View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3472_high_9 (Length: 437)
Name: NF3472_high_9
Description: NF3472
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3472_high_9 |
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Alignment Details
Target: chr7 (Bit Score: 305; Significance: 1e-171; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 85 - 429
Target Start/End: Original strand, 47717395 - 47717730
Alignment:
| Q |
85 |
gaatactaacacgaagaaggtttttggcgaaattggaaacaccatcagagaccaaaacaaccatgtctttattggatctggtatcgcgtatggatttacc |
184 |
Q |
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| T |
47717395 |
gaatactaacacgaagaaggtttttggcgaaattggaaacaccatcagagaccaaaacaaccatgtctttattggatctggtgtcgcgtatggatttacc |
47717494 |
T |
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| Q |
185 |
gagaactcgaacgcccaataagaattcatctccgtataaaagagtaacgtatgcttcttcatcgttagatcctaaacaggtttggaattgaatagagagt |
284 |
Q |
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| T |
47717495 |
gagaactcgaacgcccaataagaattcatctccgtataaaagagtaacgtatgcttcttcatcgttagatcctaaacaggtttggaattgaatagagagt |
47717594 |
T |
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| Q |
285 |
agagaaataagcaagcataataaccaacggtaactactacttgtactgtttggtttcattgtagcagcttgattctgaattgaagaagaagaagaaggtt |
384 |
Q |
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| T |
47717595 |
agagaaataagcaagcataataaccaacggtaactactacttgtactgtttggtttcattgtagcagcttgattctgaatt---------gaagaaggtt |
47717685 |
T |
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| Q |
385 |
aaagttgaatttaaatgttctctttcgtgttcactcttctctgct |
429 |
Q |
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| T |
47717686 |
aaagttgaatttaaatgttctctttcgtgttcactcgtctctgct |
47717730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 47717306 - 47717345
Alignment:
| Q |
1 |
ccatcagcctacaacacaaaaaccataaataaatcaaaca |
40 |
Q |
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| T |
47717306 |
ccatcagcctacaacacaaaaaccataaataaatcaaaca |
47717345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 120 - 223
Target Start/End: Complemental strand, 35796878 - 35796775
Alignment:
| Q |
120 |
gaaacaccatcagagaccaaaacaaccatgtctttattggatctggtatcgcgtatggatttaccgagaactcgaacgcccaataagaattcatctccgt |
219 |
Q |
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| T |
35796878 |
gaaacaccatcagagactaaaacaaccatatccttgtttgatcgagtatcgcgtatcgattttccaagaaccctaacgcctaacaagaattcatctccgt |
35796779 |
T |
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| Q |
220 |
ataa |
223 |
Q |
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|||| |
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| T |
35796778 |
ataa |
35796775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 328 - 362
Target Start/End: Original strand, 36880930 - 36880964
Alignment:
| Q |
328 |
tactgtttggtttcattgtagcagcttgattctga |
362 |
Q |
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| T |
36880930 |
tactgtttggtttcactgtagcagcttgattctga |
36880964 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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