View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3471_low_43 (Length: 261)
Name: NF3471_low_43
Description: NF3471
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3471_low_43 |
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Alignment Details
Target: chr2 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 251
Target Start/End: Original strand, 4971955 - 4972205
Alignment:
| Q |
1 |
caagatcaaggaaatttcagacttctctttaaatcacaacttgatgatgattgttcatcatctctgacaacattatttgcctgcatcaatagaatgtttg |
100 |
Q |
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| T |
4971955 |
caagatcaaggaaatttcagacttctctttaaatcacaacttgatgatgattgttcatcatctctgacaacattatttgcctgcatcaatagaaagtttg |
4972054 |
T |
|
| Q |
101 |
gtcactggtaagcaaatcttcattttttcctcagcaagtaaccttggaaattttattgcatgtttaagcaaatcttgctgtgacaacttcatcatttgtt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4972055 |
gtcactggtaagcaaatcttcattttttcctcagcaagtaaccttggaaatttcattgcatgtttaagcaaatcttgctgtgacaacttcatcatttgtt |
4972154 |
T |
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| Q |
201 |
gcatttttatcttgttaagaaagtatgcatattactagtttgtaatctctg |
251 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
4972155 |
gcatttttatcttgttaagaaagtatgcatatgactagtttgtaatctctg |
4972205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 251
Target Start/End: Original strand, 4989863 - 4990113
Alignment:
| Q |
1 |
caagatcaaggaaatttcagacttctctttaaatcacaacttgatgatgattgttcatcatctctgacaacattatttgcctgcatcaatagaatgtttg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
4989863 |
caagatcaaggaaatttcagacttctctttaaatcacaacttgatgatgattgttcatcatctctgacaacattatttgcctgcatcaatagaaagtttg |
4989962 |
T |
|
| Q |
101 |
gtcactggtaagcaaatcttcattttttcctcagcaagtaaccttggaaattttattgcatgtttaagcaaatcttgctgtgacaacttcatcatttgtt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4989963 |
gtcactggtaagcaaatcttcattttttcctcagcaagtaaccttggaaatttcattgcatgtttaagcaaatcttgctgtgacaacttcatcatttgtt |
4990062 |
T |
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| Q |
201 |
gcatttttatcttgttaagaaagtatgcatattactagtttgtaatctctg |
251 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
4990063 |
gcatttttatcttgttaagaaagtatgcatatgactagtttgtaatctctg |
4990113 |
T |
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