View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3471_low_64 (Length: 239)
Name: NF3471_low_64
Description: NF3471
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3471_low_64 |
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Alignment Details
Target: chr4 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 22 - 223
Target Start/End: Original strand, 52981801 - 52982002
Alignment:
| Q |
22 |
tactccccaaactcgaccccagagcatcaatcctactccagctaaccaagatcttgcaattattaaaaatgattagtttagtaaacatagcggaacaaaa |
121 |
Q |
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| T |
52981801 |
tactccccaaactcgaccccaaagcatcaatcctactccagctaaccaagatcttgcaattattaaaaatgattagtttagtaaacatagcggaacaaaa |
52981900 |
T |
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| Q |
122 |
aattaaactataaaattggatttaaacctaggcatatttacccaacaagaagtcttcaaccgaaattgaatccagcagatgggtccagaagatcactcac |
221 |
Q |
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| T |
52981901 |
aattaaactataaaattggatttaaacctaggcatatttacccaacaagaagtcttcatccgaagttgaatccagcagatgggtccagaagatcactcac |
52982000 |
T |
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| Q |
222 |
tg |
223 |
Q |
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|| |
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| T |
52982001 |
tg |
52982002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 102
Target Start/End: Complemental strand, 55637577 - 55637501
Alignment:
| Q |
26 |
ccccaaactcgaccccagagcatcaatcctactccagctaaccaagatcttgcaattattaaaaatgattagtttag |
102 |
Q |
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||||||||| ||||||| || |||| |||||| |||||||||||||| |||||||||| |||| |||||||||| |
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| T |
55637577 |
ccccaaacttgaccccaaagagtcaaccctactgaagctaaccaagatcctgcaattattgaaaacaattagtttag |
55637501 |
T |
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