View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3471_low_41 (Length: 264)

Name: NF3471_low_41
Description: NF3471
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3471_low_41
NF3471_low_41
[»] chr8 (13 HSPs)
chr8 (17-248)||(14513034-14513265)
chr8 (41-175)||(36450693-36450821)
chr8 (102-174)||(29510233-29510304)
chr8 (114-174)||(38487157-38487217)
chr8 (56-175)||(39820436-39820548)
chr8 (101-150)||(14659659-14659708)
chr8 (108-172)||(44067580-44067644)
chr8 (14-73)||(24196632-24196691)
chr8 (50-112)||(13845235-13845297)
chr8 (124-174)||(26434249-26434299)
chr8 (41-122)||(8017478-8017559)
chr8 (101-173)||(13009423-13009494)
chr8 (103-175)||(14134748-14134819)
[»] chr4 (20 HSPs)
chr4 (39-148)||(24343497-24343606)
chr4 (56-174)||(3144587-3144704)
chr4 (108-174)||(17876219-17876285)
chr4 (100-150)||(10133754-10133804)
chr4 (79-174)||(53381530-53381625)
chr4 (56-150)||(31243500-31243600)
chr4 (38-175)||(7012055-7012198)
chr4 (114-174)||(11931350-11931410)
chr4 (41-150)||(20743230-20743345)
chr4 (102-174)||(22234819-22234890)
chr4 (42-174)||(53968539-53968671)
chr4 (87-150)||(944626-944689)
chr4 (102-173)||(30982808-30982878)
chr4 (119-173)||(3947702-3947756)
chr4 (108-150)||(18513199-18513241)
chr4 (56-150)||(19230265-19230361)
chr4 (102-155)||(20521804-20521857)
chr4 (122-174)||(2625959-2626011)
chr4 (102-174)||(23292926-23292997)
chr4 (41-85)||(32273549-32273593)
[»] chr6 (13 HSPs)
chr6 (56-174)||(34446572-34446690)
chr6 (41-150)||(17168421-17168530)
chr6 (102-173)||(33419221-33419292)
chr6 (41-174)||(34595126-34595253)
chr6 (32-91)||(10770691-10770750)
chr6 (41-112)||(19602177-19602248)
chr6 (13-111)||(6389707-6389805)
chr6 (42-91)||(7801173-7801222)
chr6 (41-174)||(16833300-16833427)
chr6 (102-174)||(24645529-24645600)
chr6 (102-174)||(28715343-28715414)
chr6 (102-174)||(32313463-32313535)
chr6 (102-142)||(33405360-33405400)
[»] chr3 (18 HSPs)
chr3 (47-140)||(25326424-25326517)
chr3 (41-177)||(25074781-25074917)
chr3 (56-143)||(12704622-12704709)
chr3 (56-174)||(21211295-21211413)
chr3 (38-134)||(14223827-14223923)
chr3 (42-150)||(25651989-25652097)
chr3 (56-174)||(52369782-52369906)
chr3 (108-172)||(24204983-24205047)
chr3 (52-126)||(25892463-25892537)
chr3 (40-108)||(15864824-15864892)
chr3 (108-155)||(26665189-26665236)
chr3 (48-135)||(27903631-27903718)
chr3 (103-173)||(37077418-37077488)
chr3 (59-149)||(51512142-51512232)
chr3 (41-150)||(10954944-10955047)
chr3 (40-85)||(28812506-28812551)
chr3 (102-174)||(14209172-14209243)
chr3 (50-174)||(21861570-21861694)
[»] chr7 (13 HSPs)
chr7 (50-150)||(7133236-7133336)
chr7 (56-150)||(5938479-5938573)
chr7 (60-148)||(23930230-23930318)
chr7 (40-174)||(38804489-38804623)
chr7 (102-175)||(598256-598328)
chr7 (11-135)||(4017767-4017891)
chr7 (56-152)||(25239654-25239755)
chr7 (41-169)||(43249985-43250118)
chr7 (102-174)||(21880200-21880271)
chr7 (102-175)||(21864856-21864928)
chr7 (91-143)||(9199402-9199454)
chr7 (56-112)||(29812660-29812716)
chr7 (50-94)||(46644701-46644745)
[»] chr5 (12 HSPs)
chr5 (56-135)||(43554528-43554607)
chr5 (41-172)||(7997108-7997233)
chr5 (77-174)||(26205694-26205791)
chr5 (38-131)||(14574027-14574119)
chr5 (102-175)||(2419914-2419987)
chr5 (78-150)||(21137718-21137788)
chr5 (41-91)||(24906318-24906368)
chr5 (56-136)||(25863211-25863291)
chr5 (102-170)||(30183608-30183675)
chr5 (126-174)||(38464313-38464361)
chr5 (58-118)||(39695989-39696049)
chr5 (102-150)||(42893408-42893455)
[»] chr2 (11 HSPs)
chr2 (102-182)||(12601133-12601213)
chr2 (41-135)||(37986771-37986865)
chr2 (32-174)||(18840953-18841089)
chr2 (108-174)||(18889519-18889585)
chr2 (56-150)||(24011043-24011137)
chr2 (56-114)||(25544488-25544546)
chr2 (59-136)||(11307970-11308053)
chr2 (56-174)||(34006930-34007043)
chr2 (50-112)||(23354648-23354710)
chr2 (108-174)||(41849354-41849420)
chr2 (102-174)||(37419802-37419873)
[»] chr1 (7 HSPs)
chr1 (56-135)||(42004920-42004999)
chr1 (77-151)||(20157307-20157381)
chr1 (57-172)||(1486646-1486760)
chr1 (102-186)||(32461381-32461464)
chr1 (102-174)||(32899938-32900010)
chr1 (56-138)||(6936370-6936452)
chr1 (102-150)||(40258897-40258944)
[»] scaffold0652 (1 HSPs)
scaffold0652 (102-173)||(403-473)
[»] scaffold0007 (1 HSPs)
scaffold0007 (108-172)||(225199-225263)
[»] scaffold0003 (1 HSPs)
scaffold0003 (102-174)||(241653-241724)


Alignment Details
Target: chr8 (Bit Score: 188; Significance: 1e-102; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 17 - 248
Target Start/End: Complemental strand, 14513265 - 14513034
Alignment:
Q  17 gacaccgaacacaatatggagaccgacacgccaacacaaataataatttgaagaaattatataattcagcgtaatcatagatgtggtgtcggtgtcagac 116  Q
    |||||||||||| ||||||||||||||||||||||| ||||||||||||||  |||||| |||||||||||||||||||||| |||||||||||||||||    
T  14513265 gacaccgaacacgatatggagaccgacacgccaacaaaaataataatttgagaaaattacataattcagcgtaatcatagatttggtgtcggtgtcagac 14513166  T
Q  117 accgacgcgtgtccgacaccaggacacacctaattcaagaattgtctgtgcttcatagcattcaattaatatgtttatttaatcatggaacaaaaagtga 216  Q
    |||||||| ||||||||||| | ||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  14513165 accgacgcatgtccgacaccggaacacacctaatccaagaattgtctgtgattcatagcattcaattaatatgtttatttaatcatggaacaaaaagtga 14513066  T
Q  217 aagtaccttggtgacaagagctagttatatct 248  Q
    ||||||||||||||||||||||||||||||||    
T  14513065 aagtaccttggtgacaagagctagttatatct 14513034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 41 - 175
Target Start/End: Complemental strand, 36450821 - 36450693
Alignment:
Q  41 gacacgccaacacaaataataatttgaagaaattatataattcagcgtaatcatagatgtggtgtcggtgtcagacaccgacgcgtgtccgacaccagga 140  Q
    |||||||| |||||| |||||||||||| |||| | | ||||||| ||||| | |      |||| |||||| ||||| |||||||||||||||||||||    
T  36450821 gacacgccgacacaactaataatttgaaaaaatcacagaattcagtgtaattacaa-----gtgtaggtgtcggacac-gacgcgtgtccgacaccagga 36450728  T
Q  141 cacacctaattcaagaattgtctgtgcttcatagc 175  Q
    ||| |||||| | || | |||||||||||||||||    
T  36450727 cacgcctaatccgaggagtgtctgtgcttcatagc 36450693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 102 - 174
Target Start/End: Complemental strand, 29510304 - 29510233
Alignment:
Q  102 gtgtcggtgtcagacaccgacgcgtgtccgacaccaggacacacctaattcaagaattgtctgtgcttcatag 174  Q
    ||||||||||| ||||| ||||||||||||||||| ||||||||||||| | || | |||| |||||||||||    
T  29510304 gtgtcggtgtcggacac-gacgcgtgtccgacaccgggacacacctaatccgaggagtgtccgtgcttcatag 29510233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 114 - 174
Target Start/End: Complemental strand, 38487217 - 38487157
Alignment:
Q  114 gacaccgacgcgtgtccgacaccaggacacacctaattcaagaattgtctgtgcttcatag 174  Q
    ||||||||||||||||||||||| |||||||| |||| | || | ||||||||||||||||    
T  38487217 gacaccgacgcgtgtccgacacccggacacacataatccgaggagtgtctgtgcttcatag 38487157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 56 - 175
Target Start/End: Original strand, 39820436 - 39820548
Alignment:
Q  56 ataataatttgaagaaattatataattcagcgtaatcatagatgtggtgtcggtgtcagacaccgacgcgtgtccgacaccaggacacacctaattcaag 155  Q
    ||||||||||||  |||| |||||||| || |||||||||| ||| |||||||      |||||||||||||||||||| | |||||| |||||| | ||    
T  39820436 ataataatttgagaaaatgatataatttagtgtaatcataggtgtcgtgtcgg------acaccgacgcgtgtccgaca-cgggacacgcctaatccgag 39820528  T
Q  156 aattgtctgtgcttcatagc 175  Q
    || |||| ||||||||||||    
T  39820529 aagtgtccgtgcttcatagc 39820548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 101 - 150
Target Start/End: Complemental strand, 14659708 - 14659659
Alignment:
Q  101 ggtgtcggtgtcagacaccgacgcgtgtccgacaccaggacacacctaat 150  Q
    ||||||||||||||||||| |||||||||| |||||  ||||||||||||    
T  14659708 ggtgtcggtgtcagacaccaacgcgtgtccaacaccgagacacacctaat 14659659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 108 - 172
Target Start/End: Original strand, 44067580 - 44067644
Alignment:
Q  108 gtgtcagacaccgacgcgtgtccgacaccaggacacacctaattcaagaattgtctgtgcttcat 172  Q
    ||||| ||||| || ||||||||||||||||||||| |||||||| || | |||| |||||||||    
T  44067580 gtgtcggacactgatgcgtgtccgacaccaggacacgcctaattcgaggagtgtccgtgcttcat 44067644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 14 - 73
Target Start/End: Complemental strand, 24196691 - 24196632
Alignment:
Q  14 acagacaccgaacacaatatggagaccgacacgccaacacaaataataatttgaagaaat 73  Q
    |||||||||||| || ||| ||| ||||||||||| |||||| |||||||||||| ||||    
T  24196691 acagacaccgaatacgatacggacaccgacacgccgacacaactaataatttgaaaaaat 24196632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 112
Target Start/End: Original strand, 13845235 - 13845297
Alignment:
Q  50 acacaaataataatttgaagaaattatataattcagcgtaatcatagatgtggtgtcggtgtc 112  Q
    ||||||||||||||||||  |||| |||||||| || |||||||||| ||| ||||| |||||    
T  13845235 acacaaataataatttgagaaaatgatataatttagagtaatcataggtgtcgtgtctgtgtc 13845297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 124 - 174
Target Start/End: Original strand, 26434249 - 26434299
Alignment:
Q  124 cgtgtccgacaccaggacacacctaattcaagaattgtctgtgcttcatag 174  Q
    ||||||| ||||||  |||||| ||||||||||| ||||||||||||||||    
T  26434249 cgtgtccaacaccaaaacacacataattcaagaagtgtctgtgcttcatag 26434299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 41 - 122
Target Start/End: Original strand, 8017478 - 8017559
Alignment:
Q  41 gacacgccaacacaaataataatttgaagaaattatataattcagcgtaatcatagatgtggtgtcggtgtcagacaccgac 122  Q
    |||| ||||||| | |||||||| |||| |||| | |||||| || |||||||||||||| ||||| ||||  |||||||||    
T  8017478 gacatgccaacatagataataatatgaaaaaatgacataattgagtgtaatcatagatgtcgtgtcagtgttggacaccgac 8017559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 101 - 173
Target Start/End: Complemental strand, 13009494 - 13009423
Alignment:
Q  101 ggtgtcggtgtcagacaccgacgcgtgtccgacaccaggacacacctaattcaagaattgtctgtgcttcata 173  Q
    ||||| |||||||||||||||||| ||||||||| | |||||| |||||| |||| |  ||| ||||||||||    
T  13009494 ggtgtaggtgtcagacaccgacgcctgtccgaca-cgggacacgcctaatccaaggagcgtccgtgcttcata 13009423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 103 - 175
Target Start/End: Original strand, 14134748 - 14134819
Alignment:
Q  103 tgtcggtgtcagacaccgacgcgtgtccgacaccaggacacacctaattcaagaattgtctgtgcttcatagc 175  Q
    ||||||||||| |||| ||| |||||||| ||||||||||| |||||||| || | |||| ||| ||||||||    
T  14134748 tgtcggtgtcaaacac-gacacgtgtccgtcaccaggacacgcctaattcgaggagtgtccgtgtttcatagc 14134819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 39 - 148
Target Start/End: Original strand, 24343497 - 24343606
Alignment:
Q  39 ccgacacgccaacacaaataataatttgaagaaattatataattcagcgtaatcatagatgtggtgtcggtgtcagacaccgacgcgtgtccgacaccag 138  Q
    |||||||||| ||||  ||||||||||||  |||||| ||||||||| ||||| |||| ||| ||||||||||| ||||||||||||||||||||||| |    
T  24343497 ccgacacgccgacacggataataatttgagaaaattacataattcagtgtaattataggtgtcgtgtcggtgtccgacaccgacgcgtgtccgacaccgg 24343596  T
Q  139 gacacaccta 148  Q
    ||||| ||||    
T  24343597 gacacgccta 24343606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 56 - 174
Target Start/End: Complemental strand, 3144704 - 3144587
Alignment:
Q  56 ataataatttgaagaaattatataattcagcgtaatcatagatgtggtgtcggtgtcagacaccgacgcgtgtccgacaccaggacacacctaattcaag 155  Q
    |||||||||| |  |||| |||||||| || |||||||||| ||| |||||||||||||||||| |||||||||| |||| | |||||||||||| | ||    
T  3144704 ataataatttcagaaaatgatataatttagtgtaatcataggtgtcgtgtcggtgtcagacaccaacgcgtgtccaacacga-gacacacctaatccgag 3144606  T
Q  156 aattgtctgtgcttcatag 174  Q
    || |||| |||||||||||    
T  3144605 aagtgtccgtgcttcatag 3144587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 108 - 174
Target Start/End: Original strand, 17876219 - 17876285
Alignment:
Q  108 gtgtcagacaccgacgcgtgtccgacaccaggacacacctaattcaagaattgtctgtgcttcatag 174  Q
    ||||||||||||||||| ||||||||||||||||||||||||| |||| | ||||||||||||||||    
T  17876219 gtgtcagacaccgacgcttgtccgacaccaggacacacctaatccaaggagtgtctgtgcttcatag 17876285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 100 - 150
Target Start/End: Original strand, 10133754 - 10133804
Alignment:
Q  100 tggtgtcggtgtcagacaccgacgcgtgtccgacaccaggacacacctaat 150  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  10133754 tggtgtcggtgtcagacactgacgcgtgtccgacaccaggacacacctaat 10133804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 79 - 174
Target Start/End: Complemental strand, 53381625 - 53381530
Alignment:
Q  79 aattcagcgtaatcatagatgtggtgtcggtgtcagacaccgacgcgtgtccgacaccaggacacacctaattcaagaattgtctgtgcttcatag 174  Q
    ||||||| ||||| ||||  || ||||||||||| ||||| ||||||| ||||||||| ||||||||||||| | || | |||| |||||||||||    
T  53381625 aattcagtgtaattataggcgtcgtgtcggtgtcggacactgacgcgtatccgacaccgggacacacctaatccgaggagtgtccgtgcttcatag 53381530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 56 - 150
Target Start/End: Complemental strand, 31243600 - 31243500
Alignment:
Q  56 ataataatttgaagaaattatataattcagcgtaatcatagatgt------ggtgtcggtgtcagacaccgacgcgtgtccgacaccaggacacacctaa 149  Q
    ||||||||||||  |||| | ||||||||| |||||||||| |||      ||||| |||||| |||||||| |||||| ||||||||||||||||||||    
T  31243600 ataataatttgagaaaatgacataattcagtgtaatcataggtgtcatgtcggtgttggtgtcggacaccgatgcgtgttcgacaccaggacacacctaa 31243501  T
Q  150 t 150  Q
    |    
T  31243500 t 31243500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 38 - 175
Target Start/End: Original strand, 7012055 - 7012198
Alignment:
Q  38 accgacacgccaacacaaataataatttgaagaaattatataattcagcgtaatcatagat------gtggtgtcggtgtcagacaccgacgcgtgtccg 131  Q
    ||||||||||| ||||  ||||||||||||  |||| | ||||||||| || ||||||| |      || ||||||||||| ||||||||||||| ||||    
T  7012055 accgacacgccgacaccgataataatttgagaaaatgacataattcagtgtgatcataggtatcggtgttgtgtcggtgtcggacaccgacgcgtatccg 7012154  T
Q  132 acaccaggacacacctaattcaagaattgtctgtgcttcatagc 175  Q
    ||||| ||  ||||||||| | || | |||| ||||||||||||    
T  7012155 acaccggggaacacctaatgcgaggagtgtccgtgcttcatagc 7012198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 114 - 174
Target Start/End: Original strand, 11931350 - 11931410
Alignment:
Q  114 gacaccgacgcgtgtccgacaccaggacacacctaattcaagaattgtctgtgcttcatag 174  Q
    ||||||||||| ||||||||||||||||||||||||| || | | |||| |||||||||||    
T  11931350 gacaccgacgcatgtccgacaccaggacacacctaatccatggagtgtccgtgcttcatag 11931410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 41 - 150
Target Start/End: Complemental strand, 20743345 - 20743230
Alignment:
Q  41 gacacgccaacacaaataataatttgaagaaattatataattcagcgtaatcatagatgtggtgtcgg------tgtcagacaccgacgcgtgtccgaca 134  Q
    |||||||| ||||  ||||||||||||  |||| | ||||||||| |||||||||| ||| |||||||      |||||||||||||| |||||||||||    
T  20743345 gacacgccgacacggataataatttgagaaaatgacataattcagtgtaatcataggtgttgtgtcggtgtcgatgtcagacaccgacacgtgtccgaca 20743246  T
Q  135 ccaggacacacctaat 150  Q
    || | ||||| |||||    
T  20743245 ccggaacacatctaat 20743230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 102 - 174
Target Start/End: Complemental strand, 22234890 - 22234819
Alignment:
Q  102 gtgtcggtgtcagacaccgacgcgtgtccgacaccaggacacacctaattcaagaattgtctgtgcttcatag 174  Q
    ||||||||||| ||||| ||| ||||||||||||||||||||| ||||| | |||| |||  |||||||||||    
T  22234890 gtgtcggtgtctgacac-gacacgtgtccgacaccaggacacagctaatccgagaagtgttcgtgcttcatag 22234819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 174
Target Start/End: Original strand, 53968539 - 53968671
Alignment:
Q  42 acacgccaacacaaataataatttgaagaaattatataattcagcgtaatcatagatgtggtgtcggtgtcagacaccgacgcgtgtccgacaccaggac 141  Q
    ||||||| | || ||||||||||| |  |||| | ||||||||| |  ||||||||||| |||||||| || || ||| ||| |||||| | ||||||||    
T  53968539 acacgccgataccaataataatttaagaaaatgacataattcagtgatatcatagatgtcgtgtcggtttccgaaaccaacgtgtgtccaaaaccaggac 53968638  T
Q  142 acacctaattcaagaattgtctgtgcttcatag 174  Q
    |||| ||||| ||| |  || ||||||||||||    
T  53968639 acacttaattgaaggagcgtatgtgcttcatag 53968671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 87 - 150
Target Start/End: Complemental strand, 944689 - 944626
Alignment:
Q  87 gtaatcatagatgtggtgtcggtgtcagacaccgacgcgtgtccgacaccaggacacacctaat 150  Q
    ||||| |||| ||| ||||| |||||  |||| ||||||||||||||||| |||||||||||||    
T  944689 gtaattataggtgtcgtgtcagtgtcgaacacagacgcgtgtccgacaccgggacacacctaat 944626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 102 - 173
Target Start/End: Complemental strand, 30982878 - 30982808
Alignment:
Q  102 gtgtcggtgtcagacaccgacgcgtgtccgacaccaggacacacctaattcaagaattgtctgtgcttcata 173  Q
    ||||||||||||||||| ||| ||||||||||||| |||||| |||||| |||  | |||| ||||||||||    
T  30982878 gtgtcggtgtcagacac-gacacgtgtccgacaccgggacacgcctaatccaaagagtgtccgtgcttcata 30982808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 119 - 173
Target Start/End: Complemental strand, 3947756 - 3947702
Alignment:
Q  119 cgacgcgtgtccgacaccaggacacacctaattcaagaattgtctgtgcttcata 173  Q
    |||| ||||||||||||||||||||||||||| | || | |||| ||||||||||    
T  3947756 cgacacgtgtccgacaccaggacacacctaatccgaggagtgtccgtgcttcata 3947702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 150
Target Start/End: Complemental strand, 18513241 - 18513199
Alignment:
Q  108 gtgtcagacaccgacgcgtgtccgacaccaggacacacctaat 150  Q
    ||||| |||||||||| ||||||||||||||||||| ||||||    
T  18513241 gtgtcggacaccgacgtgtgtccgacaccaggacacgcctaat 18513199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 56 - 150
Target Start/End: Complemental strand, 19230361 - 19230265
Alignment:
Q  56 ataataatttgaagaaattatataattcagcgtaatcatagatgtggtgt--cggtgtcagacaccgacgcgtgtccgacaccaggacacacctaat 150  Q
    ||||||||||||  |||| | ||||||||  ||||| |||| ||| ||||  ||||||||||||| || |||||| ||||| ||||||||| |||||    
T  19230361 ataataatttgagaaaataacataattcaatgtaattataggtgtcgtgtgtcggtgtcagacacggatgcgtgttcgacaacaggacacatctaat 19230265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 102 - 155
Target Start/End: Complemental strand, 20521857 - 20521804
Alignment:
Q  102 gtgtcggtgtcagacaccgacgcgtgtccgacaccaggacacacctaattcaag 155  Q
    ||||||||||| ||||||||||| ||||||| |||| ||||| |||||| ||||    
T  20521857 gtgtcggtgtcggacaccgacgcatgtccgaaaccatgacacgcctaatccaag 20521804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 122 - 174
Target Start/End: Complemental strand, 2626011 - 2625959
Alignment:
Q  122 cgcgtgtccgacaccaggacacacctaattcaagaattgtctgtgcttcatag 174  Q
    ||||||||||||| |||||||| ||||||||||| | | || |||||||||||    
T  2626011 cgcgtgtccgacatcaggacacgcctaattcaaggagtatccgtgcttcatag 2625959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 102 - 174
Target Start/End: Complemental strand, 23292997 - 23292926
Alignment:
Q  102 gtgtcggtgtcagacaccgacgcgtgtccgacaccaggacacacctaattcaagaattgtctgtgcttcatag 174  Q
    ||||||||||| ||||| ||| ||||||||||||| |||||| |||||| | || | |||| |||||||||||    
T  23292997 gtgtcggtgtcggacac-gacacgtgtccgacaccgggacacgcctaatccgaggagtgtccgtgcttcatag 23292926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 41 - 85
Target Start/End: Complemental strand, 32273593 - 32273549
Alignment:
Q  41 gacacgccaacacaaataataatttgaagaaattatataattcag 85  Q
    ||||||||||||||| |||||||||||| |||| | |||||||||    
T  32273593 gacacgccaacacaactaataatttgaaaaaataacataattcag 32273549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 51; Significance: 3e-20; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 56 - 174
Target Start/End: Original strand, 34446572 - 34446690
Alignment:
Q  56 ataataatttgaagaaattatataattcagcgtaatcatagatgtggtgtcggtgtcagacaccgacgcgtgtccgacaccaggacacacctaattcaag 155  Q
    ||||||||||||  |||| | ||||||||| |||||||||| ||| |||||||||||  |||||||||||| || |||||  ||||||||||||| ||||    
T  34446572 ataataatttgagaaaatgacataattcagtgtaatcataggtgtcgtgtcggtgtccaacaccgacgcgtatctgacactgggacacacctaatccaag 34446671  T
Q  156 aattgtctgtgcttcatag 174  Q
     | |||| |||||||||||    
T  34446672 gagtgtccgtgcttcatag 34446690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 41 - 150
Target Start/End: Complemental strand, 17168530 - 17168421
Alignment:
Q  41 gacacgccaacacaaataataatttgaagaaattatataattcagcgtaatcatagatgtggtgtcggtgtcagacaccgacgcgtgtccgacaccagga 140  Q
    |||||||||||||  ||||||||||||  |||| |||||||| || ||||| |||| ||| ||||||||||| ||||| ||| ||||||  |||| ||||    
T  17168530 gacacgccaacactgataataatttgagaaaatgatataatttagtgtaataataggtgtcgtgtcggtgtcggacactgacacgtgtctaacactagga 17168431  T
Q  141 cacacctaat 150  Q
    ||| ||||||    
T  17168430 cacccctaat 17168421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 102 - 173
Target Start/End: Original strand, 33419221 - 33419292
Alignment:
Q  102 gtgtcggtgtcagacaccgacgcgtgtccgacaccaggacacacctaattcaagaattgtctgtgcttcata 173  Q
    |||| ||||||||||||| |||||||||| |||||||||||  |||||| |||||| | | |||||||||||    
T  33419221 gtgttggtgtcagacaccaacgcgtgtccaacaccaggacatgcctaatccaagaagtatttgtgcttcata 33419292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 41 - 174
Target Start/End: Original strand, 34595126 - 34595253
Alignment:
Q  41 gacacgccaacacaaataataatttgaagaaattatataattcagcgtaatcatagatgtggtgtcggtgtcagacaccgacgcgtgtccgacaccagga 140  Q
    |||||||| |||||| |||||||||||| |||| | ||||||||| ||||| | |      ||||||||||| ||||| ||| |||||| |||||| |||    
T  34595126 gacacgccgacacaactaataatttgaaaaaatcacataattcagtgtaattacaa-----gtgtcggtgtcggacac-gacacgtgtctgacaccggga 34595219  T
Q  141 cacacctaattcaagaattgtctgtgcttcatag 174  Q
    |||||||||| | || | |||| |||||||||||    
T  34595220 cacacctaatccgaggagtgtccgtgcttcatag 34595253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 32 - 91
Target Start/End: Complemental strand, 10770750 - 10770691
Alignment:
Q  32 atggagaccgacacgccaacacaaataataatttgaagaaattatataattcagcgtaat 91  Q
    ||||| || ||||||||||||||| |||||||||||| |||| | ||||||||| |||||    
T  10770750 atggacactgacacgccaacacaactaataatttgaaaaaatcacataattcagtgtaat 10770691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 41 - 112
Target Start/End: Complemental strand, 19602248 - 19602177
Alignment:
Q  41 gacacgccaacacaaataataatttgaagaaattatataattcagcgtaatcatagatgtggtgtcggtgtc 112  Q
    ||||| |||||||  ||||||||||||  |||| ||||||||||| |||||||||| | | |||||||||||    
T  19602248 gacacaccaacactgataataatttgagaaaatgatataattcagtgtaatcataggtattgtgtcggtgtc 19602177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 111
Target Start/End: Original strand, 6389707 - 6389805
Alignment:
Q  13 cacagacaccgaacacaatatggagaccgacacgccaacacaaataataatttgaagaaattatataattcagcgtaatcatagatgtggtgtcggtgt 111  Q
    ||||||||||| |||| | | ||| ||  ||||||| ||||  ||||||||||||  |||| |||||||| || |||||||||| ||| ||||||||||    
T  6389707 cacagacaccggacacgacacggacactcacacgccgacacggataataatttgagaaaatgatataatttagtgtaatcataggtgtcgtgtcggtgt 6389805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 42 - 91
Target Start/End: Complemental strand, 7801222 - 7801173
Alignment:
Q  42 acacgccaacacaaataataatttgaagaaattatataattcagcgtaat 91  Q
    ||||||| |||||| |||||||||||| |||| | |||||||||||||||    
T  7801222 acacgccgacacaactaataatttgaaaaaatcacataattcagcgtaat 7801173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 41 - 174
Target Start/End: Original strand, 16833300 - 16833427
Alignment:
Q  41 gacacgccaacacaaataataatttgaagaaattatataattcagcgtaatcatagatgtggtgtcggtgtcagacaccgacgcgtgtccgacaccagga 140  Q
    |||||||| |||||| |||||||||||| |||| | ||| ||||| ||||| | |      |||||||||| |||||| ||| || ||||||||||||||    
T  16833300 gacacgccgacacaactaataatttgaaaaaatcacatacttcagtgtaattacaa-----gtgtcggtgttagacac-gacacgcgtccgacaccagga 16833393  T
Q  141 cacacctaattcaagaattgtctgtgcttcatag 174  Q
    |||||| ||| | || | ||||||| ||||||||    
T  16833394 cacaccgaatccgaggagtgtctgtacttcatag 16833427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 102 - 174
Target Start/End: Original strand, 24645529 - 24645600
Alignment:
Q  102 gtgtcggtgtcagacaccgacgcgtgtccgacaccaggacacacctaattcaagaattgtctgtgcttcatag 174  Q
    |||||||||||||||| |||| |||||||||||||| |||||  ||||| | |  | ||||||||||||||||    
T  24645529 gtgtcggtgtcagaca-cgacacgtgtccgacaccaagacacgtctaatccgaagagtgtctgtgcttcatag 24645600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 102 - 174
Target Start/End: Original strand, 28715343 - 28715414
Alignment:
Q  102 gtgtcggtgtcagacaccgacgcgtgtccgacaccaggacacacctaattcaagaattgtctgtgcttcatag 174  Q
    ||||||||||| ||||| ||| ||||| ||||||| |||||| |||||||| |||| |||  |||||||||||    
T  28715343 gtgtcggtgtcggacac-gacacgtgttcgacaccgggacacgcctaattcgagaagtgtacgtgcttcatag 28715414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 102 - 174
Target Start/End: Original strand, 32313463 - 32313535
Alignment:
Q  102 gtgtcggtgtcagacaccgacgcgtgtccgacaccaggacacacctaattcaagaattgtctgtgcttcatag 174  Q
    ||||||||||||||||| ||||  ||||| ||||| |||||||| |||  | |||| |||| |||||||||||    
T  32313463 gtgtcggtgtcagacactgacgtatgtccaacaccgggacacacttaacccgagaaatgtccgtgcttcatag 32313535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 102 - 142
Target Start/End: Original strand, 33405360 - 33405400
Alignment:
Q  102 gtgtcggtgtcagacaccgacgcgtgtccgacaccaggaca 142  Q
    |||| |||| ||||||||||||||||||| |||||||||||    
T  33405360 gtgttggtgccagacaccgacgcgtgtccaacaccaggaca 33405400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 47 - 140
Target Start/End: Original strand, 25326424 - 25326517
Alignment:
Q  47 ccaacacaaataataatttgaagaaattatataattcagcgtaatcatagatgtggtgtcggtgtcagacaccgacgcgtgtccgacaccagga 140  Q
    |||||||| |||||||||| || |||| |||||||| || ||||| |||||||| |||| |||||| ||||||||||||||| |||||||||||    
T  25326424 ccaacacagataataatttaaaaaaataatataatttagtgtaattatagatgtcgtgttggtgtcggacaccgacgcgtgttcgacaccagga 25326517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 41 - 177
Target Start/End: Original strand, 25074781 - 25074917
Alignment:
Q  41 gacacgccaacacaaataataatttgaagaaattatataattcagcgtaatcatagatgtggtgtcggtgtcagacaccgacgcgtgtccgacaccagga 140  Q
    |||||||| ||||  ||||||||||||  |||| | |||||| || ||||||||||  || ||||||||||| |||||| |||||||||||||||  |||    
T  25074781 gacacgccgacaccgataataatttgagaaaatgacataattgagtgtaatcataggcgttgtgtcggtgtctgacaccaacgcgtgtccgacactggga 25074880  T
Q  141 cacacctaattcaagaattgtctgtgcttcatagcat 177  Q
    |||||||||| | || | |||  ||||||||||||||    
T  25074881 cacacctaatccgaggagtgttcgtgcttcatagcat 25074917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 56 - 143
Target Start/End: Complemental strand, 12704709 - 12704622
Alignment:
Q  56 ataataatttgaagaaattatataattcagcgtaatcatagatgtggtgtcggtgtcagacaccgacgcgtgtccgacaccaggacac 143  Q
    ||||||||||||| |||| | ||||||||  |||||||||| ||| ||||||||||| |||||| |||| ||||||||||||| ||||    
T  12704709 ataataatttgaaaaaatgacataattcaatgtaatcataggtgtcgtgtcggtgtcggacaccaacgcatgtccgacaccagaacac 12704622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 56 - 174
Target Start/End: Original strand, 21211295 - 21211413
Alignment:
Q  56 ataataatttgaagaaattatataattcagcgtaatcatagatgtggtgtcggtgtcagacaccgacgcgtgtccgacaccaggacacacctaattcaag 155  Q
    ||||||||||||  |||||| ||| ||||| ||||| || | ||| ||||||||||  ||||||||||||||||||||||  |||||| |||||| | ||    
T  21211295 ataataatttgagaaaattacatagttcagtgtaattatgggtgtcgtgtcggtgttcgacaccgacgcgtgtccgacactgggacactcctaatccgag 21211394  T
Q  156 aattgtctgtgcttcatag 174  Q
     | ||| ||||||||||||    
T  21211395 gagtgtttgtgcttcatag 21211413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 38 - 134
Target Start/End: Complemental strand, 14223923 - 14223827
Alignment:
Q  38 accgacacgccaacacaaataataatttgaagaaattatataattcagcgtaatcatagatgtggtgtcggtgtcagacaccgacgcgtgtccgaca 134  Q
    ||||||||||| ||||| ||||||||||||  |||  |||||||| || ||| |||||  ||| ||||||||||| ||||||||| |||||||||||    
T  14223923 accgacacgccgacacagataataatttgagaaaacgatataatttagtgtattcataagtgtcgtgtcggtgtccgacaccgacacgtgtccgaca 14223827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 42 - 150
Target Start/End: Complemental strand, 25652097 - 25651989
Alignment:
Q  42 acacgccaacacaaataataatttgaagaaattatataattcagcgtaatcatagatgtggtgtcggtgtcagacaccgacgcgtgtccgacaccaggac 141  Q
    ||||||||||||  ||||||||||||  |||| ||||||||||| ||| | |||| ||| ||||| ||||  ||||||||| ||||| |||||||  |||    
T  25652097 acacgccaacacggataataatttgagaaaatgatataattcagtgtagttataggtgttgtgtcagtgttggacaccgacacgtgttcgacaccgagac 25651998  T
Q  142 acacctaat 150  Q
    |||||||||    
T  25651997 acacctaat 25651989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 56 - 174
Target Start/End: Original strand, 52369782 - 52369906
Alignment:
Q  56 ataataatttgaagaaattatataattcagcgtaatcatagatgtggtgtcggtgtcag------acaccgacgcgtgtccgacaccaggacacacctaa 149  Q
    ||||||||||||  |||||| ||||||||  |||||||||| ||| ||||||||||| |      |||||||||||||||| ||||| |||||||||||     
T  52369782 ataataatttgagaaaattacataattcaatgtaatcataggtgtcgtgtcggtgtcggtatcggacaccgacgcgtgtccaacaccgggacacacctat 52369881  T
Q  150 ttcaagaattgtctgtgcttcatag 174  Q
    | | || | |||| |||||||||||    
T  52369882 tccgaggagtgtccgtgcttcatag 52369906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 108 - 172
Target Start/End: Complemental strand, 24205047 - 24204983
Alignment:
Q  108 gtgtcagacaccgacgcgtgtccgacaccaggacacacctaattcaagaattgtctgtgcttcat 172  Q
    ||||| ||||| |||||||||||||||||||||||| |||||||| || | |||| |||||||||    
T  24205047 gtgtcggacactgacgcgtgtccgacaccaggacacgcctaattcgaggagtgtccgtgcttcat 24204983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 52 - 126
Target Start/End: Original strand, 25892463 - 25892537
Alignment:
Q  52 acaaataataatttgaagaaattatataattcagcgtaatcatagatgtggtgtcggtgtcagacaccgacgcgt 126  Q
    |||||||||||||| |  |||| ||||||||||| |||||||||| ||| ||||| ||||| |||||| ||||||    
T  25892463 acaaataataatttaagaaaatgatataattcagtgtaatcataggtgtcgtgtcagtgtcggacaccaacgcgt 25892537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 40 - 108
Target Start/End: Original strand, 15864824 - 15864892
Alignment:
Q  40 cgacacgccaacacaaataataatttgaagaaattatataattcagcgtaatcatagatgtggtgtcgg 108  Q
    ||||||||| ||||  ||||||||||||| |||| |||||||| || |||||||||| ||| |||||||    
T  15864824 cgacacgccgacacggataataatttgaaaaaatgatataatttagtgtaatcataggtgtcgtgtcgg 15864892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 108 - 155
Target Start/End: Original strand, 26665189 - 26665236
Alignment:
Q  108 gtgtcagacaccgacgcgtgtccgacaccaggacacacctaattcaag 155  Q
    ||||| |||||||| |||||||||||||||| |||| |||||||||||    
T  26665189 gtgtcggacaccgaagcgtgtccgacaccagaacacccctaattcaag 26665236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 48 - 135
Target Start/End: Original strand, 27903631 - 27903718
Alignment:
Q  48 caacacaaataataatttgaagaaattatataattcagcgtaatcatagatgtggtgtcggtgtcagacaccgacgcgtgtccgacac 135  Q
    ||||||| ||||||||||||  |||  |||||||| |  |||||||||  ||| ||||||||||| || ||||||||||||| |||||    
T  27903631 caacacagataataatttgagaaaacgatataatttaatgtaatcataagtgttgtgtcggtgtcggataccgacgcgtgtctgacac 27903718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 103 - 173
Target Start/End: Original strand, 37077418 - 37077488
Alignment:
Q  103 tgtcggtgtcagacaccgacgcgtgtccgacaccaggacacacctaattcaagaattgtctgtgcttcata 173  Q
    ||||||||||  |||| ||||| ||||||||||  ||||||||||||| |||| | |||| ||||||||||    
T  37077418 tgtcggtgtcgtacacggacgcatgtccgacacggggacacacctaatccaaggaatgtccgtgcttcata 37077488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 149
Target Start/End: Complemental strand, 51512232 - 51512142
Alignment:
Q  59 ataatttgaagaaattatataattcagcgtaatcatagatgtggtgtcggtgtcagacaccgacgcgtgtccgacaccaggacacacctaa 149  Q
    |||||||||  |||| | ||||||||  | |||||||  ||| |||||||||||  ||||||| ||||||| ||||||||||||| |||||    
T  51512232 ataatttgataaaatcacataattcaatggaatcatatgtgtcgtgtcggtgtcgaacaccgatgcgtgtctgacaccaggacacgcctaa 51512142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 41 - 150
Target Start/End: Original strand, 10954944 - 10955047
Alignment:
Q  41 gacacgccaacacaaataataatttgaagaaattatataattcagcgtaatcatagatgtggtgtcggtgtcagacaccgacgcgtgtccgacaccagga 140  Q
    |||||||| |||||| |||||||||||| |||| | ||||||||| ||||||| |      ||||||||||| |||| |||| ||||||||||||  |||    
T  10954944 gacacgccgacacaactaataatttgaaaaaatcacataattcagtgtaatcaca-----agtgtcggtgtcggaca-cgacacgtgtccgacactggga 10955037  T
Q  141 cacacctaat 150  Q
    ||| ||||||    
T  10955038 cacgcctaat 10955047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 40 - 85
Target Start/End: Original strand, 28812506 - 28812551
Alignment:
Q  40 cgacacgccaacacaaataataatttgaagaaattatataattcag 85  Q
    ||||||||| |||||| ||||||||||||||||| | |||||||||    
T  28812506 cgacacgccgacacaactaataatttgaagaaatcacataattcag 28812551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 102 - 174
Target Start/End: Original strand, 14209172 - 14209243
Alignment:
Q  102 gtgtcggtgtcagacaccgacgcgtgtccgacaccaggacacacctaattcaagaattgtctgtgcttcatag 174  Q
    ||||||||||| ||||| ||| ||||| ||||| | ||| ||||||||| |||||| |||| |||||||||||    
T  14209172 gtgtcggtgtcggacac-gacacgtgtacgacatcgggatacacctaatccaagaagtgtccgtgcttcatag 14209243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 50 - 174
Target Start/End: Original strand, 21861570 - 21861694
Alignment:
Q  50 acacaaataataatttgaagaaattatataattcagcgtaatcatagatgtggtgtcggtgtcagacaccgacgcgtgtccgacaccaggacacacctaa 149  Q
    ||||| |||| |||||| | |||| | ||||||||| |||||||||  ||| | || ||||||| ||||||||||||| ||  | |  ||||||||||||    
T  21861570 acacagataacaatttggaaaaatgacataattcagtgtaatcataagtgtagcgttggtgtcaaacaccgacgcgtgaccaccgcttggacacacctaa 21861669  T
Q  150 ttcaagaattgtctgtgcttcatag 174  Q
    | | || | |||| |||||||||||    
T  21861670 tccgaggagtgtccgtgcttcatag 21861694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 4e-19; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 50 - 150
Target Start/End: Complemental strand, 7133336 - 7133236
Alignment:
Q  50 acacaaataataatttgaagaaattatataattcagcgtaatcatagatgtggtgtcggtgtcagacaccgacgcgtgtccgacaccaggacacacctaa 149  Q
    ||||| || |||||||||  |||| | ||||||||| |||||||||| ||  ||||||||||| ||||||||||||||||||||||  ||||||||||||    
T  7133336 acacagatgataatttgagaaaatgacataattcagtgtaatcataggtggtgtgtcggtgtcggacaccgacgcgtgtccgacactgggacacacctaa 7133237  T
Q  150 t 150  Q
    |    
T  7133236 t 7133236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 56 - 150
Target Start/End: Original strand, 5938479 - 5938573
Alignment:
Q  56 ataataatttgaagaaattatataattcagcgtaatcatagatgtggtgtcggtgtcagacaccgacgcgtgtccgacaccaggacacacctaat 150  Q
    ||||||||||||  |||| | |||||||||  |||| |||| ||| |||||||||||||||||||| |||||||||||||| | |||||||||||    
T  5938479 ataataatttgataaaataacataattcagtataattataggtgttgtgtcggtgtcagacaccgatgcgtgtccgacaccggaacacacctaat 5938573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 60 - 148
Target Start/End: Original strand, 23930230 - 23930318
Alignment:
Q  60 taatttgaagaaattatataattcagcgtaatcatagatgtggtgtcggtgtcagacaccgacgcgtgtccgacaccaggacacaccta 148  Q
    ||||||||  |||| | ||||||||| |||||||||| ||| ||||||||||| || ||||| |||||||||||||| ||| |||||||    
T  23930230 taatttgagaaaatgacataattcagtgtaatcataggtgttgtgtcggtgtcggataccgatgcgtgtccgacaccgggatacaccta 23930318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 40 - 174
Target Start/End: Complemental strand, 38804623 - 38804489
Alignment:
Q  40 cgacacgccaacacaaataataatttgaagaaattatataattcagcgtaatcatagatgtggtgtcggtgtcagacaccgacgcgtgtccgacaccagg 139  Q
    ||||||||| ||||  |||||||||| |  |||| | ||||| ||| |||||||||| ||| |||| |||||| |||||||||| ||||||||| || ||    
T  38804623 cgacacgccgacacggataataatttcagaaaatgacataatccagggtaatcataggtgtcgtgttggtgtcggacaccgacgtgtgtccgacgccggg 38804524  T
Q  140 acacacctaattcaagaattgtctgtgcttcatag 174  Q
    |||  |||||| | || | ||| ||||||||||||    
T  38804523 acatgcctaatccgaggagtgtatgtgcttcatag 38804489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 102 - 175
Target Start/End: Original strand, 598256 - 598328
Alignment:
Q  102 gtgtcggtgtcagacaccgacgcgtgtccgacaccaggacacacctaattcaagaattgtctgtgcttcatagc 175  Q
    ||||||||||||||||| ||| ||||||||||||| |||||| |||||| | |||| |||| ||||||||||||    
T  598256 gtgtcggtgtcagacac-gacacgtgtccgacaccgggacacgcctaatccgagaagtgtccgtgcttcatagc 598328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 11 - 135
Target Start/End: Complemental strand, 4017891 - 4017767
Alignment:
Q  11 agcacagacaccgaacacaatatggagaccgacacgccaacacaaataataatttgaagaaattatataattcagcgtaatcatagatgtggtgtcggtg 110  Q
    ||||||||||| | |||| | | ||| ||||||||||| ||||  ||||||||||||  |||  |||||||| || |||||||||  ||| |||| ||||    
T  4017891 agcacagacactggacacgacacggacaccgacacgccgacacggataataatttgagaaaacgatataatttagtgtaatcataagtgtcgtgttggtg 4017792  T
Q  111 tcagacaccgacgcgtgtccgacac 135  Q
    || |||||||||| ||||| |||||    
T  4017791 tcggacaccgacgtgtgtctgacac 4017767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 56 - 152
Target Start/End: Complemental strand, 25239755 - 25239654
Alignment:
Q  56 ataataatttgaagaaattatataattcagcgtaatcatag-----atgtggtgtcggtgtcagacaccgacgcgtgtccgacaccaggacacacctaat 150  Q
    ||||||||||||  ||||| ||||| |||| ||||| ||||     |||| ||||||||||| ||||  |||| ||||||||||||||||||| ||||||    
T  25239755 ataataatttgagaaaattttataactcagtgtaattataggtgtcatgttgtgtcggtgtcggacattgacgtgtgtccgacaccaggacacccctaat 25239656  T
Q  151 tc 152  Q
    ||    
T  25239655 tc 25239654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 41 - 169
Target Start/End: Original strand, 43249985 - 43250118
Alignment:
Q  41 gacacgccaacacaaataataatttgaagaaattatataattcagcgtaatcatagatgtggtgtcggtgtca-----gacaccgacgcgtgtccgacac 135  Q
    |||||||| ||||  ||||||||||||  |||| | ||||| ||| ||||| |||  ||| |||||||||||      ||||| ||||||||||||||||    
T  43249985 gacacgccgacacggataataatttgagaaaatgacataatacagtgtaattataagtgtcgtgtcggtgtcgcgtcggacactgacgcgtgtccgacac 43250084  T
Q  136 caggacacacctaattcaagaattgtctgtgctt 169  Q
    |||||||| |||||||| || | |||| ||||||    
T  43250085 caggacacgcctaattcgaggagtgtccgtgctt 43250118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 102 - 174
Target Start/End: Original strand, 21880200 - 21880271
Alignment:
Q  102 gtgtcggtgtcagacaccgacgcgtgtccgacaccaggacacacctaattcaagaattgtctgtgcttcatag 174  Q
    ||||||||||| ||||| ||| | |||||||||||||||||| |||||| | |||| |||| |||||||||||    
T  21880200 gtgtcggtgtcggacac-gacacatgtccgacaccaggacacgcctaatccgagaagtgtccgtgcttcatag 21880271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 102 - 175
Target Start/End: Original strand, 21864856 - 21864928
Alignment:
Q  102 gtgtcggtgtcagacaccgacgcgtgtccgacaccaggacacacctaattcaagaattgtctgtgcttcatagc 175  Q
    |||||| |||| ||||| ||| ||||||||||||| ||||||  ||||||| || | |||||||||||||||||    
T  21864856 gtgtcgctgtcggacac-gacacgtgtccgacaccgggacacgtctaattcgaggagtgtctgtgcttcatagc 21864928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 91 - 143
Target Start/End: Complemental strand, 9199454 - 9199402
Alignment:
Q  91 tcatagatgtggtgtcggtgtcagacaccgacgcgtgtccgacaccaggacac 143  Q
    |||||||||| ||||||||||| |||| |||  ||||| ||||||||||||||    
T  9199454 tcatagatgttgtgtcggtgtcggacatcgatacgtgttcgacaccaggacac 9199402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 56 - 112
Target Start/End: Complemental strand, 29812716 - 29812660
Alignment:
Q  56 ataataatttgaagaaattatataattcagcgtaatcatagatgtggtgtcggtgtc 112  Q
    ||||||||||||  |||| |||||||| || |||||||||| ||| |||||||||||    
T  29812716 ataataatttgagaaaatgatataatttagtgtaatcataggtgtcgtgtcggtgtc 29812660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 50 - 94
Target Start/End: Complemental strand, 46644745 - 46644701
Alignment:
Q  50 acacaaataataatttgaagaaattatataattcagcgtaatcat 94  Q
    |||| |||||||||||||| ||||||||||||| || ||||||||    
T  46644745 acaccaataataatttgaaaaaattatataatttagtgtaatcat 46644701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 56 - 135
Target Start/End: Original strand, 43554528 - 43554607
Alignment:
Q  56 ataataatttgaagaaattatataattcagcgtaatcatagatgtggtgtcggtgtcagacaccgacgcgtgtccgacac 135  Q
    ||||||||||||  |||| |||||||| || |||||||||| ||| ||||||||||| ||||||||||||||||||||||    
T  43554528 ataataatttgagaaaatgatataatttagtgtaatcataggtgtcgtgtcggtgtcggacaccgacgcgtgtccgacac 43554607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 41 - 172
Target Start/End: Complemental strand, 7997233 - 7997108
Alignment:
Q  41 gacacgccaacacaaataataatttgaagaaattatataattcagcgtaatcatagatgtggtgtcggtgtcagacaccgacgcgtgtccgacaccagga 140  Q
    |||||||||||||  ||||||||||||  |||| ||||||| ||| ||||| |||  ||| |||||||      |||| ||||||||||||||| |||||    
T  7997233 gacacgccaacacggataataatttgagaaaatgatataatacagtgtaattataagtgtcgtgtcgg------acactgacgcgtgtccgacatcagga 7997140  T
Q  141 cacacctaattcaagaattgtctgtgcttcat 172  Q
    |||||||||||| |||| ||| ||||||||||    
T  7997139 cacacctaattcgagaagtgtttgtgcttcat 7997108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 77 - 174
Target Start/End: Complemental strand, 26205791 - 26205694
Alignment:
Q  77 ataattcagcgtaatcatagatgtggtgtcggtgtcagacaccgacgcgtgtccgacaccaggacacacctaattcaagaattgtctgtgcttcatag 174  Q
    ||||||||| |||||||||| ||| |||| |||||| |||||| |||||| ||||||||| |||||||| |||| ||| |  |||| |||||||||||    
T  26205791 ataattcagtgtaatcataggtgtcgtgttggtgtcggacaccaacgcgtatccgacaccgggacacacgtaatccaaaaggtgtccgtgcttcatag 26205694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 38 - 131
Target Start/End: Complemental strand, 14574119 - 14574027
Alignment:
Q  38 accgacacgccaacacaaataataatttgaagaaattatataattcagcgtaatcatagatgtggtgtcggtgtcagacaccgacgcgtgtccg 131  Q
    ||||||||||| |||| | ||||||||||| ||||| ||||||||||| ||||| |||| | | ||||| ||||| ||| ||||||||||||||    
T  14574119 accgacacgccgacacgagtaataatttgatgaaatgatataattcagtgtaattataggt-tcgtgtcagtgtcggacgccgacgcgtgtccg 14574027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 102 - 175
Target Start/End: Original strand, 2419914 - 2419987
Alignment:
Q  102 gtgtcggtgtcagacaccgacgcgtgtccgacaccaggacacacctaattcaagaattgtctgtgcttcatagc 175  Q
    |||| ||||||||||||||| ||||||||||| || ||||||||||||| | |  | |||| ||||||||||||    
T  2419914 gtgttggtgtcagacaccgatgcgtgtccgaccccgggacacacctaatccgatgagtgtccgtgcttcatagc 2419987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 78 - 150
Target Start/End: Original strand, 21137718 - 21137788
Alignment:
Q  78 taattcagcgtaatcatagatgtggtgtcggtgtcagacaccgacgcgtgtccgacaccaggacacacctaat 150  Q
    |||||||| | |||||||| ||| ||||||||  | |||||| |||||||||||||||| |||||||||||||    
T  21137718 taattcagtgaaatcataggtgtcgtgtcggt--cggacaccaacgcgtgtccgacaccgggacacacctaat 21137788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 91
Target Start/End: Complemental strand, 24906368 - 24906318
Alignment:
Q  41 gacacgccaacacaaataataatttgaagaaattatataattcagcgtaat 91  Q
    |||||||||||||| ||||||||||||| |||| | ||||||||| |||||    
T  24906368 gacacgccaacacagataataatttgaaaaaatgacataattcagtgtaat 24906318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 56 - 136
Target Start/End: Original strand, 25863211 - 25863291
Alignment:
Q  56 ataataatttgaagaaattatataattcagcgtaatcatagatgtggtgtcggtgtcagacaccgacgcgtgtccgacacc 136  Q
    ||||||||||||  |||| ||||||||||| ||||| |||  ||| ||||| ||||| | |||||| ||||||| ||||||    
T  25863211 ataataatttgagaaaatgatataattcagtgtaattataagtgtcgtgtcagtgtcgggcaccgatgcgtgtctgacacc 25863291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 102 - 170
Target Start/End: Original strand, 30183608 - 30183675
Alignment:
Q  102 gtgtcggtgtcagacaccgacgcgtgtccgacaccaggacacacctaattcaagaattgtctgtgcttc 170  Q
    |||| ||| |||||||| ||| ||||||||||||  |||||| |||||||| |||| ||||||||||||    
T  30183608 gtgttggtatcagacac-gacacgtgtccgacactgggacacgcctaattcgagaagtgtctgtgcttc 30183675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 126 - 174
Target Start/End: Complemental strand, 38464361 - 38464313
Alignment:
Q  126 tgtccgacaccaggacacacctaattcaagaattgtctgtgcttcatag 174  Q
    ||||||||||| ||||||||||||| | || | ||||||||||||||||    
T  38464361 tgtccgacaccgggacacacctaatccgaggagtgtctgtgcttcatag 38464313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 58 - 118
Target Start/End: Complemental strand, 39696049 - 39695989
Alignment:
Q  58 aataatttgaagaaattatataattcagcgtaatcatagatgtggtgtcggtgtcagacac 118  Q
    ||||||||||  |||| |||||||| || |||||||||| ||| ||||||||||| |||||    
T  39696049 aataatttgagaaaatgatataatttagtgtaatcataggtgtcgtgtcggtgtccgacac 39695989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 102 - 150
Target Start/End: Original strand, 42893408 - 42893455
Alignment:
Q  102 gtgtcggtgtcagacaccgacgcgtgtccgacaccaggacacacctaat 150  Q
    |||||||||||||||||  || |||||||||||||||||||| ||||||    
T  42893408 gtgtcggtgtcagacaca-acacgtgtccgacaccaggacacgcctaat 42893455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 102 - 182
Target Start/End: Complemental strand, 12601213 - 12601133
Alignment:
Q  102 gtgtcggtgtcagacaccgacgcgtgtccgacaccaggacacacctaattcaagaattgtctgtgcttcatagcattcaat 182  Q
    ||||| |||||| |||||||||||||||| |||||| |||||||||||||| || | ||||||| ||||||||||| ||||    
T  12601213 gtgtcagtgtcaaacaccgacgcgtgtccaacaccaagacacacctaattcgaggagtgtctgtacttcatagcatgcaat 12601133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 41 - 135
Target Start/End: Original strand, 37986771 - 37986865
Alignment:
Q  41 gacacgccaacacaaataataatttgaagaaattatataattcagcgtaatcatagatgtggtgtcggtgtcagacaccgacgcgtgtccgacac 135  Q
    |||||||| ||||| ||||||||||||| |||| ||||| || || |||||||||| | | |||| |||||| |||||||||| ||||| |||||    
T  37986771 gacacgccgacacagataataatttgaaaaaatgatatatttgagtgtaatcataggtatcgtgttggtgtcggacaccgacgagtgtctgacac 37986865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 32 - 174
Target Start/End: Complemental strand, 18841089 - 18840953
Alignment:
Q  32 atggagaccgacacgccaacacaaataataatttgaagaaattatataattcagcgtaatcatagatgtggtgtcggtgtcagacaccgacgcgtgtccg 131  Q
    ||||| || |||||||  |||||| |||||||||||| |||||| |||||| || ||||| | |      ||||||||||||||||| ||| | ||||||    
T  18841089 atggacactgacacgctgacacaactaataatttgaaaaaattacataattaagtgtaattacaa-----gtgtcggtgtcagacac-gacacatgtccg 18840996  T
Q  132 acaccaggacacacctaattcaagaattgtctgtgcttcatag 174  Q
    ||||| ||||||||||||| | || | |||| |||||||||||    
T  18840995 acaccgggacacacctaatccgaggagtgtccgtgcttcatag 18840953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 108 - 174
Target Start/End: Complemental strand, 18889585 - 18889519
Alignment:
Q  108 gtgtcagacaccgacgcgtgtccgacaccaggacacacctaattcaagaattgtctgtgcttcatag 174  Q
    ||||| ||||||||||| ||||||||||| ||||||||||||  |||| | ||||| ||||||||||    
T  18889585 gtgtcggacaccgacgcatgtccgacacccggacacacctaacccaagtagtgtctctgcttcatag 18889519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 56 - 150
Target Start/End: Original strand, 24011043 - 24011137
Alignment:
Q  56 ataataatttgaagaaattatataattcagcgtaatcatagatgtggtgtcggtgtcagacaccgacgcgtgtccgacaccaggacacacctaat 150  Q
    ||||||||||||  |||| | |||||| || |||||||||| ||| | ||||||||| || || || ||||||||||||||| ||||||| ||||    
T  24011043 ataataatttgagaaaatgacataatttagtgtaatcataggtgtcgcgtcggtgtctgatacggatgcgtgtccgacaccaagacacacataat 24011137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 56 - 114
Target Start/End: Original strand, 25544488 - 25544546
Alignment:
Q  56 ataataatttgaagaaattatataattcagcgtaatcatagatgtggtgtcggtgtcag 114  Q
    ||||||||||||  |||| ||||||||||| |||||||||| ||| |||||||||||||    
T  25544488 ataataatttgagaaaatgatataattcagtgtaatcataggtgtcgtgtcggtgtcag 25544546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 59 - 136
Target Start/End: Complemental strand, 11308053 - 11307970
Alignment:
Q  59 ataatttgaagaaattatataattcagcgtaatcatagatgtggtgtcggtgtc------agacaccgacgcgtgtccgacacc 136  Q
    |||||||||| |||| | ||||||||| |||||||||| ||| |||||||||||       |||||||||||||||||||||||    
T  11308053 ataatttgaaaaaatgacataattcagtgtaatcataggtgtcgtgtcggtgtcggtgttggacaccgacgcgtgtccgacacc 11307970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 56 - 174
Target Start/End: Complemental strand, 34007043 - 34006930
Alignment:
Q  56 ataataatttgaagaaatt-atataattcagcgtaatcatagatgtggtgtcggtgtcagacaccgacgcgtgtccgacaccaggacacacctaattcaa 154  Q
    |||||||||||| |||||| | ||||||||| ||||||||||     ||||||||||  |||||| |  |||||| |||||| | |||||||||||||||    
T  34007043 ataataatttga-gaaattgacataattcagtgtaatcatag-----gtgtcggtgtgggacacctattcgtgtctgacaccggaacacacctaattcaa 34006950  T
Q  155 gaattgtctgtgcttcatag 174  Q
    | | |||| |||||||||||    
T  34006949 ggagtgtccgtgcttcatag 34006930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 112
Target Start/End: Complemental strand, 23354710 - 23354648
Alignment:
Q  50 acacaaataataatttgaagaaattatataattcagcgtaatcatagatgtggtgtcggtgtc 112  Q
    ||||| ||||||||||||  |||| |||||||| || |||||||||| ||| |||||||||||    
T  23354710 acacagataataatttgagaaaatgatataatttagtgtaatcataggtgtcgtgtcggtgtc 23354648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 174
Target Start/End: Original strand, 41849354 - 41849420
Alignment:
Q  108 gtgtcagacaccgacgcgtgtccgacaccaggacacacctaattcaagaattgtctgtgcttcatag 174  Q
    ||||| |||||||||||||||| ||||||  ||||| |||||||| |||  |||| |||||||||||    
T  41849354 gtgtcggacaccgacgcgtgtctgacaccgcgacacgcctaattctagaggtgtccgtgcttcatag 41849420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 102 - 174
Target Start/End: Original strand, 37419802 - 37419873
Alignment:
Q  102 gtgtcggtgtcagacaccgacgcgtgtccgacaccaggacacacctaattcaagaattgtctgtgcttcatag 174  Q
    ||||||||||| ||||| || |||||||||||||| |||||| |||||| | || | |||| |||||||||||    
T  37419802 gtgtcggtgtcggacac-gatgcgtgtccgacaccgggacacgcctaatccgaggagtgtccgtgcttcatag 37419873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 56 - 135
Target Start/End: Complemental strand, 42004999 - 42004920
Alignment:
Q  56 ataataatttgaagaaattatataattcagcgtaatcatagatgtggtgtcggtgtcagacaccgacgcgtgtccgacac 135  Q
    ||||||||||||  |||| | |||||| || |||||||||| ||| ||||||||||| ||||||||||| ||||||||||    
T  42004999 ataataatttgagaaaatgacataatttagtgtaatcataggtgttgtgtcggtgtcggacaccgacgcatgtccgacac 42004920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 77 - 151
Target Start/End: Complemental strand, 20157381 - 20157307
Alignment:
Q  77 ataattcagcgtaatcatagatgt-ggtgtcggtgtcagacaccgacgcgtgtccgacaccaggacacacctaatt 151  Q
    ||||||||| |||||||||  ||| ||||||| |||| |||||||||||||||||||||||  |||||||||||||    
T  20157381 ataattcagtgtaatcatatgtgtcggtgtcg-tgtccgacaccgacgcgtgtccgacaccgagacacacctaatt 20157307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 57 - 172
Target Start/End: Complemental strand, 1486760 - 1486646
Alignment:
Q  57 taataatttgaagaaattatataattcagcgtaatcatagatgt-ggtgtcggtgtcagacaccgacgcgtgtccgacaccaggacacacctaattcaag 155  Q
    |||||||||||| |||| | ||||||||| ||||| |||  ||| ||||||| |||| ||||| ||| ||||||||||||| |||||| |||||| | ||    
T  1486760 taataatttgaaaaaatcacataattcagtgtaattataagtgtcggtgtcg-tgtcggacac-gacacgtgtccgacaccgggacacgcctaatccgag 1486663  T
Q  156 aattgtctgtgcttcat 172  Q
     | ||||||||||||||    
T  1486662 gagtgtctgtgcttcat 1486646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 102 - 186
Target Start/End: Complemental strand, 32461464 - 32461381
Alignment:
Q  102 gtgtcggtgtcagacaccgacgcgtgtccgacaccaggacacacctaattcaagaattgtctgtgcttcatagcattcaattaat 186  Q
    ||||||||||| ||||| ||| |||||| |||||  |||||| |||||| |||||| |||| |||||||||||||| ||| ||||    
T  32461464 gtgtcggtgtcggacac-gacacgtgtctgacactgggacacgcctaatccaagaagtgtccgtgcttcatagcatacaactaat 32461381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 102 - 174
Target Start/End: Original strand, 32899938 - 32900010
Alignment:
Q  102 gtgtcggtgtcagacaccgacgcgtgtccgacaccaggacacacctaattcaagaattgtctgtgcttcatag 174  Q
    ||||||||||| ||||||||||| |||| |||||| |||||| |||||| | || ||||||  ||||||||||    
T  32899938 gtgtcggtgtcggacaccgacgcatgtcggacaccgggacacccctaatccgaggattgtccttgcttcatag 32900010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 138
Target Start/End: Complemental strand, 6936452 - 6936370
Alignment:
Q  56 ataataatttgaagaaattatataattcagcgtaatcatagatgtggtgtcggtgtcagacaccgacgcgtgtccgacaccag 138  Q
    |||||||| |||  |||| | |||||| || |||||||||| ||| ||||| ||||| ||||||||||| | |||||||||||    
T  6936452 ataataatctgagaaaatgacataattaagtgtaatcataggtgtcgtgtctgtgtcggacaccgacgcatatccgacaccag 6936370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 102 - 150
Target Start/End: Complemental strand, 40258944 - 40258897
Alignment:
Q  102 gtgtcggtgtcagacaccgacgcgtgtccgacaccaggacacacctaat 150  Q
    ||||||||||||||||| ||| | |||||||||||||||||| ||||||    
T  40258944 gtgtcggtgtcagacac-gacacctgtccgacaccaggacacgcctaat 40258897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0652 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0652
Description:

Target: scaffold0652; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 102 - 173
Target Start/End: Complemental strand, 473 - 403
Alignment:
Q  102 gtgtcggtgtcagacaccgacgcgtgtccgacaccaggacacacctaattcaagaattgtctgtgcttcata 173  Q
    ||||||||||| ||||| ||||||||||||||||| ||||||||||||| | || | |||| ||||||||||    
T  473 gtgtcggtgtcggacac-gacgcgtgtccgacaccgggacacacctaatccgaggagtgtccgtgcttcata 403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 108 - 172
Target Start/End: Complemental strand, 225263 - 225199
Alignment:
Q  108 gtgtcagacaccgacgcgtgtccgacaccaggacacacctaattcaagaattgtctgtgcttcat 172  Q
    ||||| ||||| ||||||||| |||||||||||||| |||||||| || | |||| |||||||||    
T  225263 gtgtcggacactgacgcgtgttcgacaccaggacacgcctaattcgaggagtgtccgtgcttcat 225199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 102 - 174
Target Start/End: Original strand, 241653 - 241724
Alignment:
Q  102 gtgtcggtgtcagacaccgacgcgtgtccgacaccaggacacacctaattcaagaattgtctgtgcttcatag 174  Q
    |||| |||||| ||||| ||| ||||||||||||| |||||| |||||| | |||| |||| |||||||||||    
T  241653 gtgttggtgtcggacac-gacacgtgtccgacaccgggacacgcctaatccgagaagtgtccgtgcttcatag 241724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University