View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3471_low_7 (Length: 475)

Name: NF3471_low_7
Description: NF3471
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3471_low_7
NF3471_low_7
[»] chr8 (3 HSPs)
chr8 (96-441)||(25131449-25131799)
chr8 (311-382)||(39531150-39531221)
chr8 (350-384)||(36406640-36406674)
[»] chr1 (6 HSPs)
chr1 (79-344)||(10802246-10802516)
chr1 (79-285)||(13569820-13570028)
chr1 (323-384)||(44305354-44305415)
chr1 (325-384)||(37154104-37154163)
chr1 (332-380)||(6331620-6331668)
chr1 (94-167)||(11843991-11844068)
[»] scaffold0170 (1 HSPs)
scaffold0170 (79-285)||(7731-7934)
[»] scaffold0001 (1 HSPs)
scaffold0001 (81-135)||(141538-141592)
[»] chr3 (6 HSPs)
chr3 (311-392)||(31985751-31985832)
chr3 (338-382)||(43585081-43585125)
chr3 (350-384)||(44625646-44625680)
chr3 (311-381)||(53707111-53707181)
chr3 (355-384)||(7500883-7500912)
chr3 (90-141)||(53707339-53707393)
[»] chr7 (1 HSPs)
chr7 (350-384)||(35300579-35300613)
[»] chr6 (2 HSPs)
chr6 (350-384)||(10397931-10397965)
chr6 (350-384)||(23663898-23663932)
[»] chr5 (4 HSPs)
chr5 (350-384)||(30248907-30248941)
chr5 (350-384)||(34443908-34443942)
chr5 (350-384)||(34846297-34846331)
chr5 (350-382)||(2476348-2476380)
[»] chr4 (5 HSPs)
chr4 (323-381)||(1585655-1585713)
chr4 (350-384)||(10715597-10715631)
chr4 (350-384)||(10929367-10929401)
chr4 (355-384)||(2017581-2017610)
chr4 (350-382)||(4552130-4552162)
[»] chr2 (1 HSPs)
chr2 (350-384)||(13203710-13203744)


Alignment Details
Target: chr8 (Bit Score: 242; Significance: 1e-134; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 96 - 441
Target Start/End: Original strand, 25131449 - 25131799
Alignment:
Q  96 agaaggaatgacaatggagactaagagttgagagaggaagaggcgcaaattaagagagggagaagc--aaatgatatgaaattgaaacagagattgagtc 193  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| ||| ||  ||||||||||||| ||||||||||||||||||    
T  25131449 agaaggaatgaaaatggagactaagagttgagagaggaagaggcgcaaattgagagaggaagaggcgcaaatgatatgaaactgaaacagagattgagtc 25131548  T
Q  194 actgagagtgggagagtcacgataagttagagaaggagaagactgaaaaatagaacatttttacacgcctgaacatttgcctcaattttgcc----tcnn 289  Q
    |||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    |       
T  25131549 actgagagagggagagtcactataagttagagaaggagaagactgaaaaatag-acatttttacacgcctgaacatttgcctcaattttgcccggttttt 25131647  T
Q  290 nnnnnnnnaagtaaagaatatggctattgggctgggcttccaacatagaaagcagaagcagagcatgggcactagcccaggctagctggggggtgtaatc 389  Q
            ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  25131648 ttttttttaagtaaagaatatggctattgggttgggcttccaacattgaaagcagaagcagagcctgggcactagcccaggctagctggggggtgtaatc 25131747  T
Q  390 gcccatgttcatggctagtgcacgtgggccagcagagtgggtgggatgcagg 441  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25131748 gcccatgttcatggctagtgcacgtgggccagcagagtgggtgggatgcagg 25131799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 311 - 382
Target Start/End: Complemental strand, 39531221 - 39531150
Alignment:
Q  311 ggctattgggctgggcttccaacatagaaagcagaagcagagcatgggcactagcccaggctagctgggggg 382  Q
    |||||||||| |||||||  | || | |||| ||||| ||||| ||||||||||||||||||||||||||||    
T  39531221 ggctattgggttgggcttttagcaaacaaagtagaagtagagcctgggcactagcccaggctagctgggggg 39531150  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 350 - 384
Target Start/End: Original strand, 36406640 - 36406674
Alignment:
Q  350 gagcatgggcactagcccaggctagctggggggtg 384  Q
    |||| ||||||||||||||||||||||||||||||    
T  36406640 gagcctgggcactagcccaggctagctggggggtg 36406674  T

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Target: chr1 (Bit Score: 169; Significance: 2e-90; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 79 - 344
Target Start/End: Original strand, 10802246 - 10802516
Alignment:
Q  79 tggaggaagtgaagaggagaaggaatgacaatggagactaagagttgagagaggaagaggcgcaaattaagagagggagaagcaaatgatatgaaattga 178  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||     
T  10802246 tggaggaagtgaagaggagaaggaatgaaaatggagactaagagttgagagaggaagaggcgcaaattgagagagggagaagcaaatgatatgaaactg- 10802344  T
Q  179 aacagagattgagtcactgagagtgggagagtcacgataagttagagaaggagaagactgaaaaatagaacatttttacacgcctgaacatttgcctcaa 278  Q
    ||  |||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  10802345 aattgagattgagtcactaagagagggagagtcacgataagttagagaaggagaagactgaaaaatagaacatttttacacg-ctgaacatttgcctcaa 10802443  T
Q  279 ttttgcc-------tcnnnnnnnnnnaagtaaagaatatggctattgggctgggcttccaacatagaaagcag 344  Q
    |||||||       |           |||||||||||||||||||||||||||||||||||||||||||||||    
T  10802444 ttttgcccatttttttatttttttttaagtaaagaatatggctattgggctgggcttccaacatagaaagcag 10802516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 79 - 285
Target Start/End: Original strand, 13569820 - 13570028
Alignment:
Q  79 tggaggaagtgaagaggagaaggaatgacaatggagactaagagttgagagaggaagaggcgcaaattaagagagggagaagc--aaatgatatgaaatt 176  Q
    ||||| |||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| ||| ||  |||||||||||||||    
T  13569820 tggagaaagtgaagaggagagggaatgaaaatggagactaagagttgagagaggaagaggcgcaaattgagagaggaagaggcgcaaatgatatgaaatt 13569919  T
Q  177 gaaacagagattgagtcactgagagtgggagagtcacgataagttagagaaggagaagactgaaaaatagaacatttttacacgcctgaacatttgcctc 276  Q
    |||| ||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13569920 gaaatagagattgagtcactaagagagggagagtcacgataagttagagaaggagaagactgaaaaatagaacatttttacacgcctgaacatttgcctc 13570019  T
Q  277 aattttgcc 285  Q
    |||||||||    
T  13570020 aattttgcc 13570028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 323 - 384
Target Start/End: Complemental strand, 44305415 - 44305354
Alignment:
Q  323 gggcttccaacatagaaagcagaagcagagcatgggcactagcccaggctagctggggggtg 384  Q
    |||||||| ||| ||||||  | ||| |||| ||||||||||||||||||||||||||||||    
T  44305415 gggcttcctacaaagaaagttggagctgagcctgggcactagcccaggctagctggggggtg 44305354  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 325 - 384
Target Start/End: Original strand, 37154104 - 37154163
Alignment:
Q  325 gcttccaacatagaaagcagaagcagagcatgggcactagcccaggctagctggggggtg 384  Q
    |||||| ||| ||||||  | ||| |||| ||||||||||||||||||||||||||||||    
T  37154104 gcttcctacaaagaaagttggagctgagcctgggcactagcccaggctagctggggggtg 37154163  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 332 - 380
Target Start/End: Complemental strand, 6331668 - 6331620
Alignment:
Q  332 acatagaaagcagaagcagagcatgggcactagcccaggctagctgggg 380  Q
    ||||||||||  | ||| |||| ||||||||||||||||||||||||||    
T  6331668 acatagaaagttggagccgagcctgggcactagcccaggctagctgggg 6331620  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 94 - 167
Target Start/End: Original strand, 11843991 - 11844068
Alignment:
Q  94 ggagaaggaatgacaatggag----actaagagttgagagaggaagaggcgcaaattaagagagggagaagcaaatga 167  Q
    ||||||||||||| |||||||    ||| ||||||||||||||  ||||||||| || ||| ||||||| ||||||||    
T  11843991 ggagaaggaatgaaaatggaggcagactgagagttgagagagggtgaggcgcaagttgagatagggagaggcaaatga 11844068  T

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Target: scaffold0170 (Bit Score: 134; Significance: 1e-69; HSPs: 1)
Name: scaffold0170
Description:

Target: scaffold0170; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 79 - 285
Target Start/End: Complemental strand, 7934 - 7731
Alignment:
Q  79 tggaggaagtgaagaggagaaggaatgacaatggagactaagagttgagagaggaagaggcgcaaattaagagagggagaagcaaatgatatgaaattga 178  Q
    ||||||||||||||||||| |||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||     || |||    
T  7934 tggaggaagtgaagaggaggaggaatgaaaatggagactgagagttgagagaggaagaggcgcaaattaagagagggagaagcaaatga-----aactga 7840  T
Q  179 aacagagattgagtcactgagagtgggagagtcacgataagttagagaaggagaagactgaaaaatagaacattttta--cacgcctgaacatttgcctc 276  Q
    ||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| ||||||||||| |||| ||  | ||||||||||||||||||    
T  7839 aacagagattgagtcactgagagagggagagtcacgttaagttagagaaggagaagaccgaaaaatagaaaatttgtatgcgcgcctgaacatttgcctc 7740  T
Q  277 aattttgcc 285  Q
    |||| ||||    
T  7739 aattctgcc 7731  T

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Target: scaffold0001 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 81 - 135
Target Start/End: Complemental strand, 141592 - 141538
Alignment:
Q  81 gaggaagtgaagaggagaaggaatgacaatggagactaagagttgagagaggaag 135  Q
    |||||||||||||||||||||||||| ||||||||| ||||||||| ||||||||    
T  141592 gaggaagtgaagaggagaaggaatgaaaatggagacgaagagttgacagaggaag 141538  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 311 - 392
Target Start/End: Complemental strand, 31985832 - 31985751
Alignment:
Q  311 ggctattgggctgggcttccaacatagaaagcagaagcagagcatgggcactagcccaggctagctggggggtgtaatcgcc 392  Q
    |||||||||| |||||||  | || | |||| |||||||||||  |||||| |||||||||||||||||||||||| |||||    
T  31985832 ggctattgggttgggcttttaccaaacaaagtagaagcagagcccgggcaccagcccaggctagctggggggtgtagtcgcc 31985751  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 338 - 382
Target Start/End: Complemental strand, 43585125 - 43585081
Alignment:
Q  338 aaagcagaagcagagcatgggcactagcccaggctagctgggggg 382  Q
    ||||||||||| ||||  |||||||||||||||||||||||||||    
T  43585125 aaagcagaagctgagcccgggcactagcccaggctagctgggggg 43585081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 350 - 384
Target Start/End: Complemental strand, 44625680 - 44625646
Alignment:
Q  350 gagcatgggcactagcccaggctagctggggggtg 384  Q
    |||| ||||||||||||||||||||||||||||||    
T  44625680 gagcctgggcactagcccaggctagctggggggtg 44625646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 311 - 381
Target Start/End: Complemental strand, 53707181 - 53707111
Alignment:
Q  311 ggctattgggctgggcttccaacatagaaagcagaagcagagcatgggcactagcccaggctagctggggg 381  Q
    |||||||||| |||||||  | || | |||| |||||||||||  ||||| ||||||||||||||||||||    
T  53707181 ggctattgggttgggcttttaccaaacaaagtagaagcagagcccgggcattagcccaggctagctggggg 53707111  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 355 - 384
Target Start/End: Complemental strand, 7500912 - 7500883
Alignment:
Q  355 tgggcactagcccaggctagctggggggtg 384  Q
    ||||||||||||||||||||||||||||||    
T  7500912 tgggcactagcccaggctagctggggggtg 7500883  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 90 - 141
Target Start/End: Complemental strand, 53707393 - 53707339
Alignment:
Q  90 aagaggagaaggaatgacaatg---gagactaagagttgagagaggaagaggcgc 141  Q
    ||||||||||||||||| ||||   |||||| |||||||||||||| ||||||||    
T  53707393 aagaggagaaggaatgaaaatgaccgagactgagagttgagagagggagaggcgc 53707339  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 350 - 384
Target Start/End: Original strand, 35300579 - 35300613
Alignment:
Q  350 gagcatgggcactagcccaggctagctggggggtg 384  Q
    |||| ||||||||||||||||||||||||||||||    
T  35300579 gagcctgggcactagcccaggctagctggggggtg 35300613  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 350 - 384
Target Start/End: Original strand, 10397931 - 10397965
Alignment:
Q  350 gagcatgggcactagcccaggctagctggggggtg 384  Q
    |||| ||||||||||||||||||||||||||||||    
T  10397931 gagcctgggcactagcccaggctagctggggggtg 10397965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 350 - 384
Target Start/End: Original strand, 23663898 - 23663932
Alignment:
Q  350 gagcatgggcactagcccaggctagctggggggtg 384  Q
    |||| ||||||||||||||||||||||||||||||    
T  23663898 gagcctgggcactagcccaggctagctggggggtg 23663932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 350 - 384
Target Start/End: Complemental strand, 30248941 - 30248907
Alignment:
Q  350 gagcatgggcactagcccaggctagctggggggtg 384  Q
    |||| ||||||||||||||||||||||||||||||    
T  30248941 gagcctgggcactagcccaggctagctggggggtg 30248907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 350 - 384
Target Start/End: Complemental strand, 34443942 - 34443908
Alignment:
Q  350 gagcatgggcactagcccaggctagctggggggtg 384  Q
    |||| ||||||||||||||||||||||||||||||    
T  34443942 gagcctgggcactagcccaggctagctggggggtg 34443908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 350 - 384
Target Start/End: Complemental strand, 34846331 - 34846297
Alignment:
Q  350 gagcatgggcactagcccaggctagctggggggtg 384  Q
    |||| ||||||||||||||||||||||||||||||    
T  34846331 gagcctgggcactagcccaggctagctggggggtg 34846297  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 350 - 382
Target Start/End: Complemental strand, 2476380 - 2476348
Alignment:
Q  350 gagcatgggcactagcccaggctagctgggggg 382  Q
    |||| ||||||||||||||||||||||||||||    
T  2476380 gagcctgggcactagcccaggctagctgggggg 2476348  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 323 - 381
Target Start/End: Complemental strand, 1585713 - 1585655
Alignment:
Q  323 gggcttccaacatagaaagcagaagcagagcatgggcactagcccaggctagctggggg 381  Q
    |||||| | ||| ||||||  ||||| |||| |||||||||||||||||||||||||||    
T  1585713 gggcttgctacaaagaaagttgaagctgagcctgggcactagcccaggctagctggggg 1585655  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 350 - 384
Target Start/End: Complemental strand, 10715631 - 10715597
Alignment:
Q  350 gagcatgggcactagcccaggctagctggggggtg 384  Q
    |||| ||||||||||||||||||||||||||||||    
T  10715631 gagcctgggcactagcccaggctagctggggggtg 10715597  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 350 - 384
Target Start/End: Complemental strand, 10929401 - 10929367
Alignment:
Q  350 gagcatgggcactagcccaggctagctggggggtg 384  Q
    |||| ||||||||||||||||||||||||||||||    
T  10929401 gagcctgggcactagcccaggctagctggggggtg 10929367  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 355 - 384
Target Start/End: Original strand, 2017581 - 2017610
Alignment:
Q  355 tgggcactagcccaggctagctggggggtg 384  Q
    ||||||||||||||||||||||||||||||    
T  2017581 tgggcactagcccaggctagctggggggtg 2017610  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 350 - 382
Target Start/End: Complemental strand, 4552162 - 4552130
Alignment:
Q  350 gagcatgggcactagcccaggctagctgggggg 382  Q
    |||| ||||||||||||||||||||||||||||    
T  4552162 gagcctgggcactagcccaggctagctgggggg 4552130  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 350 - 384
Target Start/End: Complemental strand, 13203744 - 13203710
Alignment:
Q  350 gagcatgggcactagcccaggctagctggggggtg 384  Q
    |||| ||||||||||||||||||||||||||||||    
T  13203744 gagcctgggcactagcccaggctagctggggggtg 13203710  T

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