View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3471_low_33 (Length: 304)
Name: NF3471_low_33
Description: NF3471
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3471_low_33 |
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Alignment Details
Target: chr4 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 17 - 285
Target Start/End: Original strand, 38174358 - 38174630
Alignment:
| Q |
17 |
aaacacacgataaacaagacgttaaaaggtgcaaaaaatgaatatcttaataaaaagtgcccagtaccccca----ctatgacactatctcttctccttc |
112 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| |
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| T |
38174358 |
aaacacacaataaacaagacgttaaaaggtgcaaaaaatgaatatcttaataaaaagggcccagtacccccacccactatgacactatctcttctccttc |
38174457 |
T |
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| Q |
113 |
ctccctctttccgcactcatacacatttctctttccgtgtccctccaaacatatttttaaaacgaatcaaatcaaacattgattcattctattctataaa |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38174458 |
ctccctctttccgcactcatacacatttctctttccgtgtccctccaaacatatttttaaaacgaatcaaatcaaacattgattcattctattctataaa |
38174557 |
T |
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| Q |
213 |
taaaaccatagcactcttcataaccctacttttacataacatagcaacagggttgatttttgtgaatcaagtc |
285 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38174558 |
taaaaccatatcactcttcataaccctacttttacataacatagcaacagggttgatttttgtgaatcaagtc |
38174630 |
T |
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