View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3471_low_6 (Length: 476)
Name: NF3471_low_6
Description: NF3471
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3471_low_6 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 434; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 12 - 461
Target Start/End: Complemental strand, 2487397 - 2486948
Alignment:
| Q |
12 |
catcatcaataaaacttttctcctataaaacttattaataaaacccaatcaaggttgaataatcatgtattgcaagattaacgacgaatattcttattat |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2487397 |
catcatcaataaaacttttctcctataaaacttattaataaaacccaatcaaggttgaataatcatgtattgcaagattaacgacgaatattcttattat |
2487298 |
T |
|
| Q |
112 |
gaagtaaaagttctccaccctgagtagaaaatgctcatcgatttgtaccttgattctcctctcgttgtggaaagagtgcaaatgaaccaaataggtcaga |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2487297 |
gaagtaaaagttctccaccctgagtagaaaatgctcatcgatttgtaccttgattctcttctcgttgtggaaagagtgcaaatgaaccaaataggtcaga |
2487198 |
T |
|
| Q |
212 |
taaccgcgccaaagctgtctctgaggtagaccttgtgaaggactgcaatcagagacaacggtaaaagaacatcggaagccagaatatcaggtcaagcaag |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2487197 |
taaccgcgccaaagctgtctctgaggtagaccttgtgaaggactgcaatcagagacaacggtaaaagaacatcggaagccagaatatcaggtcaagcaag |
2487098 |
T |
|
| Q |
312 |
aacaccatgcaaatctatgatgtttaaagtaaaagtaataaaagataaaataggaaaaacttacagtttcgcaattggaagaaccatatctactttgaat |
411 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
2487097 |
aacaccatgcaaatctatgatgtttaaagtaaaagtaataaaagataaaataggaaaaacttacagtttcacaattggaagaaccatatctactttgaat |
2486998 |
T |
|
| Q |
412 |
ctgcaaagataacaaccaaccattatgcgcatgacaaacataagaaattt |
461 |
Q |
| |
|
|||||||||||||||||| |||||||| |||||||||||||||||||||| |
|
|
| T |
2486997 |
ctgcaaagataacaaccagccattatgtgcatgacaaacataagaaattt |
2486948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University