View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3471_low_8 (Length: 475)
Name: NF3471_low_8
Description: NF3471
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3471_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 407; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 14 - 460
Target Start/End: Complemental strand, 19185740 - 19185294
Alignment:
| Q |
14 |
aaatcttgttcctctacatcatgctgaataaaatgcaaggtgagtcttccatcttctctacgagcatgaagaaaatcttgtataggtatttgtttaagaa |
113 |
Q |
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| T |
19185740 |
aaattttgttcctctacatcatgctgaataaaatgcaaggtgagtcttccatcttctctatgagcatgaagaaaatcttgtattggtatttgtttaagaa |
19185641 |
T |
|
| Q |
114 |
taaaccttccattctccctataagatttgaacctaacacaaggctttccacttctccctatgcatgaaattggtggagggaactcattcaaccttattgt |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| |
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| T |
19185640 |
taaaccttccattctccctataagatttgaacctaacacaaggctttccacttctccctatgcatgaaattggtggagggtactcattcaacctttttgt |
19185541 |
T |
|
| Q |
214 |
tcttccactcttcaataaccactttccttctaaacccaaattcttttcgtcgcgaccttcgtcttcttcgtcttcgaattcttcaacttcatctgaagaa |
313 |
Q |
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||||||||||||| |||||||||||||||||||||||| |||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
19185540 |
tcttccactcttccataaccactttccttctaaacccagattcttttcgtcgcaaccttcatcttcttcgtcttcgaattcttcaacttcatctgaagaa |
19185441 |
T |
|
| Q |
314 |
ctttcaaaaccaagactctctttgcaaatattcaatctctttaaactcaaagatgacttcattttgttagataatggattctcactcccaaacccaagag |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19185440 |
ctttcaaaaccaagactctctttgcaaatattcaatctctttaaactcaaagataacttcattttgttagataatggattctcactcccaaacccaagag |
19185341 |
T |
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| Q |
414 |
atttattattgggaatatggtttgcatggtttattaattctggaaat |
460 |
Q |
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| T |
19185340 |
atttattattgggaatatggtttgcatggtttattaattctggaaat |
19185294 |
T |
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