View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3471_low_60 (Length: 246)

Name: NF3471_low_60
Description: NF3471
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3471_low_60
NF3471_low_60
[»] scaffold1678 (1 HSPs)
scaffold1678 (100-239)||(1090-1229)
[»] scaffold0786 (1 HSPs)
scaffold0786 (104-246)||(3264-3406)
[»] chr2 (6 HSPs)
chr2 (104-246)||(22139326-22139468)
chr2 (101-246)||(32241460-32241603)
chr2 (100-242)||(32295008-32295150)
chr2 (100-246)||(24433820-24433959)
chr2 (100-175)||(32276212-32276288)
chr2 (100-175)||(32302743-32302819)
[»] scaffold0390 (2 HSPs)
scaffold0390 (104-246)||(1796-1938)
scaffold0390 (104-246)||(14780-14922)


Alignment Details
Target: scaffold1678 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: scaffold1678
Description:

Target: scaffold1678; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 100 - 239
Target Start/End: Original strand, 1090 - 1229
Alignment:
Q  100 ccccttgtaatgaaaaacaatgtgatactacaaagtcttatgtaggagcatgcaagaatcttggtccaatcgtttgtgtgtggtaattaactaattatgg 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1090 ccccttgtaatgaaaaacaatgtgatactacaaagtcttatgtaggagcatgcaagaatcttggtccaatcgtttgtgtgtggtaattaactaattatgg 1189  T
Q  200 agtttgttataattggaatgagaaagacttgctcatattt 239  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  1190 agtttgttataattggaatgagaaagacttgctcatattt 1229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0786 (Bit Score: 115; Significance: 2e-58; HSPs: 1)
Name: scaffold0786
Description:

Target: scaffold0786; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 104 - 246
Target Start/End: Complemental strand, 3406 - 3264
Alignment:
Q  104 ttgtaatgaaaaacaatgtgatactacaaagtcttatgtaggagcatgcaagaatcttggtccaatcgtttgtgtgtggtaattaactaattatggagtt 203  Q
    |||| |||||||||||||||||||||| ||| ||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  3406 ttgtgatgaaaaacaatgtgatactaccaagacttatataggagcatgcaataatcttggtccaatcgtttgtgtgtggtaattaactaattatggagtt 3307  T
Q  204 tgttataattggaatgagaaagacttgctcatattttgatttt 246  Q
    ||||||| ||||||||||||| |||||||||||||||||||||    
T  3306 tgttatatttggaatgagaaacacttgctcatattttgatttt 3264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 115; Significance: 2e-58; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 104 - 246
Target Start/End: Original strand, 22139326 - 22139468
Alignment:
Q  104 ttgtaatgaaaaacaatgtgatactacaaagtcttatgtaggagcatgcaagaatcttggtccaatcgtttgtgtgtggtaattaactaattatggagtt 203  Q
    |||| |||||||||||||||||||||| ||| ||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  22139326 ttgtgatgaaaaacaatgtgatactaccaagacttatataggagcatgcaataatcttggtccaatcgtttgtgtgtggtaattaactaattatggagtt 22139425  T
Q  204 tgttataattggaatgagaaagacttgctcatattttgatttt 246  Q
    ||||||| ||||||||||||| |||||||||||||||||||||    
T  22139426 tgttatatttggaatgagaaacacttgctcatattttgatttt 22139468  T

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Target: chr2; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 101 - 246
Target Start/End: Original strand, 32241460 - 32241603
Alignment:
Q  101 cccttgtaatgaaaaacaatgtgatactacaaagtcttatgtaggagcatgcaagaatcttggtccaatcgtttgtgtgtggtaattaactaattatgga 200  Q
    ||||||| |||||||||||||||||||||| ||  ||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  32241460 cccttgtgatgaaaaacaatgtgatactaccaa--cttatataggagcatgcaataatcttggtccaatcgtttgtgtgtggtaattaactaattatgga 32241557  T
Q  201 gtttgttataattggaatgagaaagacttgctcatattttgatttt 246  Q
    |||||||||| |||||||||||||||||||||||||||||||||||    
T  32241558 gtttgttatatttggaatgagaaagacttgctcatattttgatttt 32241603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 100 - 242
Target Start/End: Complemental strand, 32295150 - 32295008
Alignment:
Q  100 ccccttgtaatgaaaaacaatgtgatactacaaagtcttatgtaggagcatgcaagaatcttggtccaatcgtttgtgtgtggtaattaactaattatgg 199  Q
    |||||||| ||||||||||||| |||| ||| ||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  32295150 ccccttgtgatgaaaaacaatgggatattaccaagtcttatataggagcatgcaataatcttggtccaatcgtttgtgtgtggtaattaactaattatgg 32295051  T
Q  200 agtttgttataattggaatgagaaagacttgctcatattttga 242  Q
    | ||||||||| |||||||||||||||||||||||||||||||    
T  32295050 attttgttatatttggaatgagaaagacttgctcatattttga 32295008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 100 - 246
Target Start/End: Original strand, 24433820 - 24433959
Alignment:
Q  100 ccccttgtaatgaaaaacaatgtgatactacaaagtcttatgtaggagcatgcaagaatcttggtccaatcgtttgtgtgtggtaattaactaattatgg 199  Q
    |||||||| |||||||||||||||||||||| ||| ||||| |       ||||| ||||||||||||||||||||||||||||||||||| ||||||||    
T  24433820 ccccttgtgatgaaaaacaatgtgatactaccaagacttatat-------tgcaataatcttggtccaatcgtttgtgtgtggtaattaacaaattatgg 24433912  T
Q  200 agtttgttataattggaatgagaaagacttgctcatattttgatttt 246  Q
    ||||| ||||| || |||| ||||||| |||||||||||||||||||    
T  24433913 agttttttatatttagaatcagaaagatttgctcatattttgatttt 24433959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 100 - 175
Target Start/End: Complemental strand, 32276288 - 32276212
Alignment:
Q  100 ccccttgtaatgaaaaacaatgtgatactacaaagtc-ttatgtaggagcatgcaagaatcttggtccaatcgtttg 175  Q
    |||||||| |||||||||||||||||||||| ||||| |||| |||||||||||||||  |||| ||||||||||||    
T  32276288 ccccttgtgatgaaaaacaatgtgatactaccaagtctttatataggagcatgcaagagccttgatccaatcgtttg 32276212  T

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Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 100 - 175
Target Start/End: Complemental strand, 32302819 - 32302743
Alignment:
Q  100 ccccttgtaatgaaaaacaatgtgatactacaaagtc-ttatgtaggagcatgcaagaatcttggtccaatcgtttg 175  Q
    |||||||| ||||||||||||| |||||||| ||||| |||| |||||||||||||||   ||||||||||||||||    
T  32302819 ccccttgtgatgaaaaacaatgggatactaccaagtctttatataggagcatgcaagagctttggtccaatcgtttg 32302743  T

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Target: scaffold0390 (Bit Score: 111; Significance: 4e-56; HSPs: 2)
Name: scaffold0390
Description:

Target: scaffold0390; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 104 - 246
Target Start/End: Complemental strand, 1938 - 1796
Alignment:
Q  104 ttgtaatgaaaaacaatgtgatactacaaagtcttatgtaggagcatgcaagaatcttggtccaatcgtttgtgtgtggtaattaactaattatggagtt 203  Q
    |||| |||||||||||||||||||||| ||| ||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  1938 ttgtgatgaaaaacaatgtgatactaccaagacttatataggagcatgcaataatcttggtccaatcgtttgtgtgtggtaattaactaattatggagtt 1839  T
Q  204 tgttataattggaatgagaaagacttgctcatattttgatttt 246  Q
    ||||||| ||||||||||||| | |||||||||||||||||||    
T  1838 tgttatatttggaatgagaaacatttgctcatattttgatttt 1796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0390; HSP #2
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 104 - 246
Target Start/End: Complemental strand, 14922 - 14780
Alignment:
Q  104 ttgtaatgaaaaacaatgtgatactacaaagtcttatgtaggagcatgcaagaatcttggtccaatcgtttgtgtgtggtaattaactaattatggagtt 203  Q
    |||| |||||||||||||| ||||||| ||| ||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||    
T  14922 ttgtgatgaaaaacaatgtcatactaccaagacttatataggagcatgcaataatcttggtccaatcgtttgtgtgtggtaattaactaattatggattt 14823  T
Q  204 tgttataattggaatgagaaagacttgctcatattttgatttt 246  Q
    ||||||| ||||||||||||| |||||||||||||||||||||    
T  14822 tgttatatttggaatgagaaacacttgctcatattttgatttt 14780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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