View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3471_low_32 (Length: 305)
Name: NF3471_low_32
Description: NF3471
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3471_low_32 |
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Alignment Details
Target: chr6 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 291
Target Start/End: Complemental strand, 29007356 - 29007066
Alignment:
| Q |
1 |
ttgtgattgttcttgtgcagatgagggtcgtttgggtgttccattgattacactcgtaatcatccgagctttcgcttggtcttannnnnnngttcacctt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| |
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| T |
29007356 |
ttgtgattgttcttgtgcagatgagggtcgtttgggtgttccattgattacactcgtaatcatcttagctttcgcttggtcttctttttttgttcacctt |
29007257 |
T |
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| Q |
101 |
tcagctatcaactagctagctcacactagacagtttatttcactgatgtgggtgtttggtcatttataatgacatattgtttagtacatatagattgtga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
29007256 |
tcagctatcaactagctagctcacactagacagtttatttcactgatgtgggtgtttggtcattcataatgacatattgtttagtacatatagattgtga |
29007157 |
T |
|
| Q |
201 |
tttggtttagtgactttagtcaattgttccaaagtgagtgatgttcttgtgttgctaatgtgagaatctttgctactgtgaatttgtttgt |
291 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29007156 |
tttggtttagtgactttagtcaattgttccaaagtgagtgatgatcttgtgttgctaatgtgagaatctttgctactgtgaatttgtttgt |
29007066 |
T |
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