View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3471_low_39 (Length: 270)
Name: NF3471_low_39
Description: NF3471
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3471_low_39 |
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Alignment Details
Target: chr4 (Bit Score: 198; Significance: 1e-108; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 52 - 261
Target Start/End: Complemental strand, 1750844 - 1750635
Alignment:
| Q |
52 |
atgttgtgttaatgtcttaccatgccaacgagaattcttatatttcttattgtgttcgctgtgaaattatgttgtttgatattgattcgagaaagttgtt |
151 |
Q |
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| T |
1750844 |
atgttgtgttaatgtcttaccatgccaacgagaattcttatatttcttattgtgttcgctgtgaaattatgttgtttgatattgattcgagaaagttgtt |
1750745 |
T |
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| Q |
152 |
gactaactattttttctattctgaattgagtgatgaattgggtttaatttggtcaagaacagaataaaatcaaatgataaaatgtattagtagccttagc |
251 |
Q |
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| T |
1750744 |
gactaactattttttctattctgaattgagtgatgagttaggtttaatttagtcaagaacagaataaaatcaaatgataaaatgtattagtagccttagc |
1750645 |
T |
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| Q |
252 |
ccttaatatt |
261 |
Q |
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| T |
1750644 |
ccttaatatt |
1750635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 68 - 160
Target Start/End: Complemental strand, 6005050 - 6004956
Alignment:
| Q |
68 |
ttaccatgccaacgagaattcttatatttcttattgtgttcgctgtgaaattatg--ttgtttgatattgattcgagaaagttgttgactaacta |
160 |
Q |
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| T |
6005050 |
ttaccatgccaacgagaaatcttgtatctcttattgtgcttgttgtgaaattatgctttggttgatatcgattctaggaagttattgagtaacta |
6004956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 43 - 104
Target Start/End: Complemental strand, 664576 - 664515
Alignment:
| Q |
43 |
aaattagtcatgttgtgttaatgtcttaccatgccaacgagaattcttatatttcttattgt |
104 |
Q |
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| T |
664576 |
aaattagacatgttgtgttaatatcttactacgccaatgagaaatcttctatttcttattgt |
664515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 123 - 168
Target Start/End: Complemental strand, 664504 - 664459
Alignment:
| Q |
123 |
ttgtttgatattgattcgagaaagttgttgactaactattttttct |
168 |
Q |
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| T |
664504 |
ttgtttgatattgattctataaagttattgactaactattgtttct |
664459 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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