View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3471_low_83 (Length: 205)

Name: NF3471_low_83
Description: NF3471
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3471_low_83
NF3471_low_83
[»] chr6 (15 HSPs)
chr6 (3-195)||(5065369-5065563)
chr6 (4-205)||(5253715-5253918)
chr6 (41-125)||(23127300-23127384)
chr6 (13-116)||(5177930-5178035)
chr6 (13-116)||(5279755-5279860)
chr6 (3-116)||(5346210-5346325)
chr6 (3-116)||(5126628-5126743)
chr6 (13-116)||(5688902-5689007)
chr6 (60-115)||(5398286-5398341)
chr6 (41-139)||(5098432-5098530)
chr6 (19-105)||(5100828-5100916)
chr6 (44-125)||(5124433-5124514)
chr6 (19-105)||(5135929-5136017)
chr6 (15-116)||(5242511-5242614)
chr6 (3-116)||(5427081-5427196)
[»] chr3 (4 HSPs)
chr3 (3-115)||(47985393-47985507)
chr3 (3-115)||(47994680-47994794)
chr3 (3-115)||(48003967-48004081)
chr3 (3-115)||(48013252-48013366)
[»] chr4 (2 HSPs)
chr4 (57-157)||(4132576-4132676)
chr4 (42-116)||(4122643-4122717)
[»] scaffold0294 (1 HSPs)
scaffold0294 (37-114)||(7878-7955)


Alignment Details
Target: chr6 (Bit Score: 128; Significance: 2e-66; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 3 - 195
Target Start/End: Complemental strand, 5065563 - 5065369
Alignment:
Q  3 tgaggaggagcagagagtagtgtcaagtattgaac--ggaaacaaagtggattttgttgttgtttttgagaatggtttcgttgtgaagaggacaacagtt 100  Q
    |||||||| |||||||||||| |||||||||||||  ||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  5065563 tgaggaggggcagagagtagtatcaagtattgaacctggaaataaagtggattttgttgttgtttttgagaacggtttcgttgtgaagaggacaacagtt 5065464  T
Q  101 tatcttatatatgatggactgattgctgaaaaagtggaggagtgtcatgcacaagataagagtggtattgttagtagtagtgatgaaaatgaatg 195  Q
    ||||| |||||||||| ||  ||||||||||| | |||||||||||||||||||||||||| || ||||||||||||  ||||||||||||||||    
T  5065463 tatctcatatatgatgaaccaattgctgaaaagggggaggagtgtcatgcacaagataagaatgttattgttagtagcggtgatgaaaatgaatg 5065369  T

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Target: chr6; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 4 - 205
Target Start/End: Original strand, 5253715 - 5253918
Alignment:
Q  4 gaggaggagcagagagtagtgtcaagtattgaac--ggaaacaaagtggattttgttgttgtttttgagaatggtttcgttgtgaagaggacaacagttt 101  Q
    ||||||| ||| |||||| | | |||||||||||  ||||| |||||||| ||||||||||||||||||||  ||||| ||||||||||||| |||||||    
T  5253715 gaggaggggcaaagagtattattaagtattgaacctggaaataaagtggagtttgttgttgtttttgagaacagtttcattgtgaagaggacgacagttt 5253814  T
Q  102 atcttatatatgatggactgattgctgaaaaagtggaggagtgtcatgcacaagataagagtggtattgttagtagtagtgatgaaaatgaatgttttgt 201  Q
    |||| |||||||| |  |  ||||||||||| | |||||||||||||| |||||||| || || ||||||||||||| || |||||||||||||||||||    
T  5253815 atctcatatatgacgagcccattgctgaaaaggcggaggagtgtcatggacaagatatgaatgttattgttagtagtggttatgaaaatgaatgttttgt 5253914  T
Q  202 taga 205  Q
    ||||    
T  5253915 taga 5253918  T

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Target: chr6; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 41 - 125
Target Start/End: Complemental strand, 23127384 - 23127300
Alignment:
Q  41 aacaaagtggattttgttgttgtttttgagaatggtttcgttgtgaagaggacaacagtttatcttatatatgatggactgattg 125  Q
    |||||| ||||  ||||||| ||||||||||||||||||||||||||||  ||||||||||||||| ||||||||| ||| ||||    
T  23127384 aacaaaatggaggttgttgtcgtttttgagaatggtttcgttgtgaagaatacaacagtttatcttgtatatgatgaactaattg 23127300  T

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Target: chr6; HSP #4
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 13 - 116
Target Start/End: Original strand, 5177930 - 5178035
Alignment:
Q  13 cagagagtagtgtcaagtattgaacg--gaaacaaagtggattttgttgttgtttttgagaatggtttcgttgtgaagaggacaacagtttatcttatat 110  Q
    ||||||||||| |||||||| ||||   | |||||||||||  ||||||||||||||||||| |||||| |||||||||  ||||||||||||||  |||    
T  5177930 cagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgttgttgtttttgagaacggtttcattgtgaagaaaacaacagtttatctcgtat 5178029  T
Q  111 atgatg 116  Q
    ||||||    
T  5178030 atgatg 5178035  T

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Target: chr6; HSP #5
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 13 - 116
Target Start/End: Original strand, 5279755 - 5279860
Alignment:
Q  13 cagagagtagtgtcaagtattgaacg--gaaacaaagtggattttgttgttgtttttgagaatggtttcgttgtgaagaggacaacagtttatcttatat 110  Q
    ||||||||||| |||||||| ||||   | |||||||||||  ||||||||||||||||||| |||||| |||||||||  ||||||||||||||  |||    
T  5279755 cagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgttgttgtttttgagaacggtttcattgtgaagaaaacaacagtttatctcgtat 5279854  T
Q  111 atgatg 116  Q
    ||||||    
T  5279855 atgatg 5279860  T

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Target: chr6; HSP #6
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 3 - 116
Target Start/End: Original strand, 5346210 - 5346325
Alignment:
Q  3 tgaggaggagcagagagtagtgtcaagtattgaac--ggaaacaaagtggattttgttgttgtttttgagaatggtttcgttgtgaagaggacaacagtt 100  Q
    ||||||||  |||||||| || |||||||| ||||  || |||||||||||  |||| |||||| |||||||||||||| ||||||||| |||| || ||    
T  5346210 tgaggagggccagagagttgtatcaagtatagaacctggtaacaaagtggaggttgtcgttgttattgagaatggtttcattgtgaagaagacagcaatt 5346309  T
Q  101 tatcttatatatgatg 116  Q
    ||||| ||||||||||    
T  5346310 tatctcatatatgatg 5346325  T

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Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 3 - 116
Target Start/End: Complemental strand, 5126743 - 5126628
Alignment:
Q  3 tgaggaggagcagagagtagtgtcaagtattgaac--ggaaacaaagtggattttgttgttgtttttgagaatggtttcgttgtgaagaggacaacagtt 100  Q
    |||||||| | |||||||||| |||||||| |||   || |||||||| ||  |||||||||||||| |||| |||||| ||||||||| |||| | |||    
T  5126743 tgaggagggggagagagtagtatcaagtatagaagctggtaacaaagttgagattgttgttgtttttaagaacggtttcattgtgaagaagacagctgtt 5126644  T
Q  101 tatcttatatatgatg 116  Q
    ||||| ||||||||||    
T  5126643 tatctcatatatgatg 5126628  T

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Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 13 - 116
Target Start/End: Complemental strand, 5689007 - 5688902
Alignment:
Q  13 cagagagtagtgtcaagtattgaacg--gaaacaaagtggattttgttgttgtttttgagaatggtttcgttgtgaagaggacaacagtttatcttatat 110  Q
    ||||||||||| |||||||| ||||   | |||||||||||  |||||  |||||||||||| |||||| |||||||||  ||||||||||||||  |||    
T  5689007 cagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgagaacggtttcattgtgaagaaaacaacagtttatctcgtat 5688908  T
Q  111 atgatg 116  Q
    ||||||    
T  5688907 atgatg 5688902  T

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Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 60 - 115
Target Start/End: Original strand, 5398286 - 5398341
Alignment:
Q  60 ttgtttttgagaatggtttcgttgtgaagaggacaacagtttatcttatatatgat 115  Q
    ||||||| ||||||| |||| ||||||||| |||||||||||||||| ||||||||    
T  5398286 ttgttttcgagaatgatttcattgtgaagaagacaacagtttatcttgtatatgat 5398341  T

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Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 139
Target Start/End: Original strand, 5098432 - 5098530
Alignment:
Q  41 aacaaagtggattttgttgttgtttttgagaatggtttcgttgtgaagaggacaacagtttatcttatatatgatggactgattgctgaaaaagtggag 139  Q
    |||||||||||  |  |||||||||| |||||  ||||| ||||||| | |||| ||||||||||  ||||||||| ||  |||| |||||||||||||    
T  5098432 aacaaagtggaggtcattgttgttttcgagaacagtttcattgtgaaaaagacagcagtttatctggtatatgatgaacaaattggtgaaaaagtggag 5098530  T

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Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 19 - 105
Target Start/End: Complemental strand, 5100916 - 5100828
Alignment:
Q  19 gtagtgtcaagtattgaac--ggaaacaaagtggattttgttgttgtttttgagaatggtttcgttgtgaagaggacaacagtttatct 105  Q
    ||||| |||||||| ||||  || |||||||||||  | |||||||||||||||||  ||||| ||||||| | |||| ||||||||||    
T  5100916 gtagtatcaagtatagaacccggtaacaaagtggaggtcgttgttgtttttgagaacagtttcattgtgaaaaagacagcagtttatct 5100828  T

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Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 44 - 125
Target Start/End: Complemental strand, 5124514 - 5124433
Alignment:
Q  44 aaagtggattttgttgttgtttttgagaatggtttcgttgtgaagaggacaacagtttatcttatatatgatggactgattg 125  Q
    |||||||| |||||| |||||||| ||||  | ||| ||||||||  ||||||| | ||| |||||||||||| ||||||||    
T  5124514 aaagtggaatttgtttttgtttttaagaaccgcttcattgtgaaggagacaacaatgtatattatatatgatgaactgattg 5124433  T

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Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 19 - 105
Target Start/End: Complemental strand, 5136017 - 5135929
Alignment:
Q  19 gtagtgtcaagtattgaac--ggaaacaaagtggattttgttgttgtttttgagaatggtttcgttgtgaagaggacaacagtttatct 105  Q
    ||||| |||||||| ||||  || |||||||||||  | |||||||||||||||||  ||||| ||||||| | |||| ||||||||||    
T  5136017 gtagtatcaagtatagaacccggtaacaaagtggaggtcgttgttgtttttgagaacagtttcattgtgaaaaagacagcagtttatct 5135929  T

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Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 116
Target Start/End: Complemental strand, 5242614 - 5242511
Alignment:
Q  15 gagagtagtgtcaagtattgaac--ggaaacaaagtggattttgttgttgtttttgagaatggtttcgttgtgaagaggacaacagtttatcttatatat 112  Q
    ||||||||| | |||||| ||||  || |||||||||||  | ||| |||||||||||||  ||||| ||||||||| ||||  |||||||||  |||||    
T  5242614 gagagtagtatgaagtatagaacctggtaacaaagtggaggtcgtttttgtttttgagaacagtttcattgtgaagaagacagtagtttatctcgtatat 5242515  T
Q  113 gatg 116  Q
    ||||    
T  5242514 gatg 5242511  T

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Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 116
Target Start/End: Original strand, 5427081 - 5427196
Alignment:
Q  3 tgaggaggagcagagagtagtgtcaagtattgaac--ggaaacaaagtggattttgttgttgtttttgagaatggtttcgttgtgaagaggacaacagtt 100  Q
    |||||||| | | |||||||| |||||||| ||||  || |||||| ||||  | ||| |||||||||||||  |||||||||||| || ||||  ||||    
T  5427081 tgaggagggggaaagagtagtatcaagtatagaacctggtaacaaaatggaggtcgtttttgtttttgagaacagtttcgttgtgacgaagacagtagtt 5427180  T
Q  101 tatcttatatatgatg 116  Q
    |||||  |||||||||    
T  5427181 tatctcgtatatgatg 5427196  T

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Target: chr3 (Bit Score: 56; Significance: 2e-23; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 3 - 115
Target Start/End: Complemental strand, 47985507 - 47985393
Alignment:
Q  3 tgaggaggagcagagagtagtgtcaagtattgaac--ggaaacaaagtggattttgttgttgtttttgagaatggtttcgttgtgaagaggacaacagtt 100  Q
    |||||||| | |||||||||| |||||||| ||||  || |||||||||||  | |||||||||||||||||||||||| |||||||||||| | |||||    
T  47985507 tgaggagggggagagagtagtatcaagtatagaacccggtaacaaagtggaggtggttgttgtttttgagaatggtttcattgtgaagaggatagcagtt 47985408  T
Q  101 tatcttatatatgat 115  Q
    |||||| ||||||||    
T  47985407 tatcttgtatatgat 47985393  T

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Target: chr3; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 3 - 115
Target Start/End: Complemental strand, 47994794 - 47994680
Alignment:
Q  3 tgaggaggagcagagagtagtgtcaagtattgaa--cggaaacaaagtggattttgttgttgtttttgagaatggtttcgttgtgaagaggacaacagtt 100  Q
    |||||||| | |||||||||| |||||||| |||  ||| |||||||||||  | |||||||||||||||||||||||| |||||||||||| | |||||    
T  47994794 tgaggagggggagagagtagtatcaagtatagaatccggtaacaaagtggaggtggttgttgtttttgagaatggtttcattgtgaagaggatagcagtt 47994695  T
Q  101 tatcttatatatgat 115  Q
    |||||| ||||||||    
T  47994694 tatcttgtatatgat 47994680  T

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Target: chr3; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 3 - 115
Target Start/End: Complemental strand, 48004081 - 48003967
Alignment:
Q  3 tgaggaggagcagagagtagtgtcaagtattgaac--ggaaacaaagtggattttgttgttgtttttgagaatggtttcgttgtgaagaggacaacagtt 100  Q
    |||||||| | |||||||||| |||||||| ||||  || |||||||||||  | |||||||||||||||||||||||| |||||||||||| | |||||    
T  48004081 tgaggagggggagagagtagtatcaagtatagaacccggtaacaaagtggaggtggttgttgtttttgagaatggtttcattgtgaagaggatagcagtt 48003982  T
Q  101 tatcttatatatgat 115  Q
    |||||| ||||||||    
T  48003981 tatcttgtatatgat 48003967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 3 - 115
Target Start/End: Complemental strand, 48013366 - 48013252
Alignment:
Q  3 tgaggaggagcagagagtagtgtcaagtattgaa--cggaaacaaagtggattttgttgttgtttttgagaatggtttcgttgtgaagaggacaacagtt 100  Q
    |||||||| | |||||||||| |||||||| |||  ||| |||||||||||  | |||||||||||||||||||||||| |||||||||||| | |||||    
T  48013366 tgaggagggggagagagtagtatcaagtatagaatccggtaacaaagtggaggtggttgttgtttttgagaatggtttcattgtgaagaggatagcagtt 48013267  T
Q  101 tatcttatatatgat 115  Q
    |||||| ||||||||    
T  48013266 tatcttgtatatgat 48013252  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 57 - 157
Target Start/End: Complemental strand, 4132676 - 4132576
Alignment:
Q  57 ttgttgtttttgagaatggtttcgttgtgaagaggacaacagtttatcttatatatgatggactgattgctgaaaaagtggaggagtgtcatgcacaaga 156  Q
    |||||||||||| |||  ||||| |||||| || |||| |||||||||| |||||||||| ||  |||| ||||||  ||| | | ||||||||||||||    
T  4132676 ttgttgtttttgggaacagtttcattgtgatgaagacagcagtttatctcatatatgatgaaccaattggtgaaaatttggggcaatgtcatgcacaaga 4132577  T
Q  157 t 157  Q
    |    
T  4132576 t 4132576  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 116
Target Start/End: Complemental strand, 4122717 - 4122643
Alignment:
Q  42 acaaagtggattttgttgttgtttttgagaatggtttcgttgtgaagaggacaacagtttatcttatatatgatg 116  Q
    ||||||||||  |||||||||||||||  ||  ||||| |||||| || |||| |||||||||| ||||||||||    
T  4122717 acaaagtggagattgttgttgtttttggaaacagtttcattgtgatgaagacatcagtttatctcatatatgatg 4122643  T

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Target: scaffold0294 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 37 - 114
Target Start/End: Complemental strand, 7955 - 7878
Alignment:
Q  37 cggaaacaaagtggattttgttgttgtttttgagaatggtttcgttgtgaagaggacaacagtttatcttatatatga 114  Q
    |||||||||||||||  ||||||||||||||| | | |||||| ||| |||    |||||| ||||||||||||||||    
T  7955 cggaaacaaagtggaggttgttgttgtttttggggacggtttcattgcgaaagaaacaacaatttatcttatatatga 7878  T

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