View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3471_low_4 (Length: 564)
Name: NF3471_low_4
Description: NF3471
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3471_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 454; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 454; E-Value: 0
Query Start/End: Original strand, 14 - 554
Target Start/End: Complemental strand, 35905925 - 35905385
Alignment:
| Q |
14 |
tattcaacatcaagatcaatgggaaataataaagatgtcaacatgggatacaatctcacatggatgtttcaagttgatccgaattcaatgtacttaacca |
113 |
Q |
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| T |
35905925 |
tattcaacgtcaagatcaatgggaaataataaagatgtcaacatgggatacaatctcacatggatgtttcaagttgatccgaattcaatgtacttaacca |
35905826 |
T |
|
| Q |
114 |
ggttgcatttttgtgattacttttattctaaagttaatgaaattgttttcaatgtctttgtcaacaatcaaacggcgcagactggggcggatgttattgg |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35905825 |
ggttgcatttttgtgattacttttattctaaagttaatgagattgttttcaatgtctttgtcaacaatcaaacggcgcagactggggcggatgttattgg |
35905726 |
T |
|
| Q |
214 |
ttggacaggcggtaaaggagtgcctacttataaggattatgtgatttatgttcaagatcaggcaggtgatgatcaactttggcttgcattgcatccatcg |
313 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35905725 |
ttggacaggcagtaaaggagtgcctacttataaggattatgtgatttatgttcaagatcaggcaggtgatgatcaactttggcttgcattgcatccatcg |
35905626 |
T |
|
| Q |
314 |
cccgattcaaagccggaatattatgatgctatactcaatggtgttgagatattcaaactcaatgatactgatttgtctggaccaaatcctcaaccttctg |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35905625 |
cccgattcaaagccggaatattatgatgctatactcaatggtgttgagatattcaaactcaatgatactgatttgtctggaccaaatcctcaaccttctg |
35905526 |
T |
|
| Q |
414 |
atatgatgattgaacatgacaatcaggnnnnnnnnnnnnnnnnnnnnnnnnntggtcataataagagttttgttattggtggtgctgccggtggtgcggc |
513 |
Q |
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| T |
35905525 |
atatgatgattgaacatgacaatcaggaaaaaacttttcaaaacaaaaaaaatggtcataataagagttttgttattggtggtgctgccggtggtgcggc |
35905426 |
T |
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| Q |
514 |
aggttttgcaattgttgctgctatatgtgttgctgttcatc |
554 |
Q |
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| T |
35905425 |
aggttttgcaattgttgctgctatatgtgttgctgttcatc |
35905385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 76; Significance: 7e-35; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 20 - 411
Target Start/End: Original strand, 47623509 - 47623900
Alignment:
| Q |
20 |
acatcaagatcaatgggaaataataaagatgtcaacatgggatacaatctcacatggatgtttcaagttgatccgaattcaatgtacttaaccaggttgc |
119 |
Q |
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||||||||||||||||| | |||| || ||||||||||||||||| ||||| ||| | || ||||||||||| ||||| |||||| | ||||||| |
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| T |
47623509 |
acatcaagatcaatgggtaccgataaggacgtcaacatgggatacaacctcacgtgggttttccaagttgatccaaattccatgtacctcgtgaggttgc |
47623608 |
T |
|
| Q |
120 |
atttttgtgattacttttattctaaagttaatgaaattgttttcaatgtctttgtcaacaatcaaacggcgcagactggggcggatgttattggttggac |
219 |
Q |
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|||| ||||||| || |||||| || || ||||| |||||||||||| | ||| |||| || | ||||| ||| || || ||| ||||||| ||||| |
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| T |
47623609 |
atttctgtgatttctattattccaaggtcaatgagattgttttcaatatatttctcaataacaatacggcacaggctcaagctgatattattgggtggac |
47623708 |
T |
|
| Q |
220 |
aggcggtaaaggagtgcctacttataaggattatgtgatttatgttcaagatcaggcaggtgatgatcaactttggcttgcattgcatccatcgcccgat |
319 |
Q |
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||| |||||||| || | ||||| |||| |||||| | ||||| ||||| || || ||||| ||||||||||||||| | |||||| | || || |
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| T |
47623709 |
aggaggtaaaggcatgacaacttaccaggactatgtggtatatgtccaagacggggagggggatgagcaactttggcttgcactacatccagcacctgac |
47623808 |
T |
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| Q |
320 |
tcaaagccggaatattatgatgctatactcaatggtgttgagatattcaaactcaatgatactgatttgtctggaccaaatcctcaaccttc |
411 |
Q |
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||||| || | | |||||||||||||||||||| || ||||||||||| |||||||| || || |||||||| || |||||||| ||||| |
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| T |
47623809 |
tcaaaaccacagttctatgatgctatactcaatggggtggagatattcaagctcaatgacacggacttgtctggccccaatcctcagccttc |
47623900 |
T |
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