View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3471_low_54 (Length: 249)
Name: NF3471_low_54
Description: NF3471
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3471_low_54 |
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Alignment Details
Target: chr7 (Bit Score: 123; Significance: 3e-63; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 12 - 174
Target Start/End: Original strand, 38984510 - 38984671
Alignment:
| Q |
12 |
catcatcacccgttccaaaaagggtatttcaaagccaaaagttttagaaccttagttgtccagggaatgtcttcttttgctcctgtgtaaaagggtttca |
111 |
Q |
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| T |
38984510 |
catcatcacccgttccaaaaagggtatttcaaaaccaaaagttttagacccttagttgtc-agggaatgtcttcttttgctcctgtgtaaaagggcttca |
38984608 |
T |
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| Q |
112 |
gcaggaaaaagaataataggttgcaacaagctaacagtacaaacacaaatggaattcaaactc |
174 |
Q |
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| T |
38984609 |
gcaggtaaaagaataataggttgcaacatgctaatagtacaatcacaattggaattcaaactc |
38984671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 12 - 211
Target Start/End: Original strand, 10582937 - 10583134
Alignment:
| Q |
12 |
catcatcacccgttccaaaaagggtatttcaaagccaaaagttttagaaccttagttgtccagggaatgtcttcttttgctcctgtgtaaaagggtttca |
111 |
Q |
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|||||||||||||||||||| ||||||||| || ||||||||||| |||||||||||||| ||||||||||||| || |||||||||||||||||||||| |
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| T |
10582937 |
catcatcacccgttccaaaatgggtatttccaaaccaaaagttttggaaccttagttgtctagggaatgtcttccttcgctcctgtgtaaaagggtttca |
10583036 |
T |
|
| Q |
112 |
gcaggaaaaagaataataggttgcaacaagctaacagtacaaacacaaatggaattcaaactcatttttaaaaagagtttcccaaagacatcgccaagta |
211 |
Q |
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| T |
10583037 |
gcag--aaaaaaagaataggctgcagcaatctaaaggtacaaacacaaatggcgttcaaactcattctaaaaaggaggttcccatagacatcaccaagta |
10583134 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 12 - 121
Target Start/End: Original strand, 356911 - 357020
Alignment:
| Q |
12 |
catcatcacccgttccaaaaagggtatttcaaagccaaaagttttagaaccttagttgtccagggaatgtcttcttttgctcctgtgtaaaagggtttca |
111 |
Q |
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| T |
356911 |
catcaacacccgttccaaagagggtatttccaaaccaaaagttttggaacattagttatctagggaatgtcttccttcgctcctgtgtaaaagggtttca |
357010 |
T |
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| Q |
112 |
gcaggaaaaa |
121 |
Q |
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| || ||||| |
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| T |
357011 |
gaagaaaaaa |
357020 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 70; Significance: 1e-31; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 12 - 89
Target Start/End: Complemental strand, 50249232 - 50249155
Alignment:
| Q |
12 |
catcatcacccgttccaaaaagggtatttcaaagccaaaagttttagaaccttagttgtccagggaatgtcttctttt |
89 |
Q |
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| T |
50249232 |
catcatcacccgttccaaaaagggtatttcaaaaccaaaagttttagaaccttagttgtctagggaatgtcttctttt |
50249155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 12 - 120
Target Start/End: Original strand, 16465542 - 16465650
Alignment:
| Q |
12 |
catcatcacccgttccaaaaagggtatttcaaagccaaaagttttagaaccttagttgtccagggaatgtcttcttttgctcctgtgtaaaagggtttca |
111 |
Q |
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||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| | || |||||| ||||||| || ||| ||||||||||||| |
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| T |
16465542 |
catcatcactcgttccaaaaagggtatttcaaaaccaaaagttttagaaccttagttggctagtaaatgtcctcttttgttcttgtataaaagggtttca |
16465641 |
T |
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| Q |
112 |
gcaggaaaa |
120 |
Q |
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||||||||| |
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| T |
16465642 |
gcaggaaaa |
16465650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 117 - 174
Target Start/End: Complemental strand, 50248405 - 50248348
Alignment:
| Q |
117 |
aaaaagaataataggttgcaacaagctaacagtacaaacacaaatggaattcaaactc |
174 |
Q |
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|||||||| ||||| |||||||| ||||| ||||||| |||||||||||| |||||| |
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| T |
50248405 |
aaaaagaagtataggctgcaacaatctaacggtacaaatacaaatggaatttaaactc |
50248348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 101 - 167
Target Start/End: Complemental strand, 6762618 - 6762552
Alignment:
| Q |
101 |
aaagggtttcagcaggaaaaagaataataggttgcaacaagctaacagtacaaacacaaatggaatt |
167 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| |
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| T |
6762618 |
aaagggtttcagcaggaaaaagaagaataggttgcaacaagctaacggtacaaacacaaatggaatt |
6762552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 12 - 67
Target Start/End: Complemental strand, 1265451 - 1265396
Alignment:
| Q |
12 |
catcatcacccgttccaaaaagggtatttcaaagccaaaagttttagaaccttagt |
67 |
Q |
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||||||||||||||| ||||| || ||| |||| ||||||||||||||||| |||| |
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| T |
1265451 |
catcatcacccgttctaaaaacggcattacaaaaccaaaagttttagaaccgtagt |
1265396 |
T |
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