View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3471_low_36 (Length: 282)
Name: NF3471_low_36
Description: NF3471
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3471_low_36 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 77 - 272
Target Start/End: Original strand, 48303130 - 48303325
Alignment:
| Q |
77 |
accgcttatcagaagcacattctcatcttcaacctgaaccttgatgtcaccagatttcaaccctggcatgtccaccacgaacacgtatgagtttggatac |
176 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48303130 |
accgcttatcagaagcacattctcatcttcaacctgaaccttgatgtcaccagatttcaaccctggcatgtccaccacgaacacgtatgagtttggatac |
48303229 |
T |
|
| Q |
177 |
tctttcacgtctgctggtgttgcagccattgcttttgcgtcgcgaacgtaggttcgtgttggtgcgtttagattcttctctgttgtgtcgtctgtg |
272 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48303230 |
tctttcacgtctgctggtgttgcagccattgcttttgcgtcgcgaacgtaggttcgtgttggtgcgtttagattcttctctgttgtgtcgtctgtg |
48303325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 78 - 166
Target Start/End: Original strand, 3744930 - 3745018
Alignment:
| Q |
78 |
ccgcttatcagaagcacattctcatcttcaacctgaaccttgatgtcaccagatttcaaccctggcatgtccaccacgaacacgtatga |
166 |
Q |
| |
|
|||||||||| |||||| || |||||||| ||||||||||| || || ||||||||||| ||||||||||| | ||||||||||||||| |
|
|
| T |
3744930 |
ccgcttatcacaagcacgttatcatcttccacctgaaccttaatatccccagatttcaatcctggcatgtcaatcacgaacacgtatga |
3745018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 82 - 190
Target Start/End: Complemental strand, 10462246 - 10462138
Alignment:
| Q |
82 |
ttatcagaagcacattctcatcttcaacctgaaccttgatgtcaccagatttcaaccctggcatgtccaccacgaacacgtatgagtttggatactcttt |
181 |
Q |
| |
|
|||||| || ||| || ||||||||||||| ||||||||| |||||||||||||| || |||| ||||| | |||| ||| |||||||| | || || || |
|
|
| T |
10462246 |
ttatcacaaccactttatcatcttcaacctcaaccttgatatcaccagatttcaatcccggcaagtccatctcgaatacgaatgagttttggtattcctt |
10462147 |
T |
|
| Q |
182 |
cacgtctgc |
190 |
Q |
| |
|
||||||||| |
|
|
| T |
10462146 |
cacgtctgc |
10462138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 82 - 190
Target Start/End: Original strand, 10539878 - 10539986
Alignment:
| Q |
82 |
ttatcagaagcacattctcatcttcaacctgaaccttgatgtcaccagatttcaaccctggcatgtccaccacgaacacgtatgagtttggatactcttt |
181 |
Q |
| |
|
|||||| || |||||| ||||||||||||| ||||||||| ||| ||||||||| || |||| || | |||||||||| |||||| |||| || || |
|
|
| T |
10539878 |
ttatcacaaccacattatcatcttcaacctcaaccttgatatcatcagatttcattcccagcatatctgtctcgaacacgtacgagttttgatattcctt |
10539977 |
T |
|
| Q |
182 |
cacgtctgc |
190 |
Q |
| |
|
||||||||| |
|
|
| T |
10539978 |
cacgtctgc |
10539986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University