View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3471_low_59 (Length: 246)
Name: NF3471_low_59
Description: NF3471
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3471_low_59 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 21 - 246
Target Start/End: Original strand, 3446639 - 3446864
Alignment:
| Q |
21 |
ccctagttcactaaaaaagaaatcacatatatatatttttaatggattgcaaaagtgaatatttgtcctaaatttcatataatcttttacgtaagggaat |
120 |
Q |
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| T |
3446639 |
ccctagtttactaaaaaagaaatcacatatatatctttttaatggattgcaaaagtgaatatttgtcctaaatttcatataatcttttacgtaagggaat |
3446738 |
T |
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| Q |
121 |
tttcaagccatgttgaatcagattaaattcctcatcaaatgttcttctcaagatacacaccaacatggcgcatttaannnnnnnatttaagattctattc |
220 |
Q |
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| T |
3446739 |
ctccaagccatgttgaatcagattaaattcctcatcaaatgttcttctcaagatacacaccaacatggcgcatttaatttttttatttaagattctattc |
3446838 |
T |
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| Q |
221 |
attttatcaattttgcttggaggttc |
246 |
Q |
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| T |
3446839 |
attttatcaattttgcttggaggttc |
3446864 |
T |
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