View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3472_low_13 (Length: 421)
Name: NF3472_low_13
Description: NF3472
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3472_low_13 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 18 - 409
Target Start/End: Original strand, 45673314 - 45673714
Alignment:
| Q |
18 |
ttaacatggtattgttgtgtgaagaaaggtatgtacatgggttttcaataggatgttt--------caatcaacatacaaagacaaaaagctacagccta |
109 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
45673314 |
ttaacatggtattgttgtgtgaagaaaggtatgtacatgggttttaaataggatgtttcaaagtttcaatcaacatacaaagacaaaaagctacagccta |
45673413 |
T |
|
| Q |
110 |
ttgcacgtgaggtttcatttgtaattgttattgtagaccaattccttgaccatacccaaagggaaaatgaaacatacaccaacgtatagagataactgac |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45673414 |
ttgcacgtgaggtttcatttgtaattgttattgtagaccaattccttgaccatacccaaagggaaaatgaaacatacaccaacgtatagagataactgac |
45673513 |
T |
|
| Q |
210 |
agatagattcccttgccactttattcattccttataattcctactaataattaaatcacctttcctgcaatccaatccttcttaaactttgatttatgcc |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
45673514 |
agatagattcccttgccactttattcattccttataattcctactaataattaaatcacctttcctgcaatccaatccttcttaaagtttgatttatgcc |
45673613 |
T |
|
| Q |
310 |
caaattaacctttataaaatcatttaggatgaatattgtctcccatttataatt-tttaaatgtgtttggattggatgtgagattcttaaatattagaca |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45673614 |
caaattaacctttataaaatcatttaggatgaatattgtctcccatttataattataaaaatgtgtttggattggatgtgagattcttaaatattagaca |
45673713 |
T |
|
| Q |
409 |
t |
409 |
Q |
| |
|
| |
|
|
| T |
45673714 |
t |
45673714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University