View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3472_high_16 (Length: 363)
Name: NF3472_high_16
Description: NF3472
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3472_high_16 |
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Alignment Details
Target: chr1 (Bit Score: 196; Significance: 1e-106; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 18 - 353
Target Start/End: Original strand, 43162031 - 43162365
Alignment:
| Q |
18 |
catactagattcttcttttctgtcacatgttggcatattgcatgtttctccaaaaatccaagcaccacttccatctttatcactcttttnnnnnnnnnng |
117 |
Q |
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| T |
43162031 |
catactagattcttcttttctgtcacatgttggcatattgcatgtttctccaaaaatccaagcaccacttccatctttatcactcttttcaaaaataa-g |
43162129 |
T |
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| Q |
118 |
gacaatgtaggataagtaataataataagcacataacaggacaatacaaaaggatacttaaattatagtttagcttgtgaccactgcatggcagctttat |
217 |
Q |
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| T |
43162130 |
gacaatgtaggataagtaat---aataagcacataacaggacaatacaaaaggatacttaaattatagtttagcttgtgaccactgcatggcagctttat |
43162226 |
T |
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| Q |
218 |
aaataacgttaacatgcagtaattaaaatcaca---nnnnnnnnnctcattattactattaacatgattaatcattatcannnnnnnnnnnnnnncttcc |
314 |
Q |
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||||||||||||||||||||||||||||||||| | ||||||| ||||||||||||||||||||||||| ||||| |
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| T |
43162227 |
aaataacgttaacatgcagtaattaaaatcacattttttttttctcccattatttctattaacatgattaatcattatcattttttgtattttttcttcc |
43162326 |
T |
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| Q |
315 |
ataattatatatcttgatagtgatttcatgacttctgtg |
353 |
Q |
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| T |
43162327 |
ataattatatatcttgatagtgatttcatgacttctgtg |
43162365 |
T |
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