View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3472_high_25 (Length: 316)
Name: NF3472_high_25
Description: NF3472
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3472_high_25 |
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Alignment Details
Target: chr4 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 298
Target Start/End: Complemental strand, 53681227 - 53680930
Alignment:
| Q |
1 |
tttggaaatgtggtggcagactaattattgcgttccattgaaattttcaccgtgaaaaccagaagctccaatttgtagcttcagcttcaccgtaaaattg |
100 |
Q |
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| T |
53681227 |
tttggaaatgtggtggcagactaattatcgcgttccattgaaattttcaccatgaaaaccagaagctccaatttgtagcttcagcttcaccgtgaaattg |
53681128 |
T |
|
| Q |
101 |
tctagctgcaccacatttccaaacacataccaagtctagggtggccactacnnnnnnnataggaaaaacttaacattcactaatattaatatagaagggg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| |
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| T |
53681127 |
tctagctgcaccacatttccaaacacataccaagtctagggtggccactactttttttataagaaaaacttaacattcactaatattaatatagaagggg |
53681028 |
T |
|
| Q |
201 |
gaatggatcaaagacacaagttgaaccagtaatcaaacccaagagttacaagacaaaatgatgcaatcatccaaaaggtttggcttacaagggcattt |
298 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53681027 |
gaatggatcaaagacacaagttgaaccagtaatcaaacccaagagttacaagacaaaatgatgcaatcatccaaaaggtttggcttacaagggcattt |
53680930 |
T |
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