View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3471_low_79 (Length: 216)
Name: NF3471_low_79
Description: NF3471
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3471_low_79 |
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Alignment Details
Target: chr1 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 14 - 199
Target Start/End: Complemental strand, 30026453 - 30026267
Alignment:
| Q |
14 |
atgagaatgagatatctgtcaattttgtgaaaaaggta-aagacgaaaccggtcgagtttgttaagattatatgccgttctatcttccctagcattgctt |
112 |
Q |
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| T |
30026453 |
atgagaatgagatatctgtcaattttgtgaaaaaggtagaagacgaagccggtcgagtttgttaagattatatgccgttctatcttccctagcattgctt |
30026354 |
T |
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| Q |
113 |
ctcttgactgctactcttgctaaccagtattccctgctgaaggtaaatttgtcaatatttcactgaagttttattaacattcaggag |
199 |
Q |
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| T |
30026353 |
ctcttgactgctactcttgctaaccagtattccctgctgaaggtaaatttgtcaatatttcactgaagttttattaacattcaggag |
30026267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 103; Significance: 2e-51; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 52 - 186
Target Start/End: Original strand, 34281692 - 34281826
Alignment:
| Q |
52 |
aagacgaaaccggtcgagtttgttaagattatatgccgttctatcttccctagcattgcttctcttgactgctactcttgctaaccagtattccctgctg |
151 |
Q |
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| T |
34281692 |
aagacgaagccggtcgagtttattgagattatatgccgttctatcttccctagcattgcttctcttcactgctactcttgctaaccggtattccctgctg |
34281791 |
T |
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| Q |
152 |
aaggtaaatttgtcaatatttcactgaagttttat |
186 |
Q |
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| T |
34281792 |
aaggtaaatatgtcaataattcactgaagatttat |
34281826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 96; Significance: 3e-47; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 28 - 186
Target Start/End: Complemental strand, 12723283 - 12723124
Alignment:
| Q |
28 |
tctgtcaattttgtgaaaaaggta-aagacgaaaccggtcgagtttgttaagattatatgccgttctatcttccctagcattgcttctcttgactgctac |
126 |
Q |
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||||||||||||||| ||||||| |||||||| |||||||||||| || ||||||||||| |||||||||||||||||||||||||| || | ||||| |
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| T |
12723283 |
tctgtcaattttgtgtgaaaggtagaagacgaagccggtcgagtttattgagattatatgctgttctatcttccctagcattgcttctattcgcggctac |
12723184 |
T |
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| Q |
127 |
tcttgctaaccagtattccctgctgaaggtaaatttgtcaatatttcactgaagttttat |
186 |
Q |
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||||||||||| |||||||||||||||||||||| |||||||| |||| ||||||||||| |
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| T |
12723183 |
tcttgctaaccggtattccctgctgaaggtaaatatgtcaataattcattgaagttttat |
12723124 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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