View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3471_low_61 (Length: 246)
Name: NF3471_low_61
Description: NF3471
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3471_low_61 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 48302824 - 48303069
Alignment:
| Q |
1 |
caaaagacacaaaaccattgccacaaacgcacaaacagactacaataaaaaagcagacatagcccttattctccaaacattgattctttctcaagcaacc |
100 |
Q |
| |
|
||||||||| ||||||||||||||| |||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
48302824 |
caaaagacaaaaaaccattgccacacacgcacaaacagactaaaacaaaaaagcagacatagcccttattctccaaacattgattcattctcaagcaacc |
48302923 |
T |
|
| Q |
101 |
ttaacctgaatagttttaggcttcttaggttcaggaggaggcaacttattaacagtaacagtaagaacaccatcttgacaaagagcagaaacaccacctt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
48302924 |
ttaacctgaatagttttaggcttcttaggttcaggaggaggcaacttattaacagtaacagtaagaacaccatcttgacaaacagcagaaacaccacctt |
48303023 |
T |
|
| Q |
201 |
caacatcagcattctctggtaacacaaatttcctcataaacttacc |
246 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48303024 |
caacatcagcattctctggtaacacaaatttcctcataaacttacc |
48303069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 91 - 246
Target Start/End: Original strand, 3744713 - 3744865
Alignment:
| Q |
91 |
tcaagcaaccttaacctgaatagttttaggcttcttaggttcaggaggaggcaacttattaacagtaacagtaagaacaccatcttgacaaagagcagaa |
190 |
Q |
| |
|
||||||||||| ||||||||| ||| |||| |||||||| | |||||||||||| || | |||||||||| | ||||| ||||||||||||| ||||||| |
|
|
| T |
3744713 |
tcaagcaacctgaacctgaatggttctaggtttcttaggctgaggaggaggcaatttctgaacagtaacactcagaaccccatcttgacaaacagcagaa |
3744812 |
T |
|
| Q |
191 |
acaccaccttcaacatcagcattctctggtaacacaaatttcctcataaacttacc |
246 |
Q |
| |
|
||| || ||| || ||||||||| || | |||||||||||||||||||||||| |
|
|
| T |
3744813 |
acagca---tcagtattagcattctcaggaagcacaaatttcctcataaacttacc |
3744865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University