View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3471_low_75 (Length: 222)
Name: NF3471_low_75
Description: NF3471
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3471_low_75 |
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Alignment Details
Target: chr5 (Bit Score: 179; Significance: 9e-97; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 18 - 204
Target Start/End: Complemental strand, 40180924 - 40180738
Alignment:
| Q |
18 |
cttatccgctttgtagagttggtttggaagaataataagaatctcatcactacccctgttctggaatcccttgtattgtcaatatgccccactgctccca |
117 |
Q |
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| T |
40180924 |
cttatccactttgtagaattggtttggaagaataataagaatctcatcactacccctgttctggaatcccttgtattgtcaatatgccccactgctccca |
40180825 |
T |
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| Q |
118 |
ctgaatacgatgttgcactaaagaagaaggatatactttatctgtggaacttgctgaagcatattggccactatcagaccggtattc |
204 |
Q |
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| T |
40180824 |
ctgaatacgatgttgcactaaagaagaaggatatactttatctgtggaacttgctgaagcatattggccactatcagaccggtattc |
40180738 |
T |
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Target: chr8 (Bit Score: 47; Significance: 5e-18; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 34 - 104
Target Start/End: Original strand, 44459350 - 44459420
Alignment:
| Q |
34 |
agttggtttggaagaataataagaatctcatcactacccctgttctggaatcccttgtattgtcaatatgc |
104 |
Q |
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| T |
44459350 |
agttggtttggaagaataacaaggacctcatcactacccctgttctggaatcccttgtttcatcaatatgc |
44459420 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 34 - 104
Target Start/End: Original strand, 44466883 - 44466953
Alignment:
| Q |
34 |
agttggtttggaagaataataagaatctcatcactacccctgttctggaatcccttgtattgtcaatatgc |
104 |
Q |
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| T |
44466883 |
agttggtttggaagaataacaaggacctcatcactacccctgttctggaatcccttgtttcatcaatatgc |
44466953 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 58 - 91
Target Start/End: Original strand, 44460076 - 44460109
Alignment:
| Q |
58 |
atctcatcactacccctgttctggaatcccttgt |
91 |
Q |
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| T |
44460076 |
atctcatcactacccctgttctggaatcccttgt |
44460109 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 58 - 91
Target Start/End: Original strand, 44467609 - 44467642
Alignment:
| Q |
58 |
atctcatcactacccctgttctggaatcccttgt |
91 |
Q |
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| T |
44467609 |
atctcatcactacccctgttctggaatcccttgt |
44467642 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 135 - 196
Target Start/End: Original strand, 44460150 - 44460211
Alignment:
| Q |
135 |
ctaaagaagaaggatatactttatctgtggaacttgctgaagcatattggccactatcagac |
196 |
Q |
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| T |
44460150 |
ctaaggaagaacgacatattttttctgtgggaattgcttaagcatattggccactatcagac |
44460211 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 135 - 196
Target Start/End: Original strand, 44467683 - 44467744
Alignment:
| Q |
135 |
ctaaagaagaaggatatactttatctgtggaacttgctgaagcatattggccactatcagac |
196 |
Q |
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| T |
44467683 |
ctaaggaagaacgacatattttttctgtgggaattgcttaagcatattggccactatcagac |
44467744 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 34 - 91
Target Start/End: Original strand, 46358921 - 46358978
Alignment:
| Q |
34 |
agttggtttggaagaataataagaatctcatcactacccctgttctggaatcccttgt |
91 |
Q |
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| T |
46358921 |
agttggtttggaagaataacaaggacctcatcactacccctgttctggaatcccttgt |
46358978 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 135 - 196
Target Start/End: Original strand, 46359020 - 46359081
Alignment:
| Q |
135 |
ctaaagaagaaggatatactttatctgtggaacttgctgaagcatattggccactatcagac |
196 |
Q |
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| T |
46359020 |
ctaaggaagaacgacatattttttctgtgggaattgcttaagcatattggccactatcagac |
46359081 |
T |
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