View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3472_high_15 (Length: 377)
Name: NF3472_high_15
Description: NF3472
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3472_high_15 |
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Alignment Details
Target: chr1 (Bit Score: 285; Significance: 1e-160; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 17 - 373
Target Start/End: Complemental strand, 44286786 - 44286417
Alignment:
| Q |
17 |
aaaatttgttggtagaaaagggaagtgaggaaagcaccgctaccactccagttggaacgcaacgcaagaggagtttagtttctaccagaaatcaaattcc |
116 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
44286786 |
aaaatttgttggtgaaaaagggaagtgaggaaagcaccgctaccactacagttggaacgcaacgcaagaagagtttagtttctaccagaaatcaaattcc |
44286687 |
T |
|
| Q |
117 |
cctttgaaatttcttcgatcataattga----------cccccaaccattttctctcttctgcaacgttcccttcgtttccattttcccattcctcttat |
206 |
Q |
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|||||||||||||||||||||||||| | ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44286686 |
cctttgaaatttcttcgatcataattcattatttcacacccccaacccttttctctcttctgcaacgttcccttcgtttccattttcccattcctcttat |
44286587 |
T |
|
| Q |
207 |
tgccaacttttgttctcaggttattcatatggtaattttcttttccctctttcttacaatttttgtttccttcatgttcgactctaagtaataacaagta |
306 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
44286586 |
tgccaacttttcttctcaggttattcatatggtaattttcttttccctctttcttacaatttttgtttccttcatgtttgactctaagtaataacaagta |
44286487 |
T |
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| Q |
307 |
cattattattgttattat---tattttgaaggatcctcatgctgctgaagatttgcctcaatacattcat |
373 |
Q |
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|||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44286486 |
cattattattattattattattattttgaaggatcctcatgctgctgaagatttgcctcaatacattcat |
44286417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 373
Target Start/End: Original strand, 44069217 - 44069596
Alignment:
| Q |
1 |
ttacaccagttacagtaaaattt-gttggtagaaaagggaagtgaggaaagcaccgctaccactccagttggaacgcaacgcaagaggagtttagtttct |
99 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||| || ||||||||||||| |
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| T |
44069217 |
ttacaccagttacagtaaaatttagttggtagaaaagggaagtgaggaaagcaccgctacaga--cagttggaacgcaa-----gaagagtttagtttct |
44069309 |
T |
|
| Q |
100 |
accagaaatcaaattcccctttgaaatttcttcgatcata---------attg---------acccccaaccattttctctcttctgcaacgttcccttc |
181 |
Q |
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| |||||||||||||||| || |||||||||| ||||| ||| |||||||||| ||||||| ||||||||| |||| |
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| T |
44069310 |
agcagaaatcaaattccctattcaaatttcttccatcatttcattatccatttcactttcacacccccaacccttttctcgcttctgcaag-----cttc |
44069404 |
T |
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| Q |
182 |
gtttccattttcccattcctcttattgccaacttttgttctcaggttattcatatggtaattttcttttccctctttcttacaatttttgtttccttcat |
281 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44069405 |
gtttccattttctcattcctcttattgccaacttttgttctcaggttattcatatggtaattttcttttccctctttcttacaatttttgtttccttcat |
44069504 |
T |
|
| Q |
282 |
gttcgactctaagtaataacaagtacattattattgttattattattttgaaggatcctcatgctgctgaagatttgcctcaatacattcat |
373 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44069505 |
gttcgactctaagtaataacaagtacattattattgttattattattttgaaggatcctcatgctgctgaagatttgcctcaatacattcat |
44069596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 294 - 373
Target Start/End: Complemental strand, 44084285 - 44084203
Alignment:
| Q |
294 |
gtaataacaagtacattattattgttattattatt---ttgaaggatcctcatgctgctgaagatttgcctcaatacattcat |
373 |
Q |
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||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44084285 |
gtaataacaagtacattattattattattattattattttgaaggatcctcatgctgctgaagatttgcctcaatacattcat |
44084203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 294 - 373
Target Start/End: Original strand, 16443135 - 16443217
Alignment:
| Q |
294 |
gtaataacaagtacattattattgttat---tattattttgaaggatcctcatgctgctgaagatttgcctcaatacattcat |
373 |
Q |
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||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16443135 |
gtaataacaagtacattattattattattattattattttgaaggatcctcatgctgctgaagatttgcctcaatacattcat |
16443217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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