View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3471_low_48 (Length: 253)
Name: NF3471_low_48
Description: NF3471
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3471_low_48 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 156; Significance: 6e-83; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 17 - 243
Target Start/End: Complemental strand, 32281861 - 32281629
Alignment:
| Q |
17 |
atttgattaatggaaagtaggtttaacattaattatatggaagatggaaaagnnnnnnnna--aaacgtggggcaattagttgtagtttgagagagaaat |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32281861 |
atttgattaatggaaagtaggtttaacattaattctatggaagatggaaaagtttttttttttaaacgtggggcaattagttgtagtttgagagagaaat |
32281762 |
T |
|
| Q |
115 |
ttcaaattcaaacacagacatatatataa--cacatgcagatatggtcatgggaaagagctgacggtggaagctattaaatgccataataagataacc-- |
210 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32281761 |
ttcaaattcaaacacagacatatatatatagcacatgcagatatgggcatgggaaagagctgacggtggaagctattaaatgccataataagataaccat |
32281662 |
T |
|
| Q |
211 |
atgtaaatgcatcggctgacttcaagatctgtg |
243 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| |
|
|
| T |
32281661 |
atgtacatgcatcggctgacttcaagatctgtg |
32281629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 152; Significance: 1e-80; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 17 - 243
Target Start/End: Complemental strand, 15701096 - 15700864
Alignment:
| Q |
17 |
atttgattaatggaaagtaggtttaacattaattatatggaagatggaaaagnnnnnnnna--aaacgtggggcaattagttgtagtttgagagagaaat |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15701096 |
atttgattaatggaaagtaggtttaacattaattctatggaagatggaaaagtttttttttttaaacgtggggcaattagttgtagtttgagagagaaat |
15700997 |
T |
|
| Q |
115 |
ttcaaattcaaacacagacatatatataa--cacatgcagatatggtcatgggaaagagctgacggtggaagctattaaatgccataataagataacc-- |
210 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15700996 |
ttcaaattcaaacacagacatatatatatagcacatgcagatatgggcatgggaaagagctgacggtggaagctattaaatgccataataagataaccat |
15700897 |
T |
|
| Q |
211 |
atgtaaatgcatcggctgacttcaagatctgtg |
243 |
Q |
| |
|
|| || ||||||||||||||||||||||||||| |
|
|
| T |
15700896 |
atttacatgcatcggctgacttcaagatctgtg |
15700864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University