View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3471_low_55 (Length: 248)
Name: NF3471_low_55
Description: NF3471
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3471_low_55 |
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| [»] chr6 (4 HSPs) |
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| [»] scaffold0024 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 231; Significance: 1e-128; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 231; E-Value: 1e-128
Query Start/End: Original strand, 18 - 248
Target Start/End: Original strand, 6935727 - 6935957
Alignment:
| Q |
18 |
gaaaagacaccaatgcttcggattttgtccttgtggcgaagttccaaaaagagaaagcatgctcgctatactcagctgtgaaagaacaatcttgtatgca |
117 |
Q |
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| T |
6935727 |
gaaaagacaccaatgcttcggattttgtccttgtggcgaagttccaaaaagagaaagcatgctcgctatactcagctgtgaaagaacaatcttgtatgca |
6935826 |
T |
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| Q |
118 |
gaccaatccattgcatgaaccaacaatcctaccagcgtccttgtaatagaattggttggaagggacggcaagggtgatagaattcgaagtaccctccatc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6935827 |
gaccaatccattgcatgaaccaacaatcctaccagcgtccttgtaatagaattggttggaagggacggcaagggtgatagaattcgaagtaccctccatc |
6935926 |
T |
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| Q |
218 |
aaactagagatgggcacgaccttacattctc |
248 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
6935927 |
aaactagagatgggcacgaccttacattctc |
6935957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 18 - 200
Target Start/End: Original strand, 6948395 - 6948577
Alignment:
| Q |
18 |
gaaaagacaccaatgcttcggattttgtccttgtggcgaagttccaaaaagagaaagcatgctcgctatactcagctgtgaaagaacaatcttgtatgca |
117 |
Q |
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||||||||||||||| ||| ||||||||||||||||| |||||||||||||| | || || ||||||||| ||||||||| ||||||||||||| |
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| T |
6948395 |
gaaaagacaccaatgtttcagattttgtccttgtggcaggattccaaaaagagaatgagtgttcatgatactcagcggtgaaagaagaatcttgtatgca |
6948494 |
T |
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| Q |
118 |
gaccaatccattgcatgaaccaacaatcctaccagcgtccttgtaatagaattggttggaagggacggcaagggtgatagaat |
200 |
Q |
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| T |
6948495 |
gaccaatccattgcatgaaccaacaaccctaccagcgtccttgtaagggaattggtggtaaggatcggtaagggtgagagaat |
6948577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 18 - 248
Target Start/End: Original strand, 6921868 - 6922095
Alignment:
| Q |
18 |
gaaaagacaccaatgcttcggattttgtccttgtggcgaagttccaaaaagagaaagcatgctcgctatactcagctgtgaaagaacaatcttgtatgca |
117 |
Q |
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||||||||||||||| ||| ||||||||||||||||| ||||| |||||||| | || ||| |||||| || |||| |||||||||| ||||| |
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| T |
6921868 |
gaaaagacaccaatgtttcagattttgtccttgtggcaggattccagaaagagaacgagtgttcgtgatactccgc---gaaataacaatcttgcatgca |
6921964 |
T |
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| Q |
118 |
gaccaatccattgcatgaaccaacaatcctaccagcgtccttgtaatagaattggttggaagggacggcaagggtgatagaattcgaagtaccctccatc |
217 |
Q |
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|||||||||||||||||||||||||| ||||||||| ||||||||| ||||||||| | | || ||| |||||| ||||||| || ||| ||||| | |
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| T |
6921965 |
gaccaatccattgcatgaaccaacaaccctaccagcatccttgtaaaagaattggtggtatggatcggtaagggttatagaatgtgagttactctccagc |
6922064 |
T |
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| Q |
218 |
aaactagagatgggcacgaccttacattctc |
248 |
Q |
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|||| |||||||||||| || ||||||||| |
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| T |
6922065 |
aaacgagagatgggcactgccctacattctc |
6922095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 18 - 140
Target Start/End: Original strand, 6955031 - 6955153
Alignment:
| Q |
18 |
gaaaagacaccaatgcttcggattttgtccttgtggcgaagttccaaaaagagaaagcatgctcgctatactcagctgtgaaagaacaatcttgtatgca |
117 |
Q |
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||||||||| |||||||| || |||||||||||||| ||||||||||||||| | ||||| ||| ||||| ||||||||||||||||| ||||| |
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| T |
6955031 |
gaaaagacaataatgcttcagactttgtccttgtggcagggttccaaaaagagaacgagtgctcctgatattcagcagtgaaagaacaatcttgcatgca |
6955130 |
T |
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| Q |
118 |
gaccaatccattgcatgaaccaa |
140 |
Q |
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|||||| ||||| |||||||||| |
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| T |
6955131 |
gaccaacccattacatgaaccaa |
6955153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 87; Significance: 8e-42; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 18 - 200
Target Start/End: Original strand, 1986473 - 1986655
Alignment:
| Q |
18 |
gaaaagacaccaatgcttcggattttgtccttgtggcgaagttccaaaaagagaaagcatgctcgctatactcagctgtgaaagaacaatcttgtatgca |
117 |
Q |
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||||||||||||||||||| ||||||||||||||| |||||||||||||| | || | | ||||||||| ||||||||||||||||| || || |
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| T |
1986473 |
gaaaagacaccaatgcttcatattttgtccttgtggaaggattccaaaaagagaacgagtgtttgtgatactcagcagtgaaagaacaatcttgaataca |
1986572 |
T |
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| Q |
118 |
gaccaatccattgcatgaaccaacaatcctaccagcgtccttgtaatagaattggttggaagggacggcaagggtgatagaat |
200 |
Q |
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| T |
1986573 |
gaccaatccattgcatgaaccaacaaccctaccagcgtccttgtaaaagaattggtggtaaggatcggtaagggtgatagaat |
1986655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 20 - 169
Target Start/End: Original strand, 15572427 - 15572576
Alignment:
| Q |
20 |
aaagacaccaatgcttcggattttgtccttgtggcgaagttccaaaaagagaaagcatgctcgctatactcagctgtgaaagaacaatcttgtatgcaga |
119 |
Q |
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||||| || |||| ||| |||||| ||||||||||| |||||| ||| |||| | | ||| |||||||||| | |||||||||| ||| | ||||| |
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| T |
15572427 |
aaagagactaatgtttcagattttttccttgtggcggggttccagaaacagaaggagtagtcggtatactcagcagcgaaagaacaactttgcaagcaga |
15572526 |
T |
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| Q |
120 |
ccaatccattgcatgaaccaacaatcctaccagcgtccttgtaatagaat |
169 |
Q |
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| T |
15572527 |
ccaatccattgcatgaaccaacaaccccaccaccgtccttgaaattgaat |
15572576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 144
Target Start/End: Original strand, 18515463 - 18515491
Alignment:
| Q |
116 |
cagaccaatccattgcatgaaccaacaat |
144 |
Q |
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| T |
18515463 |
cagaccaatccattgcatgaaccaacaat |
18515491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 152 - 231
Target Start/End: Complemental strand, 161333 - 161254
Alignment:
| Q |
152 |
gcgtccttgtaatagaattggttggaagggacggcaagggtgatagaattcgaagtaccctccatcaaactagagatggg |
231 |
Q |
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| T |
161333 |
gcgtccttgtaattgaattggtggtaaggatcagtaagggtgatagaactcgaagaacactccatcaaacgagagatggg |
161254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 84 - 144
Target Start/End: Complemental strand, 14514353 - 14514293
Alignment:
| Q |
84 |
tatactcagctgtgaaagaacaatcttgtatgcagaccaatccattgcatgaaccaacaat |
144 |
Q |
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| T |
14514353 |
tatacttagcagtgaaagaacaaccatgcaagcagatcaatccattgcatgaaccaacaat |
14514293 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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