View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3471_low_57 (Length: 248)
Name: NF3471_low_57
Description: NF3471
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3471_low_57 |
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Alignment Details
Target: chr6 (Bit Score: 234; Significance: 1e-129; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 33170822 - 33171063
Alignment:
| Q |
1 |
aaacaaactctcataattagatggtcaattagggttggactcaccttgagctttcttgcaatttcaaagtaagttttgtcaactggaacccaaaaagcag |
100 |
Q |
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| T |
33170822 |
aaacaaacactcataatgagatggtcaattagggttggactcaccttgagctttcttgcaatttcaaagtaagttttgtcaactggaacccaaaaagcag |
33170921 |
T |
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| Q |
101 |
gctgccaaacttcaggagttccatcaataggaaaaattctctctggttgataccaaaccttgttcaacagattatcctctaatttgtaatgttttgtgta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33170922 |
gctgccaaacttcaggagttccatcaataggaaaaattctctctggttgataccaaaccttgttcaacagattatcctctaatttgtaatgttttgtgta |
33171021 |
T |
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| Q |
201 |
gttattgtaattggcaaacttaagatagcccaattctgtgct |
242 |
Q |
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| T |
33171022 |
gttattgtaattggcaaacttaagatagcccaattctgtgct |
33171063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 32 - 241
Target Start/End: Original strand, 33155163 - 33155372
Alignment:
| Q |
32 |
gggttggactcaccttgagctttcttgcaatttcaaagtaagttttgtcaactggaacccaaaaagcaggctgccaaacttcaggagttccatcaatagg |
131 |
Q |
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| T |
33155163 |
gggttgaactcaccttgagctttcttgcaatttcaaagtaagttttgtcaactggaacccaaaaaacaggctgccaaacttcaggagttccatcaacagg |
33155262 |
T |
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| Q |
132 |
aaaaattctctctggttgataccaaaccttgttcaacagattatcctctaatttgtaatgttttgtgtagttattgtaattggcaaacttaagatagccc |
231 |
Q |
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| T |
33155263 |
aaaaattctctctggttgataccaaaccttgttcaacaaattttcctctgatttggaatgttttgtgtagttattgtaattcgaaaacttaagatagccc |
33155362 |
T |
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| Q |
232 |
aattctgtgc |
241 |
Q |
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|||||||||| |
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| T |
33155363 |
aattctgtgc |
33155372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 40 - 242
Target Start/End: Original strand, 33145026 - 33145228
Alignment:
| Q |
40 |
ctcaccttgagctttcttgcaatttcaaagtaagttttgtcaactggaacccaaaaagcaggctgccaaacttcaggagttccatcaataggaaaaattc |
139 |
Q |
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||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||||||| | ||| |||||||||| |||||||| | |||||||||| |
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| T |
33145026 |
ctcaccttgagttttcttgcgatttcgaagtaagttttgtcaactggaacccaaaaagcatgttgcaaaacttcaggtgttccatccacaggaaaaattt |
33145125 |
T |
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| Q |
140 |
tctctggttgataccaaaccttgttcaacagattatcctctaatttgtaatgttttgtgtagttattgtaattggcaaacttaagatagcccaattctgt |
239 |
Q |
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|||||||||||||||||||||| |||| ||||| ||| || |||| |||| |||||||||||||||||||||| |||||||||||| || |||||| | |
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| T |
33145126 |
cctctggttgataccaaaccttgctcaaaagattttccactgattttgaatgctttgtgtagttattgtaattggaaaacttaagataaccaaattcttt |
33145225 |
T |
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| Q |
240 |
gct |
242 |
Q |
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||| |
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| T |
33145226 |
gct |
33145228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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