatgtggaaatacaatgaaaaatagtgaaaaaaaccggaacatttattatcaaaactgaactcaaatagatatattttatttagtcataggaa |
48302674 |
T |
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| Q |
164 |
gttgaaattcagttaccgttaatcaactcaagttaacaaaccaaaattaaaaccttttcgtaataaaaacactaatataggcaaatcaaaattcattcat |
263 |
Q |
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| T |
48302675 |
gttgaaattcagttaccgttaatcaactcaagttaacaaaccaaaattaaaaccttttcgtaataaaaacactaatataggcaaatcaaaattcattcat |
48302774 |
T |
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| Q |
264 |
actgagattattacacgttactagtacatcgcat |
297 |
Q |
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| T |
48302775 |
actgagattattacacattactagtacatagcat |
48302808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 20 - 64
Target Start/End: Original strand, 48302210 - 48302254
Alignment:
| Q |
20 |
aatgataaatcttcttttgctctgtacaattccacattcaaatat |
64 |
Q |
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| T |
48302210 |
aatgataaatcttcttttgctctgtacaattccacattcaaatat |
48302254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 187 - 221
Target Start/End: Original strand, 45928340 - 45928374
Alignment:
| Q |
187 |
caactcaagttaacaaaccaaaattaaaacctttt |
221 |
Q |
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| T |
45928340 |
caactcaagttaacaaaccaaaattaaaacttttt |
45928374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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