View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3472_high_19 (Length: 343)

Name: NF3472_high_19
Description: NF3472
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3472_high_19
NF3472_high_19
[»] chr8 (14 HSPs)
chr8 (18-326)||(36202467-36202775)
chr8 (18-326)||(36207939-36208247)
chr8 (18-326)||(36184755-36185063)
chr8 (18-331)||(36196911-36197221)
chr8 (18-331)||(36213368-36213687)
chr8 (18-324)||(36201082-36201388)
chr8 (18-258)||(36199060-36199300)
chr8 (18-331)||(36210026-36210339)
chr8 (237-331)||(36214831-36214925)
chr8 (18-156)||(36188593-36188731)
chr8 (222-326)||(36188749-36188853)
chr8 (220-331)||(36183540-36183651)
chr8 (108-154)||(36183441-36183487)
chr8 (278-331)||(36199303-36199356)


Alignment Details
Target: chr8 (Bit Score: 277; Significance: 1e-155; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 18 - 326
Target Start/End: Original strand, 36202467 - 36202775
Alignment:
Q  18 cttgcaacccttatgatcttcgccaaaggggataccaatttcacttaaatcaagtctaccatggagatcatacattacaactaggattgtttgcagctcc 117  Q
    ||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  36202467 cttgcaacccttatgatcttcaccaaagggcataccaatttcacttaaatcaagtctaccatggagatcatacattacaactaggactgtttgcagctcc 36202566  T
Q  118 ttcatcttagcacacagtagaagagctctttctgcagttctttttcttttgttattaccataaaacaggcaacaggatgattcagctagagcaatcttat 217  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| ||| |||||||||||||||||||||| |||||||||    
T  36202567 ttcatcttagcacacagtagaagagctctttctgcagttcttattcttttgttattaccgtaagacatgcaacaggatgattcagctagatcaatcttat 36202666  T
Q  218 catcaaaattcagacatattgcatcaccaatttgtgtttgaatctgtgtaatgtctggcttcttcgtcacggttgctgtgacaatcttttcgaacaattg 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36202667 catcaaaattcagacatattgcatcaccaatttgtgtttgaatctgtgtaatgtctggcttcttcgtcacggttgctgtgacaatcttttcgaacaattg 36202766  T
Q  318 atctctctc 326  Q
    |||||||||    
T  36202767 atctctctc 36202775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 18 - 326
Target Start/End: Original strand, 36207939 - 36208247
Alignment:
Q  18 cttgcaacccttatgatcttcgccaaaggggataccaatttcacttaaatcaagtctaccatggagatcatacattacaactaggattgtttgcagctcc 117  Q
    ||||||||| ||||||||||| ||||||||||||||||| |||| |||||||||||||||||| |||||||||| ||||||||| | ||||||||| | |    
T  36207939 cttgcaaccattatgatcttcaccaaaggggataccaatctcacctaaatcaagtctaccatgaagatcatacagtacaactagtactgtttgcagtttc 36208038  T
Q  118 ttcatcttagcacacagtagaagagctctttctgcagttctttttcttttgttattaccataaaacaggcaacaggatgattcagctagagcaatcttat 217  Q
    || |||||||||||||| ||||||||||||||||||||| |  |||||||||||||||||||| ||| |||||| |||| ||||| |||| | |||||||    
T  36208039 tttatcttagcacacagaagaagagctctttctgcagttgtcattcttttgttattaccataacacacgcaacaagatgtttcagatagatcgatcttat 36208138  T
Q  218 catcaaaattcagacatattgcatcaccaatttgtgtttgaatctgtgtaatgtctggcttcttcgtcacggttgctgtgacaatcttttcgaacaattg 317  Q
    ||||||||||||||| |||||||  |||||| |||||||||||||   |||||||||| ||||| ||||| ||||||||||||||||||| |||||||||    
T  36208139 catcaaaattcagacctattgcaataccaatctgtgtttgaatcttgctaatgtctggtttcttggtcacagttgctgtgacaatcttttggaacaattg 36208238  T
Q  318 atctctctc 326  Q
    |||||||||    
T  36208239 atctctctc 36208247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 18 - 326
Target Start/End: Original strand, 36184755 - 36185063
Alignment:
Q  18 cttgcaacccttatgatcttcgccaaaggggataccaatttcacttaaatcaagtctaccatggagatcatacattacaactaggattgtttgcagctcc 117  Q
    ||||||||| ||||||||||| ||||||||||||||||| |||| |||||||||||||||||| |||||| ||| ||||||||| | ||||||||| |||    
T  36184755 cttgcaaccattatgatcttcaccaaaggggataccaatctcacctaaatcaagtctaccatgaagatcacacaatacaactagtactgtttgcagttcc 36184854  T
Q  118 ttcatcttagcacacagtagaagagctctttctgcagttctttttcttttgttattaccataaaacaggcaacaggatgattcagctagagcaatcttat 217  Q
    || |||||||| ||||| ||||||||||||||||||||| |  |||||||||||||||||||| ||| |||||| |||| ||||| |||| | |||||||    
T  36184855 tttatcttagcgcacagaagaagagctctttctgcagttgtcattcttttgttattaccataacacacgcaacaagatgtttcagatagatcgatcttat 36184954  T
Q  218 catcaaaattcagacatattgcatcaccaatttgtgtttgaatctgtgtaatgtctggcttcttcgtcacggttgctgtgacaatcttttcgaacaattg 317  Q
    ||||||||||||||| |||||||  |||||| |||||||||||||   |||||||||| ||||| ||||| ||||||||||||||||||| |||||||||    
T  36184955 catcaaaattcagacctattgcaataccaatctgtgtttgaatcttgctaatgtctggtttcttggtcacagttgctgtgacaatcttttggaacaattg 36185054  T
Q  318 atctctctc 326  Q
    |||||||||    
T  36185055 atctctctc 36185063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 18 - 331
Target Start/End: Original strand, 36196911 - 36197221
Alignment:
Q  18 cttgcaacccttatgatcttcgccaaagggg---ataccaatttcacttaaatcaagtctaccatggagatcatacattacaactaggattgtttgcagc 114  Q
    ||||||||| ||||||||||| |||||||||   |||||||| |||| |||||| ||||| ||| | |||||||||| ||||||||||| ||||||||||    
T  36196911 cttgcaaccattatgatcttcaccaaagggggggataccaatctcacctaaatcgagtctcccacgaagatcatacagtacaactaggactgtttgcagc 36197010  T
Q  115 tccttcatcttagcacacagtagaagagctctttctgcagttctttttcttttgttattaccataaaacaggcaacaggatgattcagctagagcaatct 214  Q
    || ||||||||||||||||  ||| |||||||||||||||||    |||||||  |||||||| |||||| |||||| | |||||||||| || |  |||    
T  36197011 tctttcatcttagcacacaaaagatgagctctttctgcagttgccattctttttctattaccaaaaaacatgcaacaagttgattcagctggatccgtct 36197110  T
Q  215 tatcatcaaaattcagacatattgcatcaccaatttgtgtttgaatctgtgtaatgtctggcttcttcgtcacggttgctgtgacaatcttttcgaacaa 314  Q
    ||||||||||||       |||||||||||||||| |||||||||||| |||||||||||||||||| ||||| ||||||||||||||||||| ||| ||    
T  36197111 tatcatcaaaat------ctattgcatcaccaattagtgtttgaatctttgtaatgtctggcttctttgtcacagttgctgtgacaatcttttggaataa 36197204  T
Q  315 ttgatctctctctgctc 331  Q
    |||||||||||| ||||    
T  36197205 ttgatctctctcagctc 36197221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 18 - 331
Target Start/End: Original strand, 36213368 - 36213687
Alignment:
Q  18 cttgcaacccttatgatcttcgccaaaggggataccaatttcacttaaatcaagtctaccatggagatcatacattacaactaggattgtttgcagctcc 117  Q
    ||||||||| ||||||||||| |||||||||| |||||| |||| |||||| ||||| ||||| ||||||||||||||||  |||| ||||||||||||     
T  36213368 cttgcaaccattatgatcttcaccaaaggggacaccaatctcacctaaatcgagtctcccatgaagatcatacattacaatcaggactgtttgcagctct 36213467  T
Q  118 ttcatcttagcacacagtagaagagctctttctgcagttctttttcttttgttattaccataaaacaggcaacaggatgattcagctagagcaatcttat 217  Q
    |||||||||||||| |  ||| ||||||||||||||||| |   | ||||  |||||||| || ||| |||||| | |||||| |||| |   |||||||    
T  36213468 ttcatcttagcacaaataagatgagctctttctgcagttgtcactgttttactattaccaaaacacatgcaacaagttgattcggctacattcatcttat 36213567  T
Q  218 catcaaaattcagacatattgcatcaccaatttgtgtttgaatctgtgtaatgtctggcttcttcgtcacggttg------ctgtgacaatcttttcgaa 311  Q
    ||| |||||| |||| ||||||||||||||||||||||||||||  |||||||||||||||||| ||||| ||||      ||||||||||||||| |||    
T  36213568 cattaaaattgagacctattgcatcaccaatttgtgtttgaatcattgtaatgtctggcttctttgtcacagttgctgtgactgtgacaatcttttggaa 36213667  T
Q  312 caattgatctctctctgctc 331  Q
    ||||||||||||||| ||||    
T  36213668 caattgatctctctcagctc 36213687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 18 - 324
Target Start/End: Original strand, 36201082 - 36201388
Alignment:
Q  18 cttgcaacccttatgatcttcgccaaaggggataccaatttcacttaaatcaagtctaccatggagatcatacattacaactaggattgtttgcagctcc 117  Q
    ||||||||| ||||||||||| |||||||||| |||||| || | |||||||| ||||||||| |||||||||| ||||||||||| |||||||||||||    
T  36201082 cttgcaaccattatgatcttcaccaaaggggacaccaatctcccctaaatcaaatctaccatgaagatcatacagtacaactaggactgtttgcagctcc 36201181  T
Q  118 ttcatcttagcacacagtagaagagctctttctgcagttctttttcttttgttattaccataaaacaggcaacaggatgattcagctagagcaatcttat 217  Q
    |||||||||||||| |  ||| ||||||| ||||||||| |  |||||||  |||||||| || ||| |||||| | |||||  |||    |  || |||    
T  36201182 ttcatcttagcacaaataagatgagctctatctgcagttgtcattcttttactattaccaaaacacatgcaacaagttgattttgctgcctccgtcatat 36201281  T
Q  218 catcaaaattcagacatattgcatcaccaatttgtgtttgaatctgtgtaatgtctggcttcttcgtcacggttgctgtgacaatcttttcgaacaattg 317  Q
    ||| |||||| |||| ||||||||||||||| |||||||||||||   |||||||||||||||| ||||| |||||||||||| |||||| |||||||||    
T  36201282 cattaaaattgagacctattgcatcaccaatctgtgtttgaatcttattaatgtctggcttcttggtcacagttgctgtgacagtcttttggaacaattg 36201381  T
Q  318 atctctc 324  Q
    |||||||    
T  36201382 atctctc 36201388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 18 - 258
Target Start/End: Original strand, 36199060 - 36199300
Alignment:
Q  18 cttgcaacccttatgatcttcgccaaaggggataccaatttcacttaaatcaagtctaccatggagatcatacattacaactaggattgtttgcagctcc 117  Q
    ||||||||| ||||||||||| ||||||||||||||||| | ||||||||||||||||||||  |||||||||| ||||||||||| ||||||||||||     
T  36199060 cttgcaaccattatgatcttcaccaaaggggataccaatcttacttaaatcaagtctaccataaagatcatacactacaactaggactgtttgcagctct 36199159  T
Q  118 ttcatcttagcacacagtagaagagctctttctgcagttctttttcttttgttattaccataaaacaggcaacaggatgattcagctagagcaatcttat 217  Q
    ||||||||||||||||| |||||||||||||||| |||| |   |||||| |||||| || || ||| |||||| |  |||||||||| | |  || |||    
T  36199160 ttcatcttagcacacagaagaagagctctttctgtagttgtcaatcttttattattaacaaaacacatgcaacaagtagattcagctatatctgtcgtat 36199259  T
Q  218 catcaaaattcagacatattgcatcaccaatttgtgtttga 258  Q
    ||||||||||||||| ||||||||| || ||| ||||||||    
T  36199260 catcaaaattcagacctattgcatccccgattagtgtttga 36199300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 18 - 331
Target Start/End: Original strand, 36210026 - 36210339
Alignment:
Q  18 cttgcaacccttatgatcttcgccaaaggggataccaatttcacttaaatcaagtctaccatggagatcatacattacaactaggattgtttgcagctcc 117  Q
    ||||||||| ||||||||||| ||||||||||||||||| || | |||||  |||| |||||| ||||||||||||||||  |||| ||||||||||||     
T  36210026 cttgcaaccattatgatcttcaccaaaggggataccaatctctcctaaattgagtcgaccatgaagatcatacattacaatcaggactgtttgcagctct 36210125  T
Q  118 ttcatcttagcacacagtagaagagctctttctgcagttctttttcttttgttattaccataaaacaggcaacaggatgattcagctagagcaatcttat 217  Q
    |||||||||||||| || |||  |||||||||||||||| |  |||||||  |||||||| ||  |  |||||  | |||| | |||| |    ||||||    
T  36210126 ttcatcttagcacaaagaagatcagctctttctgcagttatcattcttttactattaccaaaacgcgtgcaaccagttgatacggctacatacgtcttat 36210225  T
Q  218 catcaaaattcagacatattgcatcaccaatttgtgtttgaatctgtgtaatgtctggcttcttcgtcacggttgctgtgacaatcttttcgaacaattg 317  Q
    ||| |||||| |||| ||||||||  ||||||| ||||||||||| |||||||||||||||||| ||||| |||| |||||||||||||| |||| | ||    
T  36210226 cattaaaattgagacctattgcattgccaatttctgtttgaatctttgtaatgtctggcttctttgtcacagttgttgtgacaatcttttggaacgaatg 36210325  T
Q  318 atctctctctgctc 331  Q
    |||| |||||||||    
T  36210326 atctttctctgctc 36210339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 237 - 331
Target Start/End: Original strand, 36214831 - 36214925
Alignment:
Q  237 tgcatcaccaatttgtgtttgaatctgtgtaatgtctggcttcttcgtcacggttgctgtgacaatcttttcgaacaattgatctctctctgctc 331  Q
    |||||||||||||||||||||||||| |||||||||||||||||| ||||| ||||||||||||||||||| |||||||||||||||||| ||||    
T  36214831 tgcatcaccaatttgtgtttgaatctttgtaatgtctggcttctttgtcacagttgctgtgacaatcttttggaacaattgatctctctcagctc 36214925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 18 - 156
Target Start/End: Original strand, 36188593 - 36188731
Alignment:
Q  18 cttgcaacccttatgatcttcgccaaaggggataccaatttcacttaaatcaagtctaccatggagatcatacattacaactaggattgtttgcagctcc 117  Q
    ||||||||| ||||||||||| ||||||||||||||||| || | |||||  |||| |||||| ||||||||||||||||  |||| ||||||||||||     
T  36188593 cttgcaaccattatgatcttcaccaaaggggataccaatctctcctaaattgagtcgaccatgaagatcatacattacaatcaggactgtttgcagctct 36188692  T
Q  118 ttcatcttagcacacagtagaagagctctttctgcagtt 156  Q
    |||||||||||||| || |||  ||||||||||||||||    
T  36188693 ttcatcttagcacaaagaagatcagctctttctgcagtt 36188731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 222 - 326
Target Start/End: Original strand, 36188749 - 36188853
Alignment:
Q  222 aaaattcagacatattgcatcaccaatttgtgtttgaatctgtgtaatgtctggcttcttcgtcacggttgctgtgacaatcttttcgaacaattgatct 321  Q
    |||||| |||| ||||||||  ||||||| ||||||||||| |||||||||||||||||| || || |||| |||||||||||||| |||||||||||||    
T  36188749 aaaattgagacctattgcatagccaatttctgtttgaatctttgtaatgtctggcttctttgttacagttgttgtgacaatcttttggaacaattgatct 36188848  T
Q  322 ctctc 326  Q
     ||||    
T  36188849 ttctc 36188853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 220 - 331
Target Start/End: Original strand, 36183540 - 36183651
Alignment:
Q  220 tcaaaattcagacatattgcatcaccaatttgtgtttgaatctgtgtaatgtctggcttcttcgtcacggttgctgtgacaatcttttcgaacaattgat 319  Q
    |||||||| |||| |||||||  ||||||||||||| |||||| |||||||||  ||||||  ||||| ||||||  ||| ||||||| |||||||||||    
T  36183540 tcaaaattgagacctattgcaataccaatttgtgttcgaatctatgtaatgtcaagcttctatgtcacagttgctaagacgatcttttggaacaattgat 36183639  T
Q  320 ctctctctgctc 331  Q
    ||||||| ||||    
T  36183640 ctctctcagctc 36183651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 108 - 154
Target Start/End: Original strand, 36183441 - 36183487
Alignment:
Q  108 ttgcagctccttcatcttagcacacagtagaagagctctttctgcag 154  Q
    ||||||||||||||||||||||||||  | |||||||||||||||||    
T  36183441 ttgcagctccttcatcttagcacacaaaataagagctctttctgcag 36183487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 278 - 331
Target Start/End: Original strand, 36199303 - 36199356
Alignment:
Q  278 tcttcgtcacggttgctgtgacaatcttttcgaacaattgatctctctctgctc 331  Q
    |||| ||||| |||| |||||||||||||| |||||||||||||||||| ||||    
T  36199303 tctttgtcacagttgttgtgacaatcttttggaacaattgatctctctcggctc 36199356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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