View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3472_high_33 (Length: 248)
Name: NF3472_high_33
Description: NF3472
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3472_high_33 |
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Alignment Details
Target: chr7 (Bit Score: 117; Significance: 1e-59; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 16 - 132
Target Start/End: Original strand, 27324138 - 27324254
Alignment:
| Q |
16 |
atacaaaagcaaaagtttgtgaaataaacaaaataaaagggaatagtgtttttcaattgcaaataagagagatttaattagacgaagcatgctttggtgc |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27324138 |
atacaaaagcaaaagtttgtgaaataaacaaaataaaagggaatagtgtttttcaattgcaaataagagagatttaattagacgaagcatgctttggtgc |
27324237 |
T |
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| Q |
116 |
ttgctttgattgatttt |
132 |
Q |
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||||||||||||||||| |
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| T |
27324238 |
ttgctttgattgatttt |
27324254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 176 - 248
Target Start/End: Original strand, 27324298 - 27324370
Alignment:
| Q |
176 |
cttatatgctttggtgtttgcctttgagagggtttcacactgatagttcccaattgcatcctccatgatggtt |
248 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27324298 |
cttatatgctttggtgtttgcatttgagagggtttcacactgatagttcccaattgcatcctccatgatggtt |
27324370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 117; Significance: 1e-59; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 16 - 132
Target Start/End: Original strand, 28358933 - 28359049
Alignment:
| Q |
16 |
atacaaaagcaaaagtttgtgaaataaacaaaataaaagggaatagtgtttttcaattgcaaataagagagatttaattagacgaagcatgctttggtgc |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28358933 |
atacaaaagcaaaagtttgtgaaataaacaaaataaaagggaatagtgtttttcaattgcaaataagagagatttaattagacgaagcatgctttggtgc |
28359032 |
T |
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| Q |
116 |
ttgctttgattgatttt |
132 |
Q |
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||||||||||||||||| |
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| T |
28359033 |
ttgctttgattgatttt |
28359049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 176 - 248
Target Start/End: Original strand, 28359093 - 28359165
Alignment:
| Q |
176 |
cttatatgctttggtgtttgcctttgagagggtttcacactgatagttcccaattgcatcctccatgatggtt |
248 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28359093 |
cttatatgctttggtgtttgcatttgagagggtttcacactgatagttcccaattgcatcctccatgatggtt |
28359165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 113; Significance: 2e-57; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 16 - 132
Target Start/End: Original strand, 3500370 - 3500486
Alignment:
| Q |
16 |
atacaaaagcaaaagtttgtgaaataaacaaaataaaagggaatagtgtttttcaattgcaaataagagagatttaattagacgaagcatgctttggtgc |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
3500370 |
atacaaaagcaaaagtttgtgaaataaacaaaataaaagggaatagtgtttttcaattgcaaataagagagatttaattagacgaagcatgttttggtgc |
3500469 |
T |
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| Q |
116 |
ttgctttgattgatttt |
132 |
Q |
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||||||||||||||||| |
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| T |
3500470 |
ttgctttgattgatttt |
3500486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 176 - 244
Target Start/End: Original strand, 3500529 - 3500597
Alignment:
| Q |
176 |
cttatatgctttggtgtttgcctttgagagggtttcacactgatagttcccaattgcatcctccatgat |
244 |
Q |
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||||||||||||||||||||| ||||||| ||||||||||||||||||| ||||||||||||||||||| |
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| T |
3500529 |
cttatatgctttggtgtttgcatttgagaaggtttcacactgatagttcgcaattgcatcctccatgat |
3500597 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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