View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3472_low_12 (Length: 429)
Name: NF3472_low_12
Description: NF3472
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3472_low_12 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 19 - 429
Target Start/End: Original strand, 3674085 - 3674499
Alignment:
| Q |
19 |
tgaccttcaagtctacggtcgataatacggtgcagcttcttttgatctctcaacattggtcttgcccattccaccaagtttttccctctacttgattctg |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3674085 |
tgaccttcaagtctacggtcgataatacggtgcagcttcttttgatctctcaacattggtcttgcccattccaccaagtttttccctctacttgattctg |
3674184 |
T |
|
| Q |
119 |
aagacttatccactacccttcttcctgtgagcaattctaatagaaccactccatagctatacacatcactctttgttgtgaggtgacc--tatataatca |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
3674185 |
aagacttatccactacccttcttcctgtgagcaattctaatagaaccactccatagctatacacatcactctttgttgtgaggtgacctatatataatca |
3674284 |
T |
|
| Q |
217 |
atcgggcaagggttaattagatt--nnnnnnnnnttcttcttcttaaccctcaaattatcagcgaaaacaaccctgataatctagagttcggccaggagc |
314 |
Q |
| |
|
||||||||||||||||||||||| |||||| |||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
3674285 |
atcgggcaagggttaattagattcaaatttttttttcttcgtcttaaccctaaaattatcagcgaaaacaatcctgataatctagagttcggccaggagc |
3674384 |
T |
|
| Q |
315 |
agcataaaacagggttaacattttgtatggtagagtcatacctgtcatgatgtactcaggagccgcataaccatgtgttcccattacgcgtgtcgttaca |
414 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3674385 |
agcataaaacagggttaacattttgtatggtagagtcatacctgtcatgatgtactcaggagccgcataaccatgtgttcccattacgcgtgtcgttaca |
3674484 |
T |
|
| Q |
415 |
tgtgtctctgctcct |
429 |
Q |
| |
|
||||||||| ||||| |
|
|
| T |
3674485 |
tgtgtctcttctcct |
3674499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 124 - 191
Target Start/End: Complemental strand, 48554367 - 48554300
Alignment:
| Q |
124 |
ttatccactacccttcttcctgtgagcaattctaatagaaccactccatagctatacacatcactctt |
191 |
Q |
| |
|
|||||||||||||| ||||||| |||||||| || | || |||||||||||||||||||||||||| |
|
|
| T |
48554367 |
ttatccactaccctctttcctgtaagcaattccaacaacactactccatagctatacacatcactctt |
48554300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University