View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3471_low_56 (Length: 248)
Name: NF3471_low_56
Description: NF3471
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3471_low_56 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 38715737 - 38715977
Alignment:
| Q |
1 |
tcatccataatttcgtctggagtgtttggattaacgatgagattaacaaaataaggtaaaccaccataatttcgtcaaaaattatatcgtaattttgtcg |
100 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38715737 |
tcatccataatttcgtctgaagtgtttggattaacgatgagattaacaaaataaggtaaaccaccataatttcgtcaaaaattatatcgtaattttgtcg |
38715836 |
T |
|
| Q |
101 |
atgttatggttaaaccaaacatacaataaatccataataaatgtatattcagaataataagtgaacttcagagcagaatctaccttacctgagctcaaac |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
38715837 |
atgttatggttaaaccaaacatacaataaatccataataaatgtatattcagaataataagtgaacttcagagcagaatctaccttacatgagctcaaac |
38715936 |
T |
|
| Q |
201 |
agaaggagcagaaggatcattttcacctcattctctctctg |
241 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
38715937 |
agaaggagcaaaaggatcattttcacctcattctctctctg |
38715977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University